Wall clock time and date at job start Tue Mar 31 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86803 * 119.99789 * 2 1 4 4 H 1.48505 * 109.47050 * 87.62865 * 3 2 1 5 5 H 1.48496 * 109.46967 * 207.62573 * 3 2 1 6 6 H 1.48499 * 109.47030 * 327.62910 * 3 2 1 7 7 C 1.39996 * 120.00310 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99880 * 330.95291 * 7 2 1 9 9 C 1.40918 * 120.00063 * 150.94825 * 7 2 1 10 10 C 1.40960 * 120.13349 * 145.02348 * 9 7 2 11 11 C 1.36167 * 119.90291 * 180.02562 * 10 9 7 12 12 C 1.40071 * 120.18188 * 359.97438 * 11 10 9 13 13 C 1.47907 * 119.86228 * 180.02562 * 12 11 10 14 14 C 1.40242 * 119.87891 * 359.72782 * 13 12 11 15 15 C 1.36165 * 120.55573 * 179.68064 * 14 13 12 16 16 C 1.39935 * 119.97467 * 0.62663 * 15 14 13 17 17 N 1.34763 * 134.59330 * 179.70154 * 16 15 14 18 18 N 1.28644 * 109.28696 * 179.97438 * 17 16 15 19 19 N 1.28815 * 111.79626 * 359.97438 * 18 17 16 20 20 H 0.97002 * 125.93907 * 180.02562 * 19 18 17 21 21 C 1.37363 * 108.11874 * 359.97438 * 19 18 17 22 22 C 1.38622 * 134.89409 * 179.97438 * 21 19 18 23 23 C 1.39826 * 120.26743 * 0.02562 * 12 11 10 24 24 C 1.36538 * 120.09672 * 359.71673 * 23 12 11 25 25 F 1.35102 * 120.09276 * 180.29728 * 24 23 12 26 26 H 0.96998 * 120.00246 * 0.02562 * 1 2 3 27 27 H 1.08000 * 120.04622 * 0.02562 * 10 9 7 28 28 H 1.08002 * 119.90673 * 179.97438 * 11 10 9 29 29 H 1.07998 * 119.72345 * 359.97438 * 14 13 12 30 30 H 1.08005 * 120.00933 * 180.25357 * 15 14 13 31 31 H 1.07997 * 120.24948 * 0.02562 * 22 21 19 32 32 H 1.08004 * 119.95446 * 179.97438 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4395 2.0755 1.3989 5 1 3.5639 1.4263 -0.6492 6 1 1.4656 2.6377 -0.7496 7 6 2.0083 -1.2124 0.0005 8 1 1.5702 -2.0887 0.4551 9 6 3.2845 -1.2893 -0.5920 10 6 4.2737 -2.1254 -0.0358 11 6 5.5055 -2.1958 -0.6119 12 6 5.7920 -1.4402 -1.7560 13 6 7.1322 -1.5225 -2.3764 14 6 8.1128 -2.3523 -1.8136 15 6 9.3490 -2.4435 -2.3771 16 6 9.6534 -1.6953 -3.5198 17 7 10.7462 -1.5558 -4.2960 18 7 10.4908 -0.7245 -5.2439 19 7 9.2850 -0.2765 -5.1753 20 1 8.8780 0.3586 -5.7851 21 6 8.6754 -0.8554 -4.0889 22 6 7.4168 -0.7727 -3.5139 23 6 4.8163 -0.6084 -2.3139 24 6 3.5758 -0.5333 -1.7484 25 9 2.6312 0.2658 -2.2910 26 1 -0.4850 0.8400 -0.0004 27 1 4.0549 -2.7093 0.8460 28 1 6.2636 -2.8361 -0.1856 29 1 7.8840 -2.9274 -0.9286 30 1 10.0962 -3.0884 -1.9387 31 1 6.6632 -0.1300 -3.9445 32 1 5.0429 -0.0277 -3.1959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241942753.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:09 Heat of formation + Delta-G solvation = 67.904517 kcal Electronic energy + Delta-G solvation = -20582.865939 eV Core-core repulsion = 17230.732899 eV Total energy + Delta-G solvation = -3352.133040 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.60347 -44.08286 -40.07407 -38.27022 -35.71806 -34.80299 -33.17173 -31.95949 -30.90948 -30.53823 -27.19451 -24.93695 -24.22747 -23.56306 -22.65289 -22.10404 -19.87600 -19.34314 -19.00095 -17.65892 -17.19237 -17.17255 -16.88315 -16.49009 -16.13801 -15.64191 -15.24668 -14.87302 -14.79924 -14.18394 -13.86562 -13.72527 -13.48525 -13.20996 -13.16104 -12.91594 -12.73707 -12.46546 -12.13116 -12.07105 -11.83133 -11.56601 -11.44936 -11.15661 -10.25754 -9.63578 -9.48080 -9.07502 -8.83201 -6.50363 -0.56191 0.26605 0.68289 0.79054 1.26311 1.30519 1.40267 1.51164 1.66718 2.09312 2.39759 2.81137 3.09801 3.38384 3.67158 3.69435 3.95830 4.00176 4.17421 4.26661 4.32666 4.35792 4.68004 4.83012 4.86294 4.94483 5.10225 5.20838 5.21843 5.42636 5.50830 5.57885 5.76783 5.85598 5.96316 6.01819 6.06821 6.24398 6.56021 6.69418 7.27944 7.96943 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.033184 B = 0.004255 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.580716 B = 6578.380877 C = 7100.678171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.062 3.938 3 Si 0.962 3.038 4 H -0.277 1.277 5 H -0.248 1.248 6 H -0.271 1.271 7 C -0.481 4.481 8 H 0.075 0.925 9 C 0.055 3.945 10 C -0.199 4.199 11 C -0.056 4.056 12 C -0.165 4.165 13 C 0.036 3.964 14 C -0.112 4.112 15 C -0.045 4.045 16 C -0.031 4.031 17 N -0.277 5.277 18 N -0.043 5.043 19 N -0.408 5.408 20 H 0.466 0.534 21 C 0.038 3.962 22 C -0.138 4.138 23 C -0.090 4.090 24 C -0.048 4.048 25 F -0.163 7.163 26 H 0.297 0.703 27 H 0.125 0.875 28 H 0.152 0.848 29 H 0.165 0.835 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.993 -0.127 -4.215 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.159 4.159 3 Si 0.785 3.215 4 H -0.204 1.204 5 H -0.172 1.172 6 H -0.196 1.196 7 C -0.508 4.508 8 H 0.093 0.907 9 C 0.051 3.949 10 C -0.218 4.218 11 C -0.073 4.073 12 C -0.166 4.166 13 C 0.032 3.968 14 C -0.133 4.133 15 C -0.067 4.067 16 C -0.156 4.156 17 N -0.153 5.153 18 N -0.024 5.024 19 N -0.138 5.138 20 H 0.315 0.685 21 C -0.083 4.083 22 C -0.160 4.160 23 C -0.109 4.109 24 C -0.068 4.068 25 F -0.142 7.142 26 H 0.108 0.892 27 H 0.143 0.857 28 H 0.170 0.830 29 H 0.182 0.818 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 14.043 -0.024 -4.983 14.901 hybrid contribution -2.021 1.313 -0.039 2.411 sum 12.022 1.289 -5.022 13.092 Atomic orbital electron populations 1.69781 1.09552 1.32102 1.32203 1.26916 0.95082 1.04473 0.89397 0.85533 0.81505 0.76537 0.77908 1.20434 1.17206 1.19565 1.19417 0.99516 0.97696 1.34166 0.90733 1.18037 0.93556 0.92881 0.90406 1.20893 0.92988 1.05587 1.02307 1.20987 0.96401 0.96533 0.93424 1.18030 0.92710 1.05224 1.00623 1.18661 0.92310 0.93567 0.92279 1.21174 0.91540 0.99228 1.01347 1.20183 0.97501 0.97345 0.91621 1.20339 0.90887 1.03430 1.00929 1.75192 1.23926 1.13589 1.02623 1.77805 0.98799 1.08114 1.17658 1.44776 1.09394 1.36354 1.23286 0.68452 1.19732 0.97064 0.99471 0.91997 1.20090 0.93432 1.04448 0.98029 1.20704 0.91161 0.99121 0.99907 1.17621 0.88142 1.03160 0.97871 1.91008 1.65349 1.72339 1.85498 0.89180 0.85729 0.83039 0.81798 0.82117 0.84205 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.60 13.93 21.84 0.30 -42.29 16 2 C 0.06 3.15 4.72 85.27 0.40 3.56 16 3 Si 0.96 42.06 25.37 68.60 1.74 43.80 16 4 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.25 -10.95 5.31 99.48 0.53 -10.42 16 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.48 -25.06 9.37 23.35 0.22 -24.84 16 8 H 0.07 4.09 8.06 -2.91 -0.02 4.07 16 9 C 0.05 2.55 4.87 -21.23 -0.10 2.44 16 10 C -0.20 -7.68 9.73 22.45 0.22 -7.47 16 11 C -0.06 -1.76 9.35 22.23 0.21 -1.56 16 12 C -0.16 -5.38 5.90 -19.89 -0.12 -5.50 16 13 C 0.04 0.97 5.88 -20.00 -0.12 0.85 16 14 C -0.11 -2.49 9.34 22.27 0.21 -2.28 16 15 C -0.04 -0.99 10.03 22.20 0.22 -0.77 16 16 C -0.03 -0.83 7.36 39.76 0.29 -0.54 16 17 N -0.28 -8.12 12.42 -52.35 -0.65 -8.77 16 18 N -0.04 -1.13 13.28 37.02 0.49 -0.63 16 19 N -0.41 -8.74 7.08 -51.69 -0.37 -9.10 16 20 H 0.47 6.04 8.96 -219.81 -1.97 4.07 16 21 C 0.04 0.96 7.40 39.02 0.29 1.24 16 22 C -0.14 -3.53 9.44 22.59 0.21 -3.32 16 23 C -0.09 -3.36 9.32 22.26 0.21 -3.16 16 24 C -0.05 -2.17 4.96 22.60 0.11 -2.06 16 25 F -0.16 -7.75 12.78 44.97 0.57 -7.18 16 26 H 0.30 14.02 8.30 -92.71 -0.77 13.25 16 27 H 0.12 4.44 8.06 -2.91 -0.02 4.41 16 28 H 0.15 3.46 6.14 -2.91 -0.02 3.45 16 29 H 0.16 2.74 6.13 -2.91 -0.02 2.72 16 30 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.14 3.22 6.15 -2.91 -0.02 3.20 16 32 H 0.13 4.18 6.15 -2.91 -0.02 4.16 16 Total: -1.00 -60.95 278.07 3.41 -57.54 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -0.94 Total: 10.02 kcal Atomic # 6 Polarization: -45.64 SS G_CDS: 2.25 Total: -43.39 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.22 Total: -60.80 kcal Atomic # 9 Polarization: -7.75 SS G_CDS: 0.57 Total: -7.18 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.74 Total: 43.80 kcal Total: -60.95 3.41 -57.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241942753.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.444 kcal (2) G-P(sol) polarization free energy of solvation -60.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds