Wall clock time and date at job start Tue Mar 31 2020 06:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86801 * 119.99945 * 2 1 4 4 H 1.48500 * 109.46907 * 239.99947 * 3 2 1 5 5 H 1.48499 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47373 * 119.99760 * 3 2 1 7 7 C 1.40024 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.41441 * 119.99536 * 0.02562 * 7 2 1 10 10 C 1.40399 * 119.77235 * 180.23124 * 9 7 2 11 11 C 1.39498 * 118.81532 * 180.28904 * 10 9 7 12 12 C 1.48109 * 120.82945 * 179.75891 * 11 10 9 13 13 C 1.35633 * 126.72703 * 309.71822 * 12 11 10 14 14 N 1.36429 * 109.74821 * 180.02562 * 13 12 11 15 15 H 0.96999 * 124.84571 * 180.26629 * 14 13 12 16 16 C 1.37655 * 110.31715 * 0.02562 * 14 13 12 17 17 N 1.32665 * 132.95170 * 180.02562 * 16 14 13 18 18 C 1.31596 * 121.71608 * 179.97438 * 17 16 14 19 19 C 1.38834 * 121.52000 * 0.02903 * 18 17 16 20 20 F 1.35095 * 120.34809 * 180.02562 * 19 18 17 21 21 C 1.38454 * 119.30618 * 359.97438 * 19 18 17 22 22 C 1.39489 * 118.04293 * 359.97438 * 21 19 18 23 23 C 1.40160 * 118.33211 * 359.48515 * 11 10 9 24 24 C 1.38387 * 119.41824 * 0.25458 * 23 11 10 25 25 N 1.31545 * 121.16462 * 0.02562 * 24 23 11 26 26 H 0.97001 * 120.00468 * 0.02562 * 1 2 3 27 27 H 1.07999 * 120.59052 * 0.04901 * 10 9 7 28 28 H 1.08001 * 125.12692 * 0.02562 * 13 12 11 29 29 H 1.08001 * 119.24072 * 180.02562 * 18 17 16 30 30 H 1.07995 * 120.97735 * 180.02562 * 21 19 18 31 31 H 1.08006 * 120.29026 * 180.27014 * 23 11 10 32 32 H 1.08003 * 119.41588 * 179.97438 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2764 2.7464 -0.0006 6 1 3.0951 1.6965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0875 -1.2126 0.0001 9 6 1.3003 -2.4375 0.0005 10 6 2.0070 -3.6506 0.0060 11 6 1.2894 -4.8469 -0.0003 12 6 1.9896 -6.1520 -0.0002 13 6 2.9890 -6.5363 -0.8328 14 7 3.3797 -7.8075 -0.5280 15 1 4.0823 -8.2959 -0.9848 16 6 2.6382 -8.2962 0.5238 17 7 2.6418 -9.4540 1.1714 18 6 1.8173 -9.6911 2.1693 19 6 0.9003 -8.7395 2.5949 20 9 0.0653 -9.0079 3.6224 21 6 0.8512 -7.5122 1.9559 22 6 1.7364 -7.2858 0.9019 23 6 -0.1107 -4.7826 -0.0007 24 6 -0.7345 -3.5473 -0.0003 25 7 -0.0365 -2.4323 0.0000 26 1 -0.4851 0.8400 -0.0004 27 1 3.0870 -3.6575 0.0110 28 1 3.4118 -5.9278 -1.6185 29 1 1.8549 -10.6479 2.6688 30 1 0.1489 -6.7523 2.2650 31 1 -0.6976 -5.6893 -0.0011 32 1 -1.8134 -3.4979 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245434174.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:59 Heat of formation + Delta-G solvation = 41.177529 kcal Electronic energy + Delta-G solvation = -20329.571230 eV Core-core repulsion = 16976.279221 eV Total energy + Delta-G solvation = -3353.292009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.89363 -42.59880 -39.90073 -38.72673 -35.59095 -34.39738 -32.75858 -31.84785 -30.53824 -29.59770 -27.54240 -25.08328 -24.14168 -23.76162 -22.93049 -21.04509 -19.85347 -18.74502 -18.40988 -17.68697 -17.15723 -16.87413 -16.65511 -16.21615 -16.04653 -15.70836 -15.59710 -15.16855 -14.45101 -14.35724 -14.21601 -13.79697 -13.67330 -13.50624 -13.14772 -12.83572 -12.80651 -12.65109 -12.16621 -11.77915 -11.47102 -11.16475 -10.73254 -10.14215 -9.55761 -9.46910 -9.43521 -8.79685 -8.25140 -6.48441 -0.26666 0.05461 0.86342 0.94575 1.42975 1.54770 1.55189 1.68366 1.80359 2.25349 2.61167 2.88683 3.01562 3.43831 3.58202 3.66928 3.87500 3.99722 4.22754 4.27433 4.37807 4.47648 4.67081 4.79757 4.88783 4.90318 5.05102 5.17999 5.26673 5.42092 5.53715 5.66488 5.79786 5.93691 6.17719 6.24971 6.32325 6.77716 6.80714 6.99278 8.23655 8.49268 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.026489 B = 0.003979 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.781198 B = 7034.990476 C = 7563.411654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.025 3.975 3 Si 0.985 3.015 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.470 4.470 8 H 0.091 0.909 9 C 0.225 3.775 10 C -0.270 4.270 11 C 0.045 3.955 12 C -0.145 4.145 13 C 0.106 3.894 14 N -0.556 5.556 15 H 0.440 0.560 16 C 0.262 3.738 17 N -0.476 5.476 18 C 0.120 3.880 19 C 0.014 3.986 20 F -0.133 7.133 21 C -0.073 4.073 22 C -0.128 4.128 23 C -0.296 4.296 24 C 0.105 3.895 25 N -0.523 5.523 26 H 0.278 0.722 27 H 0.113 0.887 28 H 0.214 0.786 29 H 0.209 0.791 30 H 0.138 0.862 31 H 0.112 0.888 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.791 -13.762 0.109 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.381 5.381 2 C -0.196 4.196 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.502 4.502 8 H 0.109 0.891 9 C 0.100 3.900 10 C -0.293 4.293 11 C 0.038 3.962 12 C -0.152 4.152 13 C -0.022 4.022 14 N -0.163 5.163 15 H 0.281 0.719 16 C 0.029 3.971 17 N -0.188 5.188 18 C -0.047 4.047 19 C -0.009 4.009 20 F -0.112 7.112 21 C -0.100 4.100 22 C -0.135 4.135 23 C -0.319 4.319 24 C -0.058 4.058 25 N -0.237 5.237 26 H 0.088 0.912 27 H 0.131 0.869 28 H 0.231 0.769 29 H 0.225 0.775 30 H 0.156 0.844 31 H 0.130 0.870 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.902 -13.486 -0.268 14.723 hybrid contribution -0.183 0.475 0.348 0.617 sum 5.719 -13.010 0.080 14.212 Atomic orbital electron populations 1.70236 1.08917 1.29037 1.29917 1.26974 0.95666 1.04512 0.92498 0.85226 0.78606 0.75551 0.80089 1.18070 1.19529 1.18425 1.19962 0.94797 0.90357 1.45058 0.89137 1.18974 0.88744 0.93191 0.89078 1.21945 0.99062 0.92221 1.16036 1.18091 0.92480 0.90118 0.95529 1.18938 1.02204 0.93260 1.00783 1.22380 0.95397 0.84530 0.99917 1.41320 1.33497 1.13336 1.28141 0.71853 1.18508 0.94451 0.91048 0.93076 1.66635 1.24455 1.19104 1.08599 1.23019 0.89486 0.99856 0.92375 1.18391 0.95645 0.95952 0.90879 1.91495 1.69699 1.94040 1.55944 1.21080 0.98308 0.96457 0.94127 1.19678 0.99296 0.95778 0.98794 1.21514 0.94065 0.97705 1.18631 1.22809 0.99678 0.88946 0.94386 1.68695 1.07969 1.28417 1.18604 0.91173 0.86917 0.76939 0.77495 0.84414 0.87041 0.84839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -41.26 11.46 21.84 0.25 -41.01 16 2 C 0.02 1.27 5.50 85.29 0.47 1.74 16 3 Si 0.99 37.82 29.56 68.60 2.03 39.84 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.47 -25.25 9.14 23.49 0.21 -25.03 16 8 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 9 C 0.23 12.36 6.55 40.18 0.26 12.62 16 10 C -0.27 -12.80 9.56 23.10 0.22 -12.58 16 11 C 0.04 1.91 5.82 -19.89 -0.12 1.80 16 12 C -0.14 -4.96 5.80 -18.94 -0.11 -5.07 16 13 C 0.11 2.68 11.73 83.37 0.98 3.66 16 14 N -0.56 -12.03 6.02 -191.65 -1.15 -13.19 16 15 H 0.44 6.10 8.96 -92.71 -0.83 5.26 16 16 C 0.26 7.24 8.41 133.80 1.13 8.37 16 17 N -0.48 -12.11 10.38 -192.56 -2.00 -14.11 16 18 C 0.12 2.68 11.14 84.87 0.95 3.62 16 19 C 0.01 0.38 7.34 22.46 0.16 0.54 16 20 F -0.13 -3.41 17.28 44.97 0.78 -2.64 16 21 C -0.07 -2.26 10.20 22.62 0.23 -2.03 16 22 C -0.13 -4.14 6.36 -20.08 -0.13 -4.26 16 23 C -0.30 -13.00 9.88 22.77 0.23 -12.77 16 24 C 0.11 5.14 11.16 84.77 0.95 6.09 16 25 N -0.52 -29.36 7.85 -189.43 -1.49 -30.84 16 26 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 27 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 28 H 0.21 4.04 8.06 -2.91 -0.02 4.02 16 29 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 32 H 0.13 5.83 8.06 -2.91 -0.02 5.80 16 Total: -1.00 -67.39 295.92 4.20 -63.19 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.36 Total: 22.07 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 5.43 Total: -23.32 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -4.39 Total: -99.14 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 37.82 SS G_CDS: 2.03 Total: 39.84 kcal Total: -67.39 4.20 -63.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245434174.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.364 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds