Wall clock time and date at job start Tue Mar 31 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86804 * 119.99604 * 2 1 4 4 H 1.48504 * 109.46590 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46676 * 299.99069 * 3 2 1 6 6 H 1.48498 * 109.47130 * 59.99592 * 3 2 1 7 7 C 1.39966 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99661 * 187.75530 * 7 2 1 9 9 C 1.40747 * 120.00294 * 7.76222 * 7 2 1 10 10 C 1.41203 * 120.98352 * 48.73237 * 9 7 2 11 11 C 1.36783 * 118.37888 * 180.27281 * 10 9 7 12 12 C 1.38739 * 120.43546 * 359.76347 * 11 10 9 13 13 N 1.31607 * 122.17373 * 359.97438 * 12 11 10 14 14 C 1.32942 * 121.63120 * 359.97438 * 13 12 11 15 15 C 1.47257 * 120.32835 * 180.02562 * 14 13 12 16 16 C 1.36412 * 126.79710 * 187.22638 * 15 14 13 17 17 N 1.35973 * 109.68553 * 180.02562 * 16 15 14 18 18 H 0.96993 * 124.77363 * 179.97438 * 17 16 15 19 19 C 1.37793 * 110.46166 * 0.02562 * 17 16 15 20 20 N 1.32646 * 132.88086 * 180.29912 * 19 17 16 21 21 C 1.31626 * 121.73145 * 180.22670 * 20 19 17 22 22 C 1.38779 * 121.50821 * 359.43404 * 21 20 19 23 23 F 1.35100 * 120.35369 * 180.25827 * 22 21 20 24 24 C 1.38519 * 119.28694 * 0.27189 * 22 21 20 25 25 C 1.39401 * 118.03983 * 0.02562 * 24 22 21 26 26 H 0.96993 * 120.00096 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.81358 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.78914 * 179.74280 * 11 10 9 29 29 H 1.08001 * 118.91778 * 180.02562 * 12 11 10 30 30 H 1.08002 * 125.15942 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.24249 * 179.70869 * 21 20 19 32 32 H 1.07998 * 120.97782 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8837 2.3963 -1.2127 6 1 1.8836 2.3965 1.2124 7 6 2.0084 -1.2121 0.0005 8 1 3.0810 -1.2163 0.1268 9 6 1.3144 -2.4256 -0.1635 10 6 0.3740 -2.5902 -1.2040 11 6 -0.2740 -3.7901 -1.3107 12 6 -0.0041 -4.8165 -0.4172 13 7 0.8720 -4.6861 0.5562 14 6 1.5504 -3.5572 0.7370 15 6 2.5244 -3.4428 1.8354 16 6 3.1871 -2.3162 2.2258 17 7 4.0024 -2.6047 3.2751 18 1 4.5745 -1.9629 3.7239 19 6 3.9026 -3.9375 3.6103 20 7 4.4817 -4.6788 4.5455 21 6 4.2227 -5.9634 4.6695 22 6 3.3199 -6.6053 3.8335 23 9 3.0676 -7.9238 3.9850 24 6 2.6804 -5.8795 2.8420 25 6 2.9774 -4.5223 2.7284 26 1 -0.4850 0.8400 -0.0004 27 1 0.1679 -1.7868 -1.8956 28 1 -1.0008 -3.9394 -2.0955 29 1 -0.5297 -5.7539 -0.5244 30 1 3.0809 -1.3428 1.7701 31 1 4.7209 -6.5298 5.4424 32 1 1.9732 -6.3515 2.1761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245430091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:37 Heat of formation + Delta-G solvation = 51.923389 kcal Electronic energy + Delta-G solvation = -20920.199716 eV Core-core repulsion = 17567.373683 eV Total energy + Delta-G solvation = -3352.826033 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.51238 -41.04367 -38.24281 -37.20323 -34.10634 -32.74702 -30.93396 -30.73321 -29.12411 -27.88354 -25.87162 -23.57865 -22.49558 -22.03951 -21.37837 -19.25883 -18.22714 -17.50077 -16.97508 -16.25570 -15.74146 -15.46482 -14.99805 -14.88136 -14.35163 -14.30230 -13.88887 -13.64549 -12.90446 -12.66992 -12.62637 -12.39380 -12.02034 -11.73660 -11.63224 -11.58004 -11.36364 -11.17517 -10.75325 -10.05952 -9.98577 -9.42995 -9.25477 -8.61353 -8.19567 -7.98980 -7.91259 -6.98152 -6.70841 -4.66273 1.25402 1.48487 2.22124 2.67783 2.94906 2.97181 2.99096 3.16066 3.56425 3.76124 4.11736 4.45445 4.52058 4.80432 5.12769 5.14103 5.27226 5.42540 5.67898 5.84040 6.09322 6.10231 6.14351 6.27605 6.45384 6.58576 6.65671 6.79495 6.94958 7.03819 7.13660 7.33910 7.55267 7.67259 7.69780 7.74401 8.19251 8.22750 8.51271 8.57960 9.39439 10.06571 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.006055 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.657723 B = 4623.438319 C = 6009.113281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.079 3.921 3 Si 0.903 3.097 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.483 4.483 8 H 0.093 0.907 9 C 0.098 3.902 10 C -0.116 4.116 11 C -0.156 4.156 12 C -0.005 4.005 13 N -0.467 5.467 14 C 0.083 3.917 15 C -0.073 4.073 16 C 0.067 3.933 17 N -0.576 5.576 18 H 0.417 0.583 19 C 0.261 3.739 20 N -0.479 5.479 21 C 0.100 3.900 22 C -0.002 4.002 23 F -0.140 7.140 24 C -0.044 4.044 25 C -0.101 4.101 26 H 0.283 0.717 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.212 0.788 31 H 0.163 0.837 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.947 -2.432 3.513 6.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.514 4.514 8 H 0.110 0.890 9 C 0.093 3.907 10 C -0.141 4.141 11 C -0.177 4.177 12 C -0.164 4.164 13 N -0.175 5.175 14 C -0.056 4.056 15 C -0.080 4.080 16 C -0.060 4.060 17 N -0.182 5.182 18 H 0.254 0.746 19 C 0.028 3.972 20 N -0.191 5.191 21 C -0.067 4.067 22 C -0.026 4.026 23 F -0.119 7.119 24 C -0.071 4.071 25 C -0.110 4.110 26 H 0.094 0.906 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.141 0.859 30 H 0.228 0.772 31 H 0.180 0.820 32 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.496 -2.459 4.638 7.600 hybrid contribution -0.484 1.175 -0.971 1.600 sum 5.011 -1.285 3.666 6.341 Atomic orbital electron populations 1.69734 1.07367 1.29496 1.36252 1.25808 0.94858 1.00654 0.92548 0.86327 0.80770 0.81194 0.78953 1.18199 1.19581 1.19779 1.19266 0.95277 0.89849 1.46994 0.88974 1.19264 0.90960 0.91969 0.88463 1.21264 0.99362 0.95590 0.97928 1.21357 1.00560 0.95422 1.00320 1.21697 1.00549 0.98541 0.95650 1.67128 1.06063 1.24954 1.19346 1.20275 0.98881 0.91700 0.94703 1.18365 1.01232 0.90338 0.98097 1.23546 0.92372 1.01514 0.88608 1.41551 1.39715 1.06459 1.30481 0.74597 1.18498 0.97244 0.86569 0.94936 1.66445 1.26300 1.05725 1.20669 1.22264 0.96461 0.89226 0.98707 1.18362 1.03518 0.79182 1.01533 1.91452 1.93554 1.31517 1.95388 1.21118 0.97628 0.92535 0.95835 1.19578 0.99378 0.93436 0.98562 0.90649 0.87005 0.88155 0.85921 0.77174 0.81952 0.82820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.07 12.25 55.55 0.68 -18.39 16 2 C 0.08 1.74 5.33 -17.32 -0.09 1.65 16 3 Si 0.90 16.41 29.57 -169.99 -5.03 11.38 16 4 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 6 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 7 C -0.48 -10.93 6.30 -37.99 -0.24 -11.17 16 8 H 0.09 1.94 6.12 -52.49 -0.32 1.62 16 9 C 0.10 2.35 5.41 -104.48 -0.57 1.78 16 10 C -0.12 -2.70 8.79 -38.98 -0.34 -3.04 16 11 C -0.16 -3.32 9.98 -39.92 -0.40 -3.72 16 12 C -0.01 -0.11 11.11 -17.46 -0.19 -0.31 16 13 N -0.47 -10.80 9.27 -8.08 -0.07 -10.88 16 14 C 0.08 1.97 6.96 -80.38 -0.56 1.41 16 15 C -0.07 -1.57 6.24 -103.23 -0.64 -2.21 16 16 C 0.07 1.23 10.44 -16.37 -0.17 1.06 16 17 N -0.58 -9.29 6.00 -11.84 -0.07 -9.36 16 18 H 0.42 5.17 8.96 -40.82 -0.37 4.80 16 19 C 0.26 4.75 8.41 -155.44 -1.31 3.44 16 20 N -0.48 -8.12 10.38 -12.21 -0.13 -8.25 16 21 C 0.10 1.53 11.13 -17.44 -0.19 1.33 16 22 C 0.00 -0.04 7.34 -39.28 -0.29 -0.33 16 23 F -0.14 -2.20 17.28 2.25 0.04 -2.16 16 24 C -0.04 -0.83 9.94 -39.05 -0.39 -1.22 16 25 C -0.10 -2.03 6.28 -104.93 -0.66 -2.69 16 26 H 0.28 6.17 8.30 -40.82 -0.34 5.83 16 27 H 0.11 2.61 7.79 -52.49 -0.41 2.20 16 28 H 0.10 1.83 8.06 -52.48 -0.42 1.40 16 29 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.21 3.80 4.77 -52.49 -0.25 3.54 16 31 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.15 2.93 7.37 -52.49 -0.39 2.54 16 LS Contribution 287.21 15.07 4.33 4.33 Total: -1.00 -26.93 287.21 -8.43 -35.36 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -2.14 Total: 11.98 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -6.04 Total: -14.01 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: 0.41 Total: -46.88 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 16.41 SS G_CDS: -5.03 Total: 11.38 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.93 -8.43 -35.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245430091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.287 kcal (2) G-P(sol) polarization free energy of solvation -26.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds