Wall clock time and date at job start Tue Mar 31 2020 05:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48501 * 109.46941 * 240.00102 * 3 2 1 5 5 H 1.48505 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47092 * 119.99980 * 3 2 1 7 7 C 1.40017 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99995 * 173.69799 * 7 2 1 9 9 C 1.41291 * 120.00183 * 353.96833 * 7 2 1 10 10 C 1.40889 * 120.14119 * 185.88178 * 9 7 2 11 11 N 1.31895 * 120.01207 * 180.02562 * 10 9 7 12 12 C 1.32156 * 120.30825 * 359.97438 * 11 10 9 13 13 C 1.40231 * 120.27886 * 359.97438 * 12 11 10 14 14 C 1.47703 * 120.00840 * 180.02562 * 13 12 11 15 15 C 1.35765 * 125.24206 * 179.69686 * 14 13 12 16 16 C 1.46104 * 106.94740 * 179.85658 * 15 14 13 17 17 C 1.39895 * 133.75295 * 180.10888 * 16 15 14 18 18 C 1.37722 * 119.63260 * 180.32244 * 17 16 15 19 19 F 1.35097 * 119.82949 * 180.02562 * 18 17 16 20 20 C 1.39081 * 120.34526 * 359.97438 * 18 17 16 21 21 C 1.37724 * 120.67932 * 0.02562 * 20 18 17 22 22 C 1.39111 * 119.99249 * 0.02562 * 21 20 18 23 23 N 1.37640 * 125.24172 * 359.97438 * 14 13 12 24 24 H 0.97005 * 125.10736 * 0.02562 * 23 14 13 25 25 N 1.32766 * 119.98235 * 359.79073 * 13 12 11 26 26 H 0.96997 * 120.00366 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99156 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.86054 * 179.97438 * 12 11 10 29 29 H 1.08006 * 126.52274 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.18149 * 0.33856 * 17 16 15 31 31 H 1.07993 * 119.66185 * 180.02562 * 20 18 17 32 32 H 1.07997 * 120.00182 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2153 -0.1032 9 6 1.3070 -2.4329 0.1275 10 6 2.0144 -3.6450 0.2518 11 7 1.3579 -4.7827 0.3707 12 6 0.0364 -4.7930 0.3744 13 6 -0.6803 -3.5938 0.2525 14 6 -2.1572 -3.6121 0.2580 15 6 -2.9546 -2.5183 0.1531 16 6 -4.3359 -2.9923 0.1993 17 6 -5.5798 -2.3553 0.1366 18 6 -6.7330 -3.1040 0.2166 19 9 -7.9364 -2.4931 0.1560 20 6 -6.6651 -4.4859 0.3584 21 6 -5.4478 -5.1269 0.4215 22 6 -4.2697 -4.3912 0.3439 23 7 -2.9371 -4.7401 0.3756 24 1 -2.5993 -5.6447 0.4680 25 7 -0.0309 -2.4416 0.1369 26 1 -0.4850 0.8400 -0.0004 27 1 3.0944 -3.6424 0.2498 28 1 -0.4938 -5.7288 0.4717 29 1 -2.6297 -1.4932 0.0525 30 1 -5.6355 -1.2825 0.0259 31 1 -7.5764 -5.0623 0.4196 32 1 -5.4079 -6.2005 0.5321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245573441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:30 Heat of formation + Delta-G solvation = 47.606506 kcal Electronic energy + Delta-G solvation = -20358.873673 eV Core-core repulsion = 17005.860446 eV Total energy + Delta-G solvation = -3353.013227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.61606 -40.92441 -38.96817 -36.40466 -34.21158 -32.49498 -31.68161 -30.80010 -28.76777 -28.08117 -26.21732 -23.85320 -22.39196 -21.98180 -21.17748 -19.90456 -18.04530 -17.60783 -16.90629 -16.12614 -15.67678 -15.43042 -15.37595 -15.07382 -14.75215 -14.20152 -13.88537 -13.42030 -13.04774 -12.97653 -12.82559 -12.47400 -12.24447 -11.72361 -11.60278 -11.46065 -11.14162 -10.89722 -10.72461 -10.52414 -10.01490 -9.73581 -9.69889 -9.28935 -8.36531 -7.68858 -7.65817 -7.19056 -6.69585 -4.87053 1.01199 1.56544 2.09599 2.71706 2.95562 2.96883 3.05734 3.25441 3.44532 3.74082 3.91726 4.45095 4.52077 4.76009 5.00736 5.08350 5.39056 5.53096 5.57821 5.58757 5.73667 5.86242 6.05823 6.15270 6.21353 6.31756 6.40883 6.46560 6.70299 6.75539 6.90530 7.05937 7.17906 7.36115 7.43629 7.75985 7.85894 8.21036 8.46138 9.01727 9.57389 9.96850 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004612 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.633575 B = 6070.150103 C = 7499.616241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.703 5.703 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.404 4.404 8 H 0.094 0.906 9 C 0.208 3.792 10 C -0.057 4.057 11 N -0.425 5.425 12 C -0.117 4.117 13 C 0.154 3.846 14 C 0.153 3.847 15 C -0.151 4.151 16 C -0.086 4.086 17 C -0.101 4.101 18 C 0.058 3.942 19 F -0.149 7.149 20 C -0.139 4.139 21 C -0.102 4.102 22 C 0.092 3.908 23 N -0.587 5.587 24 H 0.415 0.585 25 N -0.431 5.431 26 H 0.281 0.719 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.166 0.834 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.365 -3.273 0.421 8.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.163 4.163 3 Si 0.739 3.261 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.435 4.435 8 H 0.112 0.888 9 C 0.082 3.918 10 C -0.229 4.229 11 N -0.136 5.136 12 C -0.275 4.275 13 C 0.006 3.994 14 C 0.045 3.955 15 C -0.177 4.177 16 C -0.092 4.092 17 C -0.121 4.121 18 C 0.037 3.963 19 F -0.127 7.127 20 C -0.159 4.159 21 C -0.122 4.122 22 C -0.017 4.017 23 N -0.191 5.191 24 H 0.252 0.748 25 N -0.149 5.149 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.183 0.817 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.510 -3.206 0.430 9.104 hybrid contribution 0.296 0.286 0.049 0.414 sum -8.214 -2.921 0.479 8.731 Atomic orbital electron populations 1.70033 1.07407 1.28946 1.25873 1.26152 0.95065 1.01578 0.93538 0.86236 0.80084 0.79635 0.80178 1.18654 1.19919 1.18637 1.19662 0.95158 0.89088 1.39583 0.88795 1.19333 0.88336 0.93552 0.90620 1.23264 0.99453 0.89168 1.10969 1.67625 1.08507 1.30121 1.07373 1.22285 0.91045 0.96251 1.17966 1.19791 0.89755 0.92300 0.97555 1.18506 0.89773 0.85038 1.02157 1.22024 0.87919 0.99397 1.08324 1.19057 0.93459 0.91966 1.04694 1.20445 0.89567 1.00183 1.01887 1.17233 0.80094 0.90868 1.08080 1.91446 1.43247 1.83520 1.94534 1.20622 0.97947 0.92567 1.04733 1.19764 0.88899 0.99081 1.04493 1.18218 0.84474 0.94371 1.04606 1.41783 1.03513 1.08978 1.64805 0.74770 1.69524 1.08090 1.22355 1.14918 0.90778 0.84534 0.86277 0.81685 0.84832 0.84953 0.85523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -16.85 11.51 55.55 0.64 -16.21 16 2 C 0.06 1.48 5.49 -17.35 -0.10 1.38 16 3 Si 0.92 16.88 29.56 -169.99 -5.03 11.85 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 5 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 7 C -0.40 -9.75 9.15 -37.76 -0.35 -10.10 16 8 H 0.09 2.06 7.85 -52.49 -0.41 1.65 16 9 C 0.21 5.29 6.54 -84.84 -0.56 4.73 16 10 C -0.06 -1.37 10.98 -16.52 -0.18 -1.55 16 11 N -0.43 -10.03 10.47 -11.99 -0.13 -10.16 16 12 C -0.12 -2.58 10.88 -16.66 -0.18 -2.77 16 13 C 0.15 3.56 6.75 -82.85 -0.56 3.00 16 14 C 0.15 3.06 6.88 -82.28 -0.57 2.49 16 15 C -0.15 -2.98 10.72 -37.31 -0.40 -3.38 16 16 C -0.09 -1.48 6.35 -105.16 -0.67 -2.15 16 17 C -0.10 -1.55 10.08 -39.15 -0.39 -1.95 16 18 C 0.06 0.82 7.28 -39.46 -0.29 0.53 16 19 F -0.15 -2.12 17.26 2.25 0.04 -2.08 16 20 C -0.14 -1.73 9.99 -39.46 -0.39 -2.12 16 21 C -0.10 -1.28 10.06 -39.45 -0.40 -1.68 16 22 C 0.09 1.44 7.26 -83.90 -0.61 0.83 16 23 N -0.59 -9.44 5.98 -7.28 -0.04 -9.49 16 24 H 0.41 5.50 7.93 -40.82 -0.32 5.18 16 25 N -0.43 -11.01 7.73 -7.58 -0.06 -11.07 16 26 H 0.28 6.09 8.29 -40.82 -0.34 5.75 16 27 H 0.14 2.90 8.06 -52.48 -0.42 2.48 16 28 H 0.12 2.22 7.05 -52.49 -0.37 1.85 16 29 H 0.17 3.47 8.06 -52.48 -0.42 3.04 16 30 H 0.13 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 293.66 15.07 4.43 4.43 Total: -1.00 -27.61 293.66 -8.14 -35.75 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -2.35 Total: 9.71 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -5.63 Total: -12.74 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.41 Total: -46.92 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.61 -8.14 -35.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245573441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.356 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds