Wall clock time and date at job start Tue Mar 31 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48505 * 109.47050 * 87.62865 * 3 2 1 5 5 H 1.48496 * 109.46967 * 207.62573 * 3 2 1 6 6 H 1.48499 * 109.47030 * 327.62910 * 3 2 1 7 7 C 1.39996 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 330.95291 * 7 2 1 9 9 C 1.40918 * 120.00063 * 150.94825 * 7 2 1 10 10 C 1.40960 * 120.13349 * 145.02348 * 9 7 2 11 11 C 1.36167 * 119.90291 * 180.02562 * 10 9 7 12 12 C 1.40071 * 120.18188 * 359.97438 * 11 10 9 13 13 C 1.47907 * 119.86228 * 180.02562 * 12 11 10 14 14 C 1.40242 * 119.87891 * 359.72782 * 13 12 11 15 15 C 1.36165 * 120.55573 * 179.68064 * 14 13 12 16 16 C 1.39935 * 119.97467 * 0.62663 * 15 14 13 17 17 N 1.34763 * 134.59330 * 179.70154 * 16 15 14 18 18 N 1.28644 * 109.28696 * 179.97438 * 17 16 15 19 19 N 1.28815 * 111.79626 * 359.97438 * 18 17 16 20 20 H 0.97002 * 125.93907 * 180.02562 * 19 18 17 21 21 C 1.37363 * 108.11874 * 359.97438 * 19 18 17 22 22 C 1.38622 * 134.89409 * 179.97438 * 21 19 18 23 23 C 1.39826 * 120.26743 * 0.02562 * 12 11 10 24 24 C 1.36538 * 120.09672 * 359.71673 * 23 12 11 25 25 F 1.35102 * 120.09276 * 180.29728 * 24 23 12 26 26 H 0.96998 * 120.00246 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.04622 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.90673 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.72345 * 359.97438 * 14 13 12 30 30 H 1.08005 * 120.00933 * 180.25357 * 15 14 13 31 31 H 1.07997 * 120.24948 * 0.02562 * 22 21 19 32 32 H 1.08004 * 119.95446 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4395 2.0755 1.3989 5 1 3.5639 1.4263 -0.6492 6 1 1.4656 2.6377 -0.7496 7 6 2.0083 -1.2124 0.0005 8 1 1.5702 -2.0887 0.4551 9 6 3.2845 -1.2893 -0.5920 10 6 4.2737 -2.1254 -0.0358 11 6 5.5055 -2.1958 -0.6119 12 6 5.7920 -1.4402 -1.7560 13 6 7.1322 -1.5225 -2.3764 14 6 8.1128 -2.3523 -1.8136 15 6 9.3490 -2.4435 -2.3771 16 6 9.6534 -1.6953 -3.5198 17 7 10.7462 -1.5558 -4.2960 18 7 10.4908 -0.7245 -5.2439 19 7 9.2850 -0.2765 -5.1753 20 1 8.8780 0.3586 -5.7851 21 6 8.6754 -0.8554 -4.0889 22 6 7.4168 -0.7727 -3.5139 23 6 4.8163 -0.6084 -2.3139 24 6 3.5758 -0.5333 -1.7484 25 9 2.6312 0.2658 -2.2910 26 1 -0.4850 0.8400 -0.0004 27 1 4.0549 -2.7093 0.8460 28 1 6.2636 -2.8361 -0.1856 29 1 7.8840 -2.9274 -0.9286 30 1 10.0962 -3.0884 -1.9387 31 1 6.6632 -0.1300 -3.9445 32 1 5.0429 -0.0277 -3.1959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241942753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:10 Heat of formation + Delta-G solvation = 83.871903 kcal Electronic energy + Delta-G solvation = -20582.173541 eV Core-core repulsion = 17230.732899 eV Total energy + Delta-G solvation = -3351.440642 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.87019 -42.91579 -38.66573 -36.89649 -34.11782 -33.60260 -31.69784 -30.68551 -29.47320 -29.14326 -25.69944 -23.66181 -22.89911 -22.31820 -21.18549 -20.64812 -18.24445 -18.14759 -17.69383 -16.05832 -16.01301 -15.73602 -15.35721 -14.98674 -14.45942 -14.30060 -14.01082 -13.40691 -13.14945 -12.78594 -12.44821 -12.27349 -12.09531 -11.86566 -11.71398 -11.48147 -11.26411 -11.13575 -10.80621 -10.63802 -10.33944 -10.13760 -9.83911 -9.48893 -8.87298 -8.42447 -7.96465 -7.38953 -7.35982 -4.75438 0.66205 1.44270 2.09861 2.40061 2.68278 2.69617 2.98981 3.08303 3.11782 3.76293 3.84666 4.22483 4.28402 4.82155 4.98047 5.01064 5.15352 5.35095 5.36753 5.58353 5.63175 5.71128 5.99431 6.09441 6.28114 6.30477 6.42170 6.45565 6.67099 6.79249 6.85102 6.96471 7.09368 7.23711 7.42458 7.47981 7.71745 7.91679 8.23825 8.34916 8.45186 9.59322 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.004255 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.580716 B = 6578.380877 C = 7100.678171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.087 3.913 3 Si 0.924 3.076 4 H -0.284 1.284 5 H -0.241 1.241 6 H -0.275 1.275 7 C -0.424 4.424 8 H 0.103 0.897 9 C 0.070 3.930 10 C -0.199 4.199 11 C -0.056 4.056 12 C -0.197 4.197 13 C 0.062 3.938 14 C -0.124 4.124 15 C -0.044 4.044 16 C -0.025 4.025 17 N -0.250 5.250 18 N -0.044 5.044 19 N -0.431 5.431 20 H 0.448 0.552 21 C 0.053 3.947 22 C -0.156 4.156 23 C -0.078 4.078 24 C -0.024 4.024 25 F -0.151 7.151 26 H 0.293 0.707 27 H 0.113 0.887 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.001 0.209 -3.223 9.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.383 5.383 2 C -0.139 4.139 3 Si 0.750 3.250 4 H -0.212 1.212 5 H -0.165 1.165 6 H -0.200 1.200 7 C -0.449 4.449 8 H 0.121 0.879 9 C 0.065 3.935 10 C -0.218 4.218 11 C -0.075 4.075 12 C -0.198 4.198 13 C 0.058 3.942 14 C -0.145 4.145 15 C -0.067 4.067 16 C -0.150 4.150 17 N -0.127 5.127 18 N -0.025 5.025 19 N -0.158 5.158 20 H 0.293 0.707 21 C -0.067 4.067 22 C -0.178 4.178 23 C -0.097 4.097 24 C -0.043 4.043 25 F -0.130 7.130 26 H 0.104 0.896 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.146 0.854 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.043 0.301 -3.975 10.806 hybrid contribution -1.410 1.336 -0.042 1.943 sum 8.633 1.637 -4.017 9.662 Atomic orbital electron populations 1.69751 1.08746 1.31565 1.28226 1.26473 0.94766 1.02849 0.89834 0.86074 0.82732 0.78435 0.77798 1.21167 1.16468 1.20037 1.19573 0.97476 0.97840 1.29999 0.87945 1.17813 0.93403 0.91935 0.90305 1.20591 0.92694 1.06538 1.01958 1.20548 0.96442 0.96568 0.93924 1.17623 0.92253 1.08123 1.01818 1.18674 0.92894 0.91436 0.91169 1.20944 0.92292 1.00250 1.01022 1.19862 0.96924 0.97493 0.92372 1.19853 0.91019 1.03533 1.00575 1.75165 1.23216 1.12513 1.01844 1.77842 0.98145 1.08496 1.17979 1.44712 1.10189 1.37104 1.23812 0.70660 1.19699 0.97082 0.98750 0.91177 1.19919 0.93257 1.05695 0.98898 1.20392 0.91855 0.98398 0.99084 1.17251 0.87197 1.02521 0.97379 1.91047 1.64662 1.71966 1.85362 0.89578 0.86933 0.87475 0.84467 0.84904 0.85398 0.87377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.63 13.93 55.55 0.77 -17.86 16 2 C 0.09 2.09 4.72 -17.32 -0.08 2.01 16 3 Si 0.92 19.89 25.37 -169.99 -4.31 15.58 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.24 -5.32 5.31 56.52 0.30 -5.02 16 6 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.42 -10.36 9.37 -37.91 -0.36 -10.72 16 8 H 0.10 2.56 8.06 -52.48 -0.42 2.13 16 9 C 0.07 1.59 4.87 -106.73 -0.52 1.07 16 10 C -0.20 -3.97 9.73 -39.30 -0.38 -4.35 16 11 C -0.06 -1.01 9.35 -39.64 -0.37 -1.38 16 12 C -0.20 -3.59 5.90 -104.66 -0.62 -4.21 16 13 C 0.06 0.99 5.88 -104.83 -0.62 0.38 16 14 C -0.12 -1.73 9.34 -39.57 -0.37 -2.10 16 15 C -0.04 -0.61 10.03 -39.69 -0.40 -1.01 16 16 C -0.02 -0.39 7.36 -84.93 -0.63 -1.02 16 17 N -0.25 -4.11 12.42 32.10 0.40 -3.71 16 18 N -0.04 -0.65 13.28 60.35 0.80 0.15 16 19 N -0.43 -5.46 7.08 32.31 0.23 -5.23 16 20 H 0.45 3.78 8.96 -190.23 -1.71 2.08 16 21 C 0.05 0.78 7.40 -84.23 -0.62 0.15 16 22 C -0.16 -2.34 9.44 -39.09 -0.37 -2.71 16 23 C -0.08 -1.55 9.32 -39.60 -0.37 -1.92 16 24 C -0.02 -0.53 4.96 -39.07 -0.19 -0.73 16 25 F -0.15 -3.53 12.78 2.25 0.03 -3.50 16 26 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 27 H 0.11 2.05 8.06 -52.49 -0.42 1.63 16 28 H 0.11 1.55 6.14 -52.49 -0.32 1.22 16 29 H 0.14 1.61 6.13 -52.49 -0.32 1.29 16 30 H 0.13 1.47 8.06 -52.48 -0.42 1.05 16 31 H 0.13 1.76 6.15 -52.49 -0.32 1.43 16 32 H 0.11 1.89 6.15 -52.48 -0.32 1.57 16 LS Contribution 278.07 15.07 4.19 4.19 Total: -1.00 -27.01 278.07 -7.28 -34.29 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.50 Total: 2.60 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -5.89 Total: -26.51 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 2.20 Total: -26.65 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.03 Total: -3.50 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.31 Total: 15.58 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -27.01 -7.28 -34.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.159 kcal (2) G-P(sol) polarization free energy of solvation -27.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds