Wall clock time and date at job start Tue Mar 31 2020 05:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86794 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47217 * 275.38027 * 3 2 1 5 5 H 1.48506 * 109.47383 * 35.37650 * 3 2 1 6 6 H 1.48504 * 109.47282 * 155.37886 * 3 2 1 7 7 C 1.39891 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00384 * 341.35309 * 7 2 1 9 9 C 1.41377 * 120.00003 * 161.62428 * 7 2 1 10 10 C 1.40806 * 120.57044 * 150.58687 * 9 7 2 11 11 N 1.31511 * 120.71081 * 179.97438 * 10 9 7 12 12 C 1.32159 * 122.07841 * 0.02562 * 11 10 9 13 13 F 1.35098 * 119.46305 * 180.02562 * 12 11 10 14 14 C 1.40115 * 121.07193 * 359.97438 * 12 11 10 15 15 C 1.48285 * 120.42129 * 180.02562 * 14 12 11 16 16 C 1.39057 * 120.20729 * 245.00142 * 15 14 12 17 17 C 1.38494 * 120.30906 * 179.97438 * 16 15 14 18 18 C 1.37735 * 120.67041 * 0.02562 * 17 16 15 19 19 C 1.39803 * 120.02715 * 359.97438 * 18 17 16 20 20 N 1.35810 * 133.51025 * 179.97438 * 19 18 17 21 21 C 1.30118 * 109.60659 * 180.02562 * 20 19 18 22 22 N 1.36030 * 110.05949 * 0.02562 * 21 20 19 23 23 H 0.97001 * 126.34155 * 180.02562 * 22 21 20 24 24 C 1.37887 * 107.32277 * 359.76074 * 22 21 20 25 25 C 1.39053 * 119.15650 * 359.77083 * 14 12 11 26 26 H 0.96998 * 120.00152 * 0.02562 * 1 2 3 27 27 H 1.07999 * 119.64804 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.84777 * 359.95827 * 16 15 14 29 29 H 1.07998 * 119.66321 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.98472 * 180.02562 * 18 17 16 31 31 H 1.07999 * 124.97157 * 180.02562 * 21 20 19 32 32 H 1.07990 * 120.94160 * 180.25136 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3763 2.1121 -1.3939 5 1 1.5014 2.6172 0.8106 6 1 3.5923 1.4101 0.5833 7 6 2.0081 -1.2115 0.0005 8 1 1.5107 -2.1222 0.3000 9 6 3.3678 -1.2428 -0.3854 10 6 4.2424 -2.2071 0.1510 11 7 5.5076 -2.2391 -0.2065 12 6 6.0139 -1.3801 -1.0739 13 9 7.3214 -1.4615 -1.4038 14 6 5.2163 -0.3870 -1.6576 15 6 5.7992 0.5692 -2.6297 16 6 5.8693 1.9236 -2.3226 17 6 6.4138 2.8184 -3.2287 18 6 6.8926 2.3832 -4.4447 19 6 6.8325 1.0261 -4.7751 20 7 7.2119 0.3117 -5.8660 21 6 6.9357 -0.9465 -5.6817 22 7 6.3607 -1.1241 -4.4617 23 1 6.0621 -1.9662 -4.0841 24 6 6.2863 0.1138 -3.8588 25 6 3.8699 -0.3127 -1.3178 26 1 -0.4850 0.8400 -0.0004 27 1 3.8703 -2.9283 0.8636 28 1 5.4972 2.2795 -1.3733 29 1 6.4634 3.8680 -2.9793 30 1 7.3153 3.0905 -5.1428 31 1 7.1340 -1.7344 -6.3931 32 1 3.2280 0.4386 -1.7533 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243935339.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:25 Heat of formation + Delta-G solvation = 49.301393 kcal Electronic energy + Delta-G solvation = -21291.076294 eV Core-core repulsion = 17938.136562 eV Total energy + Delta-G solvation = -3352.939732 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -47.84910 -41.88495 -38.79788 -36.98882 -34.22305 -33.49831 -31.74403 -31.02274 -29.18485 -28.38068 -25.58142 -23.66913 -22.56860 -22.19847 -21.61858 -20.32127 -18.18612 -17.56851 -17.06333 -16.69991 -16.14905 -15.64467 -15.27274 -14.95779 -14.90508 -14.09905 -13.95432 -13.51502 -13.43452 -13.18664 -12.53654 -12.46232 -12.22512 -11.86915 -11.72790 -11.57876 -11.39710 -11.08186 -10.78278 -10.52081 -10.26360 -9.91562 -9.69908 -8.86686 -8.64615 -8.22747 -8.08482 -7.65315 -7.32842 -4.86311 1.04066 1.70268 1.93375 2.22724 2.86086 2.94378 2.99115 3.05058 3.13849 3.67352 4.01866 4.13079 4.37568 4.73532 4.79598 4.96668 5.14303 5.26452 5.44040 5.52208 5.65469 5.73147 5.90186 5.96497 6.17342 6.34607 6.43649 6.61656 6.64978 6.69359 6.84118 6.95586 7.00542 7.22174 7.47256 7.51882 7.90962 7.96968 8.04287 8.33163 8.86309 9.66972 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.006809 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.851055 B = 4111.414343 C = 4849.782151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.083 3.917 3 Si 0.900 3.100 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.242 1.242 7 C -0.419 4.419 8 H 0.102 0.898 9 C 0.035 3.965 10 C 0.036 3.964 11 N -0.479 5.479 12 C 0.151 3.849 13 F -0.142 7.142 14 C -0.077 4.077 15 C -0.016 4.016 16 C -0.096 4.096 17 C -0.125 4.125 18 C -0.073 4.073 19 C 0.043 3.957 20 N -0.502 5.502 21 C 0.257 3.743 22 N -0.591 5.591 23 H 0.425 0.575 24 C 0.070 3.930 25 C -0.174 4.174 26 H 0.292 0.708 27 H 0.148 0.852 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.127 0.873 31 H 0.214 0.786 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 2.807 -6.090 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.139 4.139 3 Si 0.725 3.275 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.165 1.165 7 C -0.447 4.447 8 H 0.120 0.880 9 C 0.030 3.970 10 C -0.129 4.129 11 N -0.191 5.191 12 C 0.000 4.000 13 F -0.122 7.122 14 C -0.081 4.081 15 C -0.019 4.019 16 C -0.115 4.115 17 C -0.145 4.145 18 C -0.093 4.093 19 C -0.075 4.075 20 N -0.222 5.222 21 C -0.030 4.030 22 N -0.202 5.202 23 H 0.264 0.736 24 C -0.041 4.041 25 C -0.199 4.199 26 H 0.103 0.897 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.277 2.696 -6.502 10.124 hybrid contribution -0.705 0.419 0.501 0.961 sum 6.572 3.116 -6.001 9.429 Atomic orbital electron populations 1.69672 1.08126 1.31105 1.31656 1.26226 0.94852 1.01994 0.90853 0.86448 0.81558 0.79763 0.79740 1.18626 1.20765 1.16495 1.19485 0.92397 0.96628 1.36190 0.88041 1.18583 0.94572 0.92567 0.91284 1.22435 0.86206 1.02288 1.01957 1.66361 1.16907 1.23730 1.12052 1.17483 0.79258 0.99155 1.04099 1.91433 1.33132 1.96232 1.91388 1.18994 0.94332 0.95904 0.98862 1.17675 1.00157 0.93291 0.90781 1.20999 0.99694 0.91041 0.99815 1.20781 1.00513 0.99574 0.93611 1.20199 1.00340 0.91952 0.96780 1.18976 1.03079 0.94283 0.91171 1.70437 1.24179 1.02336 1.25259 1.25277 0.95231 0.95799 0.86738 1.43125 1.51904 1.09112 1.16010 0.73590 1.18785 1.03805 0.85775 0.95732 1.21376 0.93136 1.03952 1.01407 0.89691 0.83505 0.85428 0.85250 0.85526 0.76944 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.70 13.93 55.54 0.77 -17.93 16 2 C 0.08 1.95 5.41 -17.35 -0.09 1.85 16 3 Si 0.90 18.52 24.54 -169.99 -4.17 14.35 16 4 H -0.26 -5.23 6.70 56.52 0.38 -4.85 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 6 H -0.24 -5.12 6.87 56.52 0.39 -4.73 16 7 C -0.42 -9.98 9.59 -37.77 -0.36 -10.34 16 8 H 0.10 2.48 8.06 -52.48 -0.42 2.05 16 9 C 0.04 0.81 5.11 -106.71 -0.55 0.26 16 10 C 0.04 0.78 10.96 -16.72 -0.18 0.60 16 11 N -0.48 -10.86 10.33 -12.57 -0.13 -10.99 16 12 C 0.15 3.34 8.38 -16.71 -0.14 3.20 16 13 F -0.14 -3.08 16.68 2.25 0.04 -3.04 16 14 C -0.08 -1.64 5.33 -104.76 -0.56 -2.20 16 15 C -0.02 -0.30 5.02 -104.86 -0.53 -0.83 16 16 C -0.10 -1.65 9.73 -39.18 -0.38 -2.03 16 17 C -0.12 -1.81 10.00 -39.67 -0.40 -2.21 16 18 C -0.07 -1.11 10.09 -39.18 -0.40 -1.50 16 19 C 0.04 0.74 7.22 -84.72 -0.61 0.13 16 20 N -0.50 -8.09 11.28 -12.06 -0.14 -8.23 16 21 C 0.26 3.35 12.97 -89.78 -1.16 2.19 16 22 N -0.59 -8.92 6.22 -11.59 -0.07 -8.99 16 23 H 0.43 5.87 8.96 -40.82 -0.37 5.50 16 24 C 0.07 1.26 6.82 -83.74 -0.57 0.68 16 25 C -0.17 -3.86 7.00 -38.25 -0.27 -4.13 16 26 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 27 H 0.15 2.89 8.06 -52.49 -0.42 2.46 16 28 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.21 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.12 2.66 4.81 -52.49 -0.25 2.41 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -28.22 287.71 -7.89 -36.11 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -2.33 Total: 8.70 kcal Atomic # 6 Polarization: -8.12 SS G_CDS: -6.20 Total: -14.32 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.44 Total: -46.13 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.17 Total: 14.35 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.22 -7.89 -36.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243935339.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.409 kcal (2) G-P(sol) polarization free energy of solvation -28.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds