Wall clock time and date at job start Tue Mar 31 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86804 * 119.99604 * 2 1 4 4 H 1.48504 * 109.46590 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46676 * 299.99069 * 3 2 1 6 6 H 1.48498 * 109.47130 * 59.99592 * 3 2 1 7 7 C 1.39966 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99661 * 187.75530 * 7 2 1 9 9 C 1.40747 * 120.00294 * 7.76222 * 7 2 1 10 10 C 1.41203 * 120.98352 * 48.73237 * 9 7 2 11 11 C 1.36783 * 118.37888 * 180.27281 * 10 9 7 12 12 C 1.38739 * 120.43546 * 359.76347 * 11 10 9 13 13 N 1.31607 * 122.17373 * 359.97438 * 12 11 10 14 14 C 1.32942 * 121.63120 * 359.97438 * 13 12 11 15 15 C 1.47257 * 120.32835 * 180.02562 * 14 13 12 16 16 C 1.36412 * 126.79710 * 187.22638 * 15 14 13 17 17 N 1.35973 * 109.68553 * 180.02562 * 16 15 14 18 18 H 0.96993 * 124.77363 * 179.97438 * 17 16 15 19 19 C 1.37793 * 110.46166 * 0.02562 * 17 16 15 20 20 N 1.32646 * 132.88086 * 180.29912 * 19 17 16 21 21 C 1.31626 * 121.73145 * 180.22670 * 20 19 17 22 22 C 1.38779 * 121.50821 * 359.43404 * 21 20 19 23 23 F 1.35100 * 120.35369 * 180.25827 * 22 21 20 24 24 C 1.38519 * 119.28694 * 0.27189 * 22 21 20 25 25 C 1.39401 * 118.03983 * 0.02562 * 24 22 21 26 26 H 0.96993 * 120.00096 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.81358 * 359.97438 * 10 9 7 28 28 H 1.08003 * 119.78914 * 179.74280 * 11 10 9 29 29 H 1.08001 * 118.91778 * 180.02562 * 12 11 10 30 30 H 1.08002 * 125.15942 * 359.97438 * 16 15 14 31 31 H 1.07998 * 119.24249 * 179.70869 * 21 20 19 32 32 H 1.07998 * 120.97782 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2424 1.6178 0.0000 4 1 3.7025 1.3464 0.0006 5 1 1.8837 2.3963 -1.2127 6 1 1.8836 2.3965 1.2124 7 6 2.0084 -1.2121 0.0005 8 1 3.0810 -1.2163 0.1268 9 6 1.3144 -2.4256 -0.1635 10 6 0.3740 -2.5902 -1.2040 11 6 -0.2740 -3.7901 -1.3107 12 6 -0.0041 -4.8165 -0.4172 13 7 0.8720 -4.6861 0.5562 14 6 1.5504 -3.5572 0.7370 15 6 2.5244 -3.4428 1.8354 16 6 3.1871 -2.3162 2.2258 17 7 4.0024 -2.6047 3.2751 18 1 4.5745 -1.9629 3.7239 19 6 3.9026 -3.9375 3.6103 20 7 4.4817 -4.6788 4.5455 21 6 4.2227 -5.9634 4.6695 22 6 3.3199 -6.6053 3.8335 23 9 3.0676 -7.9238 3.9850 24 6 2.6804 -5.8795 2.8420 25 6 2.9774 -4.5223 2.7284 26 1 -0.4850 0.8400 -0.0004 27 1 0.1679 -1.7868 -1.8956 28 1 -1.0008 -3.9394 -2.0955 29 1 -0.5297 -5.7539 -0.5244 30 1 3.0809 -1.3428 1.7701 31 1 4.7209 -6.5298 5.4424 32 1 1.9732 -6.3515 2.1761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245430091.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:36 Heat of formation + Delta-G solvation = 37.984055 kcal Electronic energy + Delta-G solvation = -20920.804171 eV Core-core repulsion = 17567.373683 eV Total energy + Delta-G solvation = -3353.430488 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.81280 -42.44361 -39.91169 -38.58728 -35.79269 -34.19507 -32.59153 -32.35088 -30.50274 -29.41076 -27.56812 -24.97306 -24.03262 -23.59743 -22.98380 -20.79942 -19.66715 -19.14120 -18.36726 -17.61269 -17.28983 -16.78541 -16.54640 -16.42349 -15.92869 -15.68329 -15.41035 -15.00328 -14.35897 -14.31714 -14.18387 -13.84109 -13.46551 -13.36895 -13.24299 -12.99624 -12.85001 -12.79153 -12.22492 -11.66340 -11.43960 -11.07725 -10.64855 -10.27966 -9.90305 -9.58972 -9.33171 -8.63881 -8.30889 -6.39670 -0.17145 0.13153 0.59279 1.00426 1.46776 1.50383 1.59248 1.82153 1.99954 2.23952 2.71493 2.85462 3.12294 3.51973 3.65717 3.72829 3.76149 3.95583 4.20128 4.34438 4.48185 4.60539 4.71221 4.79899 4.90804 5.01036 5.09878 5.23413 5.29779 5.53019 5.58007 5.77992 5.88044 6.00634 6.09216 6.37434 6.48406 6.81086 6.86365 6.91832 7.67234 8.42790 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.006055 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.657723 B = 4623.438319 C = 6009.113281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.043 3.957 3 Si 0.973 3.027 4 H -0.243 1.243 5 H -0.275 1.275 6 H -0.270 1.270 7 C -0.494 4.494 8 H 0.103 0.897 9 C 0.068 3.932 10 C -0.137 4.137 11 C -0.158 4.158 12 C -0.015 4.015 13 N -0.483 5.483 14 C 0.070 3.930 15 C -0.117 4.117 16 C 0.088 3.912 17 N -0.558 5.558 18 H 0.436 0.564 19 C 0.255 3.745 20 N -0.478 5.478 21 C 0.116 3.884 22 C 0.006 3.994 23 F -0.134 7.134 24 C -0.062 4.062 25 C -0.126 4.126 26 H 0.286 0.714 27 H 0.102 0.898 28 H 0.130 0.870 29 H 0.152 0.848 30 H 0.217 0.783 31 H 0.208 0.792 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -2.378 4.888 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.171 4.171 3 Si 0.794 3.206 4 H -0.166 1.166 5 H -0.200 1.200 6 H -0.195 1.195 7 C -0.525 4.525 8 H 0.120 0.880 9 C 0.064 3.936 10 C -0.163 4.163 11 C -0.178 4.178 12 C -0.173 4.173 13 N -0.192 5.192 14 C -0.069 4.069 15 C -0.125 4.125 16 C -0.041 4.041 17 N -0.165 5.165 18 H 0.277 0.723 19 C 0.022 3.978 20 N -0.190 5.190 21 C -0.052 4.052 22 C -0.018 4.018 23 F -0.113 7.113 24 C -0.089 4.089 25 C -0.134 4.134 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.233 0.767 31 H 0.225 0.775 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.121 -2.412 6.027 9.636 hybrid contribution -0.987 0.992 -1.341 1.938 sum 6.134 -1.420 4.685 7.848 Atomic orbital electron populations 1.69820 1.09082 1.30530 1.37649 1.26604 0.95353 1.03670 0.91480 0.85276 0.80138 0.76621 0.78569 1.16613 1.19989 1.19468 1.19483 0.95745 0.89918 1.47344 0.87955 1.19638 0.91916 0.92973 0.89082 1.21331 1.00493 0.96240 0.98209 1.21631 1.00633 0.94593 1.00922 1.22249 1.00212 0.99729 0.95143 1.67202 1.06725 1.25104 1.20127 1.20691 0.99295 0.91646 0.95279 1.18514 1.02689 0.92194 0.99077 1.23483 0.91384 1.00867 0.88378 1.41432 1.39100 1.06363 1.29585 0.72293 1.18609 0.97098 0.87138 0.94970 1.66614 1.26066 1.06284 1.20044 1.22972 0.95052 0.88712 0.98427 1.18388 1.03160 0.79288 1.00917 1.91472 1.93495 1.31042 1.95258 1.21131 0.98323 0.92633 0.96810 1.19695 1.00598 0.93861 0.99267 0.90338 0.88007 0.85231 0.83041 0.76669 0.77534 0.84123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -40.94 12.25 21.83 0.27 -40.67 16 2 C 0.04 1.89 5.33 85.26 0.45 2.35 16 3 Si 0.97 33.16 29.57 68.60 2.03 35.19 16 4 H -0.24 -7.62 7.11 99.48 0.71 -6.92 16 5 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 6 H -0.27 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.49 -22.67 6.30 23.30 0.15 -22.53 16 8 H 0.10 4.32 6.12 -2.91 -0.02 4.30 16 9 C 0.07 3.37 5.41 -19.77 -0.11 3.26 16 10 C -0.14 -6.60 8.79 22.66 0.20 -6.40 16 11 C -0.16 -6.77 9.98 22.05 0.22 -6.55 16 12 C -0.01 -0.64 11.11 84.85 0.94 0.30 16 13 N -0.48 -22.89 9.27 -179.48 -1.66 -24.56 16 14 C 0.07 3.40 6.96 43.51 0.30 3.70 16 15 C -0.12 -5.10 6.24 -18.97 -0.12 -5.22 16 16 C 0.09 3.22 10.44 83.62 0.87 4.09 16 17 N -0.56 -17.04 6.00 -191.36 -1.15 -18.19 16 18 H 0.44 9.72 8.96 -92.71 -0.83 8.89 16 19 C 0.25 8.86 8.41 133.75 1.12 9.99 16 20 N -0.48 -14.85 10.38 -192.54 -2.00 -16.84 16 21 C 0.12 3.14 11.13 84.85 0.94 4.08 16 22 C 0.01 0.18 7.34 22.47 0.16 0.34 16 23 F -0.13 -3.92 17.28 44.97 0.78 -3.14 16 24 C -0.06 -2.31 9.94 22.62 0.22 -2.09 16 25 C -0.13 -5.04 6.28 -20.07 -0.13 -5.17 16 26 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 27 H 0.10 4.96 7.79 -2.91 -0.02 4.94 16 28 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.15 5.47 8.06 -2.91 -0.02 5.44 16 30 H 0.22 7.63 4.77 -2.91 -0.01 7.62 16 31 H 0.21 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.14 5.51 7.37 -2.91 -0.02 5.48 16 Total: -1.00 -58.97 287.21 3.88 -55.09 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.37 Total: 32.97 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 5.25 Total: -19.84 kcal Atomic # 7 Polarization: -95.72 SS G_CDS: -4.54 Total: -100.27 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.78 Total: -3.14 kcal Atomic # 14 Polarization: 33.16 SS G_CDS: 2.03 Total: 35.19 kcal Total: -58.97 3.88 -55.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245430091.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.071 kcal (2) G-P(sol) polarization free energy of solvation -58.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds