Wall clock time and date at job start Tue Mar 31 2020 05:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30779 * 1 3 3 Si 1.86803 * 120.00017 * 2 1 4 4 H 1.48502 * 109.46944 * 274.64265 * 3 2 1 5 5 H 1.48501 * 109.47245 * 34.64353 * 3 2 1 6 6 H 1.48500 * 109.47028 * 154.64270 * 3 2 1 7 7 C 1.40053 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99910 * 163.64178 * 7 2 1 9 9 C 1.40843 * 119.99788 * 343.64033 * 7 2 1 10 10 C 1.40732 * 120.32212 * 333.47838 * 9 7 2 11 11 C 1.37615 * 119.84932 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.74103 * 179.97438 * 11 10 9 13 13 C 1.39208 * 120.51412 * 0.02562 * 11 10 9 14 14 C 1.37973 * 120.66021 * 359.73944 * 13 11 10 15 15 C 1.39216 * 120.12650 * 0.51485 * 14 13 11 16 16 C 1.47752 * 120.25375 * 179.76874 * 15 14 13 17 17 C 1.40307 * 119.88639 * 129.72327 * 16 15 14 18 18 C 1.36138 * 120.55500 * 180.02562 * 17 16 15 19 19 C 1.39955 * 119.98329 * 359.97438 * 18 17 16 20 20 N 1.34760 * 134.58381 * 180.02562 * 19 18 17 21 21 N 1.28645 * 109.28823 * 179.97438 * 20 19 18 22 22 N 1.28813 * 111.79895 * 359.97438 * 21 20 19 23 23 H 0.97001 * 125.93567 * 180.26923 * 22 21 20 24 24 C 1.37370 * 108.11769 * 359.97438 * 22 21 20 25 25 C 1.38598 * 134.88924 * 179.97438 * 24 22 21 26 26 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 27 27 H 1.07998 * 120.06958 * 359.96007 * 10 9 7 28 28 H 1.08004 * 119.67483 * 180.02562 * 13 11 10 29 29 H 1.08002 * 119.93930 * 180.28582 * 14 13 11 30 30 H 1.08003 * 119.72528 * 0.02562 * 17 16 15 31 31 H 1.08000 * 120.00617 * 179.97438 * 18 17 16 32 32 H 1.07997 * 120.25127 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3912 2.1031 -1.3955 5 1 1.4918 2.6224 0.7959 6 1 3.5850 1.4138 0.5996 7 6 2.0081 -1.2129 -0.0005 8 1 3.0553 -1.2317 -0.2640 9 6 1.3466 -2.4081 0.3425 10 6 0.2229 -2.3804 1.1894 11 6 -0.4163 -3.5540 1.5178 12 9 -1.4944 -3.5249 2.3314 13 6 0.0400 -4.7709 1.0191 14 6 1.1366 -4.8221 0.1834 15 6 1.8070 -3.6519 -0.1622 16 6 2.9847 -3.7040 -1.0529 17 6 3.0556 -2.8560 -2.1685 18 6 4.1341 -2.8930 -2.9985 19 6 5.1843 -3.7818 -2.7415 20 7 6.3566 -4.0606 -3.3448 21 7 6.9646 -4.9832 -2.6860 22 7 6.2865 -5.3639 -1.6591 23 1 6.5537 -6.0434 -1.0205 24 6 5.1224 -4.6356 -1.6221 25 6 4.0216 -4.5930 -0.7810 26 1 -0.4850 0.8400 0.0004 27 1 -0.1366 -1.4402 1.5808 28 1 -0.4722 -5.6837 1.2853 29 1 1.4779 -5.7721 -0.2006 30 1 2.2478 -2.1682 -2.3705 31 1 4.1793 -2.2366 -3.8549 32 1 3.9675 -5.2455 0.0779 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241942747.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:17 Heat of formation + Delta-G solvation = 58.334498 kcal Electronic energy + Delta-G solvation = -20818.410118 eV Core-core repulsion = 17465.862091 eV Total energy + Delta-G solvation = -3352.548027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.55816 -44.03230 -39.97928 -38.04776 -35.64979 -34.75300 -32.65700 -31.81333 -31.24633 -29.38788 -27.35757 -25.09793 -24.01237 -23.49226 -22.91366 -21.87979 -19.51966 -19.16563 -18.76515 -17.74475 -17.12135 -16.84424 -16.61474 -16.34861 -16.21663 -15.73215 -15.03290 -14.80364 -14.49197 -14.15834 -14.03882 -13.46229 -13.24056 -12.98402 -12.93101 -12.73265 -12.62195 -12.45782 -12.14844 -12.08216 -11.91473 -11.61358 -11.42490 -11.08553 -9.87207 -9.52567 -9.41178 -8.90414 -8.64238 -6.41651 -0.38006 0.38920 0.77293 0.94168 1.41627 1.44261 1.48449 1.54704 1.71714 2.17569 2.60674 2.78443 3.16446 3.55810 3.74729 3.81077 3.96331 4.08813 4.36116 4.38153 4.50575 4.58420 4.70160 4.99756 5.02479 5.06231 5.16377 5.27428 5.36373 5.60896 5.67523 5.73377 5.79243 5.93392 6.01212 6.09938 6.25131 6.56160 6.81991 6.85894 7.32221 8.21828 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.006425 C = 0.004692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.189534 B = 4356.775960 C = 5966.412385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.044 3.956 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.458 4.458 8 H 0.090 0.910 9 C 0.127 3.873 10 C -0.222 4.222 11 C 0.096 3.904 12 F -0.168 7.168 13 C -0.277 4.277 14 C -0.036 4.036 15 C -0.197 4.197 16 C 0.044 3.956 17 C -0.090 4.090 18 C -0.063 4.063 19 C -0.022 4.022 20 N -0.280 5.280 21 N -0.039 5.039 22 N -0.402 5.402 23 H 0.467 0.533 24 C 0.035 3.965 25 C -0.117 4.117 26 H 0.292 0.708 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -5.481 -1.001 8.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.174 4.174 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.195 1.195 6 H -0.183 1.183 7 C -0.486 4.486 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.243 4.243 11 C 0.077 3.923 12 F -0.147 7.147 13 C -0.297 4.297 14 C -0.054 4.054 15 C -0.198 4.198 16 C 0.040 3.960 17 C -0.111 4.111 18 C -0.085 4.085 19 C -0.147 4.147 20 N -0.157 5.157 21 N -0.021 5.021 22 N -0.133 5.133 23 H 0.317 0.683 24 C -0.085 4.085 25 C -0.139 4.139 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.145 0.855 29 H 0.155 0.845 30 H 0.150 0.850 31 H 0.166 0.834 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.172 -5.470 -1.866 9.211 hybrid contribution -1.127 0.658 1.335 1.867 sum 6.045 -4.812 -0.531 7.745 Atomic orbital electron populations 1.69828 1.09064 1.31138 1.33209 1.26702 0.95225 1.04341 0.91179 0.85376 0.79371 0.76625 0.79761 1.18256 1.19482 1.18285 1.19760 0.98112 0.91141 1.39580 0.89171 1.17512 0.89646 0.92637 0.87808 1.21173 1.02215 0.95735 1.05142 1.18038 0.85327 0.95916 0.93008 1.91329 1.54166 1.97661 1.71572 1.20516 1.04196 0.95229 1.09718 1.20762 0.93258 0.97064 0.94354 1.18727 1.01162 0.93545 1.06408 1.18579 0.92168 0.92702 0.92566 1.21082 0.98107 0.98445 0.93454 1.20016 0.90527 0.97329 1.00649 1.20160 0.96233 1.02127 0.96213 1.75187 1.06047 1.10684 1.23778 1.77763 1.19231 1.09072 0.95986 1.44704 1.13383 1.32352 1.22843 0.68253 1.19680 0.91466 0.97357 1.00031 1.20179 0.90572 1.02906 1.00211 0.89662 0.87324 0.85542 0.84469 0.84951 0.83373 0.83212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.41 11.00 21.85 0.24 -38.17 16 2 C 0.04 1.96 5.15 85.29 0.44 2.40 16 3 Si 0.97 34.75 29.59 68.60 2.03 36.78 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 7 C -0.46 -21.15 7.08 23.35 0.17 -20.98 16 8 H 0.09 4.04 6.62 -2.91 -0.02 4.02 16 9 C 0.13 5.96 5.55 -21.12 -0.12 5.84 16 10 C -0.22 -10.91 8.63 22.73 0.20 -10.72 16 11 C 0.10 4.38 7.28 22.36 0.16 4.54 16 12 F -0.17 -7.53 17.26 44.97 0.78 -6.75 16 13 C -0.28 -10.92 10.01 22.44 0.22 -10.70 16 14 C -0.04 -1.33 9.48 22.44 0.21 -1.12 16 15 C -0.20 -7.97 5.51 -19.62 -0.11 -8.07 16 16 C 0.04 1.55 4.92 -20.01 -0.10 1.45 16 17 C -0.09 -3.15 7.89 22.28 0.18 -2.97 16 18 C -0.06 -2.02 10.03 22.20 0.22 -1.80 16 19 C -0.02 -0.74 7.36 39.77 0.29 -0.45 16 20 N -0.28 -9.42 12.42 -52.34 -0.65 -10.07 16 21 N -0.04 -1.14 13.28 37.02 0.49 -0.65 16 22 N -0.40 -9.48 7.08 -51.69 -0.37 -9.85 16 23 H 0.47 6.57 8.96 -219.81 -1.97 4.60 16 24 C 0.03 1.02 7.40 39.02 0.29 1.31 16 25 C -0.12 -3.46 9.53 22.60 0.22 -3.24 16 26 H 0.29 12.66 8.30 -92.71 -0.77 11.89 16 27 H 0.11 5.70 6.26 -2.91 -0.02 5.68 16 28 H 0.13 4.32 8.06 -2.91 -0.02 4.30 16 29 H 0.14 4.03 8.04 -2.91 -0.02 4.00 16 30 H 0.13 4.95 7.28 -2.91 -0.02 4.93 16 31 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.15 3.67 8.04 -2.91 -0.02 3.65 16 Total: -1.00 -55.69 287.39 4.02 -51.66 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.77 Total: 21.56 kcal Atomic # 6 Polarization: -46.79 SS G_CDS: 2.27 Total: -44.51 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.28 Total: -58.74 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.78 Total: -6.75 kcal Atomic # 14 Polarization: 34.75 SS G_CDS: 2.03 Total: 36.78 kcal Total: -55.69 4.02 -51.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942747.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.997 kcal (2) G-P(sol) polarization free energy of solvation -55.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds