Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99969 * 2 1 4 4 H 1.48501 * 109.46941 * 240.00102 * 3 2 1 5 5 H 1.48505 * 109.46774 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47092 * 119.99980 * 3 2 1 7 7 C 1.40017 * 120.00212 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99995 * 173.69799 * 7 2 1 9 9 C 1.41291 * 120.00183 * 353.96833 * 7 2 1 10 10 C 1.40889 * 120.14119 * 185.88178 * 9 7 2 11 11 N 1.31895 * 120.01207 * 180.02562 * 10 9 7 12 12 C 1.32156 * 120.30825 * 359.97438 * 11 10 9 13 13 C 1.40231 * 120.27886 * 359.97438 * 12 11 10 14 14 C 1.47703 * 120.00840 * 180.02562 * 13 12 11 15 15 C 1.35765 * 125.24206 * 179.69686 * 14 13 12 16 16 C 1.46104 * 106.94740 * 179.85658 * 15 14 13 17 17 C 1.39895 * 133.75295 * 180.10888 * 16 15 14 18 18 C 1.37722 * 119.63260 * 180.32244 * 17 16 15 19 19 F 1.35097 * 119.82949 * 180.02562 * 18 17 16 20 20 C 1.39081 * 120.34526 * 359.97438 * 18 17 16 21 21 C 1.37724 * 120.67932 * 0.02562 * 20 18 17 22 22 C 1.39111 * 119.99249 * 0.02562 * 21 20 18 23 23 N 1.37640 * 125.24172 * 359.97438 * 14 13 12 24 24 H 0.97005 * 125.10736 * 0.02562 * 23 14 13 25 25 N 1.32766 * 119.98235 * 359.79073 * 13 12 11 26 26 H 0.96997 * 120.00366 * 0.02562 * 1 2 3 27 27 H 1.08003 * 119.99156 * 0.02562 * 10 9 7 28 28 H 1.07998 * 119.86054 * 179.97438 * 12 11 10 29 29 H 1.08006 * 126.52274 * 359.97438 * 15 14 13 30 30 H 1.07998 * 120.18149 * 0.33856 * 17 16 15 31 31 H 1.07993 * 119.66185 * 180.02562 * 20 18 17 32 32 H 1.07997 * 120.00182 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6964 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2126 -0.0005 8 1 3.0827 -1.2153 -0.1032 9 6 1.3070 -2.4329 0.1275 10 6 2.0144 -3.6450 0.2518 11 7 1.3579 -4.7827 0.3707 12 6 0.0364 -4.7930 0.3744 13 6 -0.6803 -3.5938 0.2525 14 6 -2.1572 -3.6121 0.2580 15 6 -2.9546 -2.5183 0.1531 16 6 -4.3359 -2.9923 0.1993 17 6 -5.5798 -2.3553 0.1366 18 6 -6.7330 -3.1040 0.2166 19 9 -7.9364 -2.4931 0.1560 20 6 -6.6651 -4.4859 0.3584 21 6 -5.4478 -5.1269 0.4215 22 6 -4.2697 -4.3912 0.3439 23 7 -2.9371 -4.7401 0.3756 24 1 -2.5993 -5.6447 0.4680 25 7 -0.0309 -2.4416 0.1369 26 1 -0.4850 0.8400 -0.0004 27 1 3.0944 -3.6424 0.2498 28 1 -0.4938 -5.7288 0.4717 29 1 -2.6297 -1.4932 0.0525 30 1 -5.6355 -1.2825 0.0259 31 1 -7.5764 -5.0623 0.4196 32 1 -5.4079 -6.2005 0.5321 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245573441.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = 32.164644 kcal Electronic energy + Delta-G solvation = -20359.543282 eV Core-core repulsion = 17005.860446 eV Total energy + Delta-G solvation = -3353.682837 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.74662 -42.24230 -40.70408 -37.62088 -35.97426 -34.20586 -32.96184 -32.50214 -30.01921 -29.49300 -27.96021 -25.40051 -24.08789 -23.24526 -22.51901 -21.37369 -19.66759 -18.99675 -18.14818 -17.62985 -17.15891 -17.14884 -16.63970 -16.51472 -16.11868 -15.60886 -15.11130 -14.80602 -14.73729 -14.29473 -14.02329 -13.90186 -13.50444 -13.43514 -13.25899 -13.00694 -12.59824 -12.37489 -12.07324 -11.85710 -11.73702 -11.54910 -11.18384 -10.74015 -10.03051 -9.44959 -8.94450 -8.62515 -8.43187 -6.70683 -0.31152 0.37644 0.57295 0.98346 1.42715 1.53419 1.55787 1.90178 1.95366 2.18633 2.72349 2.78898 3.25792 3.57709 3.67484 3.75604 3.97488 4.06552 4.21485 4.25230 4.32994 4.38329 4.52034 4.82200 4.90686 4.99818 5.06664 5.09062 5.13825 5.22515 5.27367 5.62333 5.72997 5.78709 6.03450 6.11409 6.40704 6.57541 6.65635 7.21021 7.77747 8.26936 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019418 B = 0.004612 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.633575 B = 6070.150103 C = 7499.616241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.022 3.978 3 Si 0.993 3.007 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.257 1.257 7 C -0.429 4.429 8 H 0.108 0.892 9 C 0.178 3.822 10 C -0.076 4.076 11 N -0.434 5.434 12 C -0.121 4.121 13 C 0.145 3.855 14 C 0.131 3.869 15 C -0.164 4.164 16 C -0.111 4.111 17 C -0.115 4.115 18 C 0.056 3.944 19 F -0.148 7.148 20 C -0.123 4.123 21 C -0.090 4.090 22 C 0.092 3.908 23 N -0.573 5.573 24 H 0.428 0.572 25 N -0.462 5.462 26 H 0.286 0.714 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.171 0.829 32 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.936 -4.456 0.620 10.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.460 4.460 8 H 0.126 0.874 9 C 0.052 3.948 10 C -0.246 4.246 11 N -0.145 5.145 12 C -0.279 4.279 13 C -0.003 4.003 14 C 0.022 3.978 15 C -0.190 4.190 16 C -0.116 4.116 17 C -0.134 4.134 18 C 0.036 3.964 19 F -0.127 7.127 20 C -0.142 4.142 21 C -0.110 4.110 22 C -0.017 4.017 23 N -0.178 5.178 24 H 0.269 0.731 25 N -0.181 5.181 26 H 0.097 0.903 27 H 0.172 0.828 28 H 0.172 0.828 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.188 0.812 32 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.076 -4.430 0.629 11.025 hybrid contribution 0.567 0.591 -0.012 0.819 sum -9.509 -3.839 0.617 10.273 Atomic orbital electron populations 1.70138 1.09047 1.30180 1.26318 1.27092 0.95784 1.04841 0.92514 0.85078 0.78570 0.74745 0.80361 1.17872 1.19437 1.18112 1.20111 0.96077 0.89643 1.40163 0.87392 1.19793 0.88870 0.94752 0.91424 1.23498 1.00350 0.88987 1.11796 1.67666 1.09244 1.29975 1.07604 1.22810 0.90827 0.97402 1.16908 1.20243 0.91425 0.92094 0.96580 1.18187 0.88604 0.86616 1.04358 1.21895 0.89945 0.98425 1.08754 1.19044 0.92677 0.93206 1.06697 1.20533 0.89617 1.00731 1.02549 1.17414 0.79589 0.91793 1.07593 1.91454 1.43011 1.83731 1.94466 1.21078 0.99402 0.91731 1.02034 1.20210 0.87306 1.00958 1.02534 1.18561 0.84959 0.93936 1.04218 1.41582 1.03344 1.08565 1.64300 0.73135 1.69506 1.08468 1.23913 1.16178 0.90268 0.82822 0.82812 0.84370 0.84638 0.81170 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.85 11.51 21.83 0.25 -36.60 16 2 C 0.02 1.04 5.49 85.29 0.47 1.51 16 3 Si 0.99 34.86 29.56 68.60 2.03 36.89 16 4 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 7 C -0.43 -21.36 9.15 23.45 0.21 -21.14 16 8 H 0.11 4.83 7.85 -2.91 -0.02 4.80 16 9 C 0.18 9.39 6.54 40.24 0.26 9.65 16 10 C -0.08 -3.73 10.98 85.33 0.94 -2.79 16 11 N -0.43 -20.64 10.47 -191.84 -2.01 -22.65 16 12 C -0.12 -5.35 10.88 85.13 0.93 -4.43 16 13 C 0.14 6.87 6.75 41.99 0.28 7.16 16 14 C 0.13 5.36 6.88 40.16 0.28 5.63 16 15 C -0.16 -6.77 10.72 23.74 0.25 -6.52 16 16 C -0.11 -3.82 6.35 -20.21 -0.13 -3.95 16 17 C -0.11 -3.46 10.08 22.55 0.23 -3.23 16 18 C 0.06 1.46 7.28 22.35 0.16 1.63 16 19 F -0.15 -3.84 17.26 44.97 0.78 -3.07 16 20 C -0.12 -2.50 9.99 22.35 0.22 -2.28 16 21 C -0.09 -1.87 10.06 22.36 0.22 -1.65 16 22 C 0.09 2.68 7.26 39.04 0.28 2.97 16 23 N -0.57 -17.71 5.98 -176.95 -1.06 -18.77 16 24 H 0.43 10.42 7.93 -92.70 -0.74 9.68 16 25 N -0.46 -24.72 7.73 -177.89 -1.37 -26.09 16 26 H 0.29 12.97 8.29 -92.71 -0.77 12.20 16 27 H 0.15 6.67 8.06 -2.91 -0.02 6.65 16 28 H 0.15 5.52 7.05 -2.91 -0.02 5.50 16 29 H 0.14 6.34 8.06 -2.91 -0.02 6.32 16 30 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 32 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -62.40 293.66 3.69 -58.72 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.46 Total: 29.02 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 4.62 Total: -17.45 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -4.19 Total: -104.11 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.78 Total: -3.07 kcal Atomic # 14 Polarization: 34.86 SS G_CDS: 2.03 Total: 36.89 kcal Total: -62.40 3.69 -58.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245573441.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.880 kcal (2) G-P(sol) polarization free energy of solvation -62.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds