Wall clock time and date at job start Tue Mar 31 2020 05:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48498 * 109.47178 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46877 * 299.99682 * 3 2 1 6 6 H 1.48499 * 109.47179 * 59.99799 * 3 2 1 7 7 C 1.39921 * 119.99922 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00400 * 197.92339 * 7 2 1 9 9 C 1.41433 * 120.00215 * 17.92400 * 7 2 1 10 10 C 1.40761 * 120.16848 * 24.49987 * 9 7 2 11 11 C 1.37903 * 119.96996 * 180.02562 * 10 9 7 12 12 F 1.35096 * 119.83535 * 180.02562 * 11 10 9 13 13 C 1.38661 * 120.32583 * 0.02562 * 11 10 9 14 14 C 1.39674 * 120.35531 * 359.95793 * 13 11 10 15 15 C 1.48367 * 119.98998 * 180.02562 * 14 13 11 16 16 C 1.39989 * 119.91253 * 179.97438 * 15 14 13 17 17 C 1.36122 * 120.63613 * 179.97438 * 16 15 14 18 18 C 1.40262 * 120.10277 * 0.02562 * 17 16 15 19 19 N 1.34793 * 132.90440 * 180.02562 * 18 17 16 20 20 N 1.28612 * 110.36415 * 180.02562 * 19 18 17 21 21 N 1.40277 * 109.44867 * 0.02562 * 20 19 18 22 22 H 0.96994 * 126.77286 * 180.02562 * 21 20 19 23 23 C 1.37542 * 106.46191 * 359.97438 * 21 20 19 24 24 C 1.38795 * 119.91285 * 359.72258 * 15 14 13 25 25 C 1.38797 * 120.01805 * 0.04013 * 14 13 11 26 26 H 0.96995 * 119.99825 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.01482 * 359.97438 * 10 9 7 28 28 H 1.08009 * 119.81820 * 179.97438 * 13 11 10 29 29 H 1.07999 * 119.68242 * 359.96248 * 16 15 14 30 30 H 1.07999 * 119.95491 * 180.02562 * 17 16 15 31 31 H 1.07998 * 120.20230 * 0.02562 * 24 15 14 32 32 H 1.08004 * 120.16305 * 180.25258 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.7024 1.3464 -0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8836 2.3965 1.2125 7 6 2.0080 -1.2118 0.0005 8 1 3.0486 -1.2344 0.2884 9 6 1.3523 -2.4071 -0.3759 10 6 0.2231 -2.3604 -1.2150 11 6 -0.4133 -3.5284 -1.5790 12 9 -1.4965 -3.4805 -2.3849 13 6 0.0530 -4.7516 -1.1220 14 6 1.1725 -4.8137 -0.2890 15 6 1.6649 -6.1270 0.1948 16 6 2.7874 -6.1874 1.0292 17 6 3.2514 -7.3843 1.4821 18 6 2.6057 -8.5739 1.1143 19 7 2.8356 -9.8701 1.4039 20 7 1.9634 -10.6190 0.8272 21 7 1.0734 -9.8201 0.0941 22 1 0.3201 -10.1254 -0.4351 23 6 1.4789 -8.5183 0.2747 24 6 1.0083 -7.2920 -0.1767 25 6 1.8242 -3.6472 0.0864 26 1 -0.4849 0.8400 0.0004 27 1 -0.1451 -1.4104 -1.5729 28 1 -0.4520 -5.6613 -1.4119 29 1 3.2901 -5.2757 1.3161 30 1 4.1181 -7.4180 2.1256 31 1 0.1401 -7.2457 -0.8173 32 1 2.6925 -3.6928 0.7271 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241944934.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:21 Heat of formation + Delta-G solvation = 72.508628 kcal Electronic energy + Delta-G solvation = -20258.863992 eV Core-core repulsion = 16906.930602 eV Total energy + Delta-G solvation = -3351.933390 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.80980 -41.93950 -38.49075 -36.71543 -33.97876 -33.51032 -31.31435 -30.30366 -29.52311 -28.07328 -25.70707 -23.99628 -22.85496 -22.30148 -20.74277 -20.69592 -18.15630 -17.97104 -16.84392 -16.09229 -15.54377 -15.33349 -15.19956 -14.84918 -14.48278 -14.34774 -14.08132 -13.79019 -13.02339 -12.46266 -12.37162 -12.17862 -12.00329 -11.87709 -11.71528 -11.25296 -11.19591 -11.15537 -10.89789 -10.59322 -10.54727 -10.16379 -9.87183 -9.46048 -8.84383 -8.38702 -7.70214 -7.29100 -7.00265 -4.66868 0.43793 1.43527 2.06339 2.45486 2.47835 2.77798 2.96320 2.99925 3.02518 3.75562 3.85922 4.22330 4.38492 4.70968 4.87817 4.93432 5.24197 5.32600 5.33297 5.58483 5.69324 5.91013 6.01843 6.21766 6.30660 6.37029 6.47159 6.68452 6.79678 6.81594 6.97133 6.98200 7.25977 7.42645 7.51796 7.67772 7.94681 8.03421 8.30083 8.56787 8.58513 9.92515 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026000 B = 0.004052 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.672475 B = 6908.242528 C = 7901.216614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.453 4.453 8 H 0.087 0.913 9 C 0.124 3.876 10 C -0.189 4.189 11 C 0.106 3.894 12 F -0.165 7.165 13 C -0.257 4.257 14 C -0.023 4.023 15 C 0.049 3.951 16 C -0.122 4.122 17 C -0.038 4.038 18 C -0.033 4.033 19 N -0.216 5.216 20 N -0.023 5.023 21 N -0.505 5.505 22 H 0.445 0.555 23 C 0.102 3.898 24 C -0.140 4.140 25 C -0.200 4.200 26 H 0.285 0.715 27 H 0.131 0.869 28 H 0.105 0.895 29 H 0.145 0.855 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 -7.441 0.083 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.481 4.481 8 H 0.105 0.895 9 C 0.121 3.879 10 C -0.209 4.209 11 C 0.086 3.914 12 F -0.144 7.144 13 C -0.278 4.278 14 C -0.023 4.023 15 C 0.045 3.955 16 C -0.143 4.143 17 C -0.060 4.060 18 C -0.157 4.157 19 N -0.096 5.096 20 N -0.004 5.004 21 N -0.228 5.228 22 H 0.291 0.709 23 C -0.020 4.020 24 C -0.162 4.162 25 C -0.219 4.219 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.123 0.877 29 H 0.162 0.838 30 H 0.155 0.845 31 H 0.153 0.847 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.222 -8.737 0.531 9.031 hybrid contribution -0.887 1.504 -0.816 1.927 sum 1.335 -7.233 -0.285 7.361 Atomic orbital electron populations 1.69805 1.07775 1.29864 1.33225 1.25995 0.94781 1.01790 0.91941 0.86189 0.81022 0.80416 0.78807 1.18099 1.19511 1.19756 1.19660 0.98445 0.90843 1.39146 0.89532 1.17302 0.90238 0.92230 0.88121 1.21435 1.00602 0.96159 1.02714 1.17536 0.85444 0.94973 0.93402 1.91350 1.53614 1.97540 1.71891 1.20270 1.02527 0.95280 1.09679 1.17951 0.95822 0.90291 0.98264 1.18948 0.92192 0.92312 0.92090 1.20992 0.96912 0.97996 0.98355 1.20085 0.98834 0.88645 0.98408 1.19821 0.99000 0.92308 1.04608 1.74469 1.17032 1.01868 1.16205 1.81484 0.97683 1.15789 1.05454 1.47675 1.28325 1.03708 1.43097 0.70912 1.19286 0.96686 0.86658 0.99334 1.20122 1.03042 0.87859 1.05169 1.21190 1.03413 0.91505 1.05809 0.90365 0.85086 0.87740 0.83767 0.84514 0.84676 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.71 10.96 55.55 0.61 -18.10 16 2 C 0.07 1.70 5.13 -17.35 -0.09 1.62 16 3 Si 0.91 17.00 29.60 -169.99 -5.03 11.96 16 4 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -10.70 9.05 -37.74 -0.34 -11.04 16 8 H 0.09 1.93 7.91 -52.49 -0.42 1.51 16 9 C 0.12 2.95 5.57 -106.87 -0.60 2.36 16 10 C -0.19 -4.58 8.67 -38.75 -0.34 -4.92 16 11 C 0.11 2.40 7.28 -39.55 -0.29 2.11 16 12 F -0.16 -3.65 17.26 2.25 0.04 -3.61 16 13 C -0.26 -5.26 9.41 -38.89 -0.37 -5.62 16 14 C -0.02 -0.45 5.87 -104.98 -0.62 -1.06 16 15 C 0.05 0.80 5.88 -104.87 -0.62 0.18 16 16 C -0.12 -1.77 9.33 -39.69 -0.37 -2.14 16 17 C -0.04 -0.51 10.04 -39.58 -0.40 -0.91 16 18 C -0.03 -0.50 7.25 -84.90 -0.62 -1.12 16 19 N -0.22 -3.42 12.35 32.11 0.40 -3.02 16 20 N -0.02 -0.34 13.82 60.35 0.83 0.49 16 21 N -0.50 -6.29 7.57 32.34 0.24 -6.05 16 22 H 0.44 3.80 8.96 -182.47 -1.64 2.17 16 23 C 0.10 1.48 7.34 -84.16 -0.62 0.86 16 24 C -0.14 -2.08 9.44 -39.14 -0.37 -2.45 16 25 C -0.20 -4.20 9.16 -38.52 -0.35 -4.55 16 26 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 27 H 0.13 3.33 6.15 -52.49 -0.32 3.01 16 28 H 0.10 1.88 6.16 -52.48 -0.32 1.55 16 29 H 0.14 1.91 6.16 -52.49 -0.32 1.58 16 30 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.14 1.83 6.16 -52.49 -0.32 1.51 16 32 H 0.11 2.03 6.16 -52.48 -0.32 1.71 16 LS Contribution 286.32 15.07 4.31 4.31 Total: -1.00 -26.51 286.32 -7.79 -34.30 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.22 Total: 6.39 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -5.97 Total: -26.69 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: 2.08 Total: -26.68 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.96 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -26.51 -7.79 -34.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241944934.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.810 kcal (2) G-P(sol) polarization free energy of solvation -26.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds