Wall clock time and date at job start Tue Mar 31 2020 05:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39822 * 119.98968 * 76.75141 * 3 2 1 5 5 C 1.37654 * 120.12521 * 179.71964 * 4 3 2 6 6 C 1.39444 * 120.10986 * 0.51097 * 5 4 3 7 7 C 1.48188 * 120.00477 * 179.76340 * 6 5 4 8 8 C 1.39113 * 120.42642 * 64.74551 * 7 6 5 9 9 C 1.40929 * 118.11754 * 179.97438 * 8 7 6 10 10 C 1.41375 * 120.56812 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00024 * 150.44292 * 10 9 8 12 12 C 1.39895 * 120.00064 * 330.44355 * 10 9 8 13 13 N 1.30868 * 120.00103 * 161.68901 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 341.68984 * 12 10 9 15 15 H 1.48496 * 109.47150 * 95.40541 * 14 12 10 16 16 H 1.48503 * 109.47039 * 215.41087 * 14 12 10 17 17 H 1.48502 * 109.46677 * 335.40529 * 14 12 10 18 18 C 1.40814 * 118.86246 * 0.02562 * 9 8 7 19 19 N 1.31504 * 120.72348 * 0.02562 * 18 9 8 20 20 C 1.32150 * 122.09013 * 359.97438 * 19 18 9 21 21 F 1.35101 * 119.46990 * 180.28176 * 20 19 18 22 22 C 1.40111 * 119.98639 * 359.49201 * 6 5 4 23 23 N 1.39535 * 120.06150 * 180.27564 * 22 6 5 24 24 C 1.38425 * 119.87240 * 0.24851 * 22 6 5 25 25 H 1.07999 * 119.93614 * 0.02562 * 4 3 2 26 26 H 1.08002 * 119.94058 * 180.25266 * 5 4 3 27 27 H 1.08002 * 120.94192 * 359.96267 * 8 7 6 28 28 H 0.96992 * 120.00503 * 180.02562 * 13 12 10 29 29 H 1.08006 * 119.63850 * 180.02562 * 18 9 8 30 30 H 0.96999 * 120.00331 * 359.97438 * 23 22 6 31 31 H 0.97003 * 119.99318 * 179.97438 * 23 22 6 32 32 H 1.08004 * 120.05964 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2670 -0.2766 -1.1788 5 6 4.6435 -0.2710 -1.1833 6 6 5.3458 0.0006 -0.0097 7 6 6.8277 0.0008 -0.0160 8 6 7.5289 0.9429 -0.7616 9 6 8.9372 0.8988 -0.7321 10 6 9.7013 1.8310 -1.4708 11 1 10.6791 2.1266 -1.1199 12 6 9.1911 2.3706 -2.6564 13 7 9.7037 3.4693 -3.1491 14 14 7.7780 1.5229 -3.5361 15 1 6.4943 2.1469 -3.1264 16 1 7.9518 1.6659 -5.0040 17 1 7.7648 0.0820 -3.1773 18 6 9.5701 -0.0902 0.0451 19 7 8.8623 -0.9598 0.7322 20 6 7.5408 -0.9488 0.7284 21 9 6.8664 -1.8639 1.4586 22 6 4.6501 0.2790 1.1742 23 7 5.3513 0.5567 2.3482 24 6 3.2658 0.2785 1.1768 25 1 2.7259 -0.4906 -2.0886 26 1 5.1804 -0.4816 -2.0965 27 1 7.0088 1.6869 -1.3468 28 1 9.3497 3.8437 -3.9708 29 1 10.6488 -0.1352 0.0771 30 1 6.3212 0.5568 2.3453 31 1 4.8686 0.7497 3.1672 32 1 2.7265 0.4923 2.0878 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244088690.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:48 Heat of formation + Delta-G solvation = 31.813615 kcal Electronic energy + Delta-G solvation = -20872.150037 eV Core-core repulsion = 17518.451979 eV Total energy + Delta-G solvation = -3353.698059 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.81729 -39.75135 -38.42892 -36.58743 -34.40501 -34.17879 -32.79212 -31.26491 -29.53932 -28.35878 -25.56848 -24.31869 -22.54738 -22.11308 -20.93863 -18.85959 -17.91457 -17.10334 -16.93932 -16.08657 -15.89358 -15.51063 -15.03577 -14.75436 -14.39391 -14.03225 -13.73836 -13.50356 -13.24844 -13.17848 -12.78873 -12.68469 -12.48764 -12.40457 -12.15563 -11.94036 -11.54679 -11.21283 -11.06373 -10.68165 -10.54995 -10.27148 -9.69285 -9.09411 -8.69104 -8.48189 -7.97160 -7.37889 -7.31090 -4.84754 0.78380 1.62672 1.90871 2.23725 2.64067 2.85880 2.96379 3.04352 3.05125 3.67501 3.77944 3.97411 4.11629 4.14658 4.76342 4.85830 4.99645 5.04909 5.20977 5.46443 5.62938 5.76232 5.90074 5.98066 6.10346 6.29070 6.36032 6.52683 6.54762 6.75123 6.84441 6.96499 7.22657 7.45510 7.52691 7.54982 7.87329 7.92985 8.05991 8.34556 8.88233 9.68738 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016970 B = 0.006289 C = 0.005026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.576292 B = 4451.396493 C = 5570.158943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.266 3.734 3 C 0.006 3.994 4 C -0.128 4.128 5 C -0.063 4.063 6 C -0.072 4.072 7 C -0.073 4.073 8 C -0.174 4.174 9 C 0.036 3.964 10 C -0.420 4.420 11 H 0.101 0.899 12 C 0.083 3.917 13 N -0.785 5.785 14 Si 0.900 3.100 15 H -0.260 1.260 16 H -0.282 1.282 17 H -0.241 1.241 18 C 0.036 3.964 19 N -0.480 5.480 20 C 0.153 3.847 21 F -0.139 7.139 22 C 0.237 3.763 23 N -0.864 5.864 24 C -0.155 4.155 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.121 0.879 28 H 0.292 0.708 29 H 0.147 0.853 30 H 0.405 0.595 31 H 0.397 0.603 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -2.513 3.059 7.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.049 4.049 3 C 0.002 3.998 4 C -0.151 4.151 5 C -0.081 4.081 6 C -0.079 4.079 7 C -0.077 4.077 8 C -0.199 4.199 9 C 0.030 3.970 10 C -0.448 4.448 11 H 0.119 0.881 12 C -0.139 4.139 13 N -0.407 5.407 14 Si 0.725 3.275 15 H -0.186 1.186 16 H -0.209 1.209 17 H -0.164 1.164 18 C -0.128 4.128 19 N -0.191 5.191 20 C 0.002 3.998 21 F -0.119 7.119 22 C 0.130 3.870 23 N -0.402 5.402 24 C -0.180 4.180 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.139 0.861 28 H 0.103 0.897 29 H 0.164 0.836 30 H 0.236 0.764 31 H 0.225 0.775 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.917 -2.955 3.396 9.108 hybrid contribution -0.370 0.396 -0.569 0.786 sum -8.287 -2.559 2.827 9.123 Atomic orbital electron populations 1.81209 1.12176 1.09426 1.08045 1.25800 0.92717 0.93200 0.93147 1.15671 0.83659 1.05358 0.95068 1.20752 0.93795 1.03906 0.96646 1.20925 0.93080 0.96851 0.97294 1.18484 0.92221 1.04680 0.92486 1.18861 0.90925 0.97467 1.00453 1.21400 0.93984 1.00708 1.03767 1.18571 0.91738 0.92632 0.94033 1.19490 1.04234 1.16689 1.04403 0.88086 1.26228 0.97124 0.93107 0.97464 1.69674 1.37584 1.14569 1.18864 0.86454 0.80503 0.82753 0.77818 1.18575 1.20890 1.16438 1.22434 0.98307 0.92314 0.99766 1.66364 1.06219 1.26196 1.20341 1.17513 0.86723 0.93449 1.02114 1.91445 1.78457 1.65812 1.76195 1.17452 0.90205 0.92486 0.86828 1.42482 1.09761 1.79299 1.08638 1.20324 0.91733 1.08346 0.97627 0.85341 0.85116 0.86112 0.89729 0.83584 0.76419 0.77489 0.85298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.48 18.54 41.84 0.78 -5.70 16 2 C 0.27 3.55 15.32 -22.47 -0.34 3.20 16 3 C 0.01 0.08 5.73 -106.87 -0.61 -0.53 16 4 C -0.13 -1.64 9.73 -39.20 -0.38 -2.03 16 5 C -0.06 -0.94 9.70 -39.35 -0.38 -1.32 16 6 C -0.07 -1.21 5.04 -104.66 -0.53 -1.74 16 7 C -0.07 -1.42 4.51 -104.76 -0.47 -1.90 16 8 C -0.17 -3.61 6.99 -38.24 -0.27 -3.88 16 9 C 0.04 0.78 5.11 -106.71 -0.55 0.23 16 10 C -0.42 -9.71 9.59 -37.77 -0.36 -10.07 16 11 H 0.10 2.41 8.06 -52.49 -0.42 1.99 16 12 C 0.08 1.89 5.42 -17.34 -0.09 1.80 16 13 N -0.78 -18.35 13.93 55.54 0.77 -17.58 16 14 Si 0.90 17.82 24.53 -169.99 -4.17 13.65 16 15 H -0.26 -4.95 6.70 56.52 0.38 -4.57 16 16 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 17 H -0.24 -4.87 6.86 56.52 0.39 -4.49 16 18 C 0.04 0.76 10.96 -16.72 -0.18 0.58 16 19 N -0.48 -10.33 10.33 -12.56 -0.13 -10.46 16 20 C 0.15 3.15 7.25 -16.69 -0.12 3.03 16 21 F -0.14 -2.79 16.51 2.25 0.04 -2.75 16 22 C 0.24 3.43 6.55 -83.58 -0.55 2.88 16 23 N -0.86 -11.16 8.81 32.53 0.29 -10.88 16 24 C -0.15 -1.94 9.58 -39.00 -0.37 -2.31 16 25 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 27 H 0.12 2.49 4.79 -52.49 -0.25 2.24 16 28 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 29 H 0.15 2.77 8.06 -52.48 -0.42 2.35 16 30 H 0.41 5.93 6.81 -40.82 -0.28 5.65 16 31 H 0.40 3.82 8.84 -40.82 -0.36 3.46 16 32 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -25.26 293.84 -5.39 -30.65 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -2.18 Total: 10.68 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -5.22 Total: -12.05 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: 1.71 Total: -44.62 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -4.17 Total: 13.65 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -25.26 -5.39 -30.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244088690.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.462 kcal (2) G-P(sol) polarization free energy of solvation -25.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds