Wall clock time and date at job start Tue Mar 31 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47497 * 269.99836 * 3 2 1 5 5 H 1.48503 * 109.47111 * 30.00340 * 3 2 1 6 6 H 1.48504 * 109.46985 * 149.99994 * 3 2 1 7 7 C 1.40117 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.40536 * 120.00098 * 359.97438 * 7 2 1 10 10 N 1.34147 * 120.59655 * 0.27766 * 9 7 2 11 11 C 1.31466 * 119.87458 * 180.24968 * 10 9 7 12 12 C 1.39153 * 121.18394 * 359.48615 * 11 10 9 13 13 N 1.31764 * 121.25483 * 0.24111 * 12 11 10 14 14 C 1.33284 * 120.01516 * 0.02562 * 13 12 11 15 15 C 1.46938 * 120.56649 * 179.97438 * 14 13 12 16 16 C 1.36339 * 125.43457 * 325.00273 * 15 14 13 17 17 C 1.41484 * 107.73275 * 180.02562 * 16 15 14 18 18 C 1.40187 * 133.33479 * 180.02562 * 17 16 15 19 19 C 1.36642 * 119.79541 * 179.97438 * 18 17 16 20 20 F 1.35100 * 119.72267 * 179.97438 * 19 18 17 21 21 C 1.39107 * 120.55367 * 359.97438 * 19 18 17 22 22 C 1.37801 * 120.62648 * 0.02562 * 21 19 18 23 23 C 1.39054 * 119.85873 * 0.02562 * 22 21 19 24 24 N 1.37876 * 133.13094 * 180.33792 * 23 22 21 25 25 H 0.96998 * 125.61992 * 359.97141 * 24 23 22 26 26 H 0.97003 * 120.00256 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.41071 * 179.77354 * 11 10 9 28 28 H 1.08005 * 119.37150 * 180.25421 * 12 11 10 29 29 H 1.07994 * 126.13698 * 359.96398 * 16 15 14 30 30 H 1.07998 * 120.10384 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.68403 * 179.97438 * 21 19 18 32 32 H 1.07996 * 120.07139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4886 2.0465 -1.4000 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4402 0.7001 7 6 2.0077 -1.2134 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3052 -2.4305 -0.0005 10 7 -0.0362 -2.4446 -0.0056 11 6 -0.6791 -3.5914 -0.0006 12 6 0.0070 -4.8020 -0.0007 13 7 1.3240 -4.8414 -0.0011 14 6 2.0250 -3.7078 -0.0009 15 6 3.4941 -3.7376 -0.0008 16 6 4.2658 -4.6635 0.6363 17 6 5.6206 -4.3382 0.3902 18 6 6.8355 -4.9192 0.7795 19 6 8.0154 -4.3623 0.3734 20 9 9.1854 -4.9232 0.7498 21 6 8.0219 -3.2227 -0.4244 22 6 6.8395 -2.6351 -0.8187 23 6 5.6263 -3.1832 -0.4170 24 7 4.3123 -2.8357 -0.6484 25 1 4.0125 -2.0810 -1.1790 26 1 -0.4851 0.8400 -0.0004 27 1 -1.7591 -3.5939 -0.0010 28 1 -0.5507 -5.7269 -0.0006 29 1 3.9074 -5.4955 1.2243 30 1 6.8390 -5.8047 1.3977 31 1 8.9626 -2.7941 -0.7369 32 1 6.8550 -1.7503 -1.4377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245573464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:34 Heat of formation + Delta-G solvation = 49.336546 kcal Electronic energy + Delta-G solvation = -20669.964899 eV Core-core repulsion = 17317.026692 eV Total energy + Delta-G solvation = -3352.938207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -48.51073 -40.89660 -38.79592 -36.23430 -34.48525 -32.44220 -31.73931 -30.77932 -28.68166 -28.04580 -26.24902 -23.81706 -22.26872 -21.81992 -21.16378 -19.89897 -18.04994 -17.55250 -16.98780 -16.22295 -15.93588 -15.26283 -15.18144 -15.02870 -14.47753 -13.93605 -13.83528 -13.41994 -13.04070 -12.84783 -12.78253 -12.63495 -12.15527 -11.82896 -11.74729 -11.62303 -11.12516 -10.84714 -10.61434 -10.53399 -10.17989 -9.84870 -9.57499 -9.37965 -8.31649 -7.74291 -7.56400 -7.14386 -6.85189 -5.06323 1.19664 1.77347 2.09817 2.62590 2.79774 2.82998 2.93494 3.41673 3.53929 3.63980 4.11238 4.31364 4.63688 4.94074 5.20128 5.29798 5.43064 5.58364 5.66521 5.76414 5.78346 5.87877 6.16566 6.23132 6.27720 6.44548 6.47697 6.51520 6.61340 6.68668 6.80021 7.15174 7.27925 7.34607 7.51433 7.64397 7.95042 8.04953 8.27610 8.95120 9.51086 9.71561 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.005680 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.835320 B = 4928.202461 C = 6436.466585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.689 5.689 2 C 0.062 3.938 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.399 4.399 8 H 0.095 0.905 9 C 0.223 3.777 10 N -0.456 5.456 11 C 0.101 3.899 12 C -0.116 4.116 13 N -0.391 5.391 14 C -0.041 4.041 15 C 0.219 3.781 16 C -0.213 4.213 17 C -0.064 4.064 18 C -0.119 4.119 19 C 0.065 3.935 20 F -0.152 7.152 21 C -0.155 4.155 22 C -0.090 4.090 23 C 0.069 3.931 24 N -0.576 5.576 25 H 0.423 0.577 26 H 0.284 0.716 27 H 0.133 0.867 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.982 -0.155 -1.156 7.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.307 5.307 2 C -0.167 4.167 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.178 1.178 7 C -0.428 4.428 8 H 0.113 0.887 9 C 0.098 3.902 10 N -0.172 5.172 11 C -0.071 4.071 12 C -0.279 4.279 13 N -0.103 5.103 14 C -0.188 4.188 15 C 0.109 3.891 16 C -0.238 4.238 17 C -0.070 4.070 18 C -0.139 4.139 19 C 0.045 3.955 20 F -0.131 7.131 21 C -0.175 4.175 22 C -0.111 4.111 23 C -0.039 4.039 24 N -0.180 5.180 25 H 0.265 0.735 26 H 0.096 0.904 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.705 0.121 -1.232 6.819 hybrid contribution 0.166 0.927 -0.112 0.949 sum 6.871 1.049 -1.344 7.080 Atomic orbital electron populations 1.70042 1.07503 1.29358 1.23818 1.26232 0.95166 1.01768 0.93563 0.86217 0.80780 0.79754 0.79931 1.18675 1.19284 1.17839 1.19753 0.94929 0.89329 1.38821 0.88736 1.20364 0.89074 0.91471 0.89278 1.69599 1.07162 1.24748 1.15655 1.23537 1.00264 0.90220 0.93090 1.22481 0.90367 0.97904 1.17126 1.67638 1.07993 1.29547 1.05150 1.20267 0.89230 0.90430 1.18881 1.18166 0.88690 0.88844 0.93449 1.20599 0.89579 1.03722 1.09900 1.17916 0.93340 0.95696 1.00019 1.20176 0.89811 1.01257 1.02636 1.16963 0.80771 0.95753 1.01998 1.91433 1.46489 1.84851 1.90334 1.20566 0.98208 0.96804 1.01908 1.19798 0.88864 1.00450 1.01938 1.18308 0.85117 0.97921 1.02572 1.42460 1.03432 1.27424 1.44725 0.73547 0.90400 0.84916 0.85018 0.84007 0.85347 0.85236 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -16.09 11.50 55.56 0.64 -15.46 16 2 C 0.06 1.38 5.50 -17.32 -0.10 1.29 16 3 Si 0.91 16.11 29.56 -169.99 -5.02 11.08 16 4 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 16 6 H -0.25 -4.50 7.11 56.52 0.40 -4.10 16 7 C -0.40 -9.27 8.33 -38.01 -0.32 -9.58 16 8 H 0.09 2.02 4.85 -52.48 -0.25 1.76 16 9 C 0.22 5.55 6.71 -82.61 -0.55 4.99 16 10 N -0.46 -11.41 8.06 -9.52 -0.08 -11.49 16 11 C 0.10 2.21 11.17 -17.37 -0.19 2.02 16 12 C -0.12 -2.49 11.17 -17.24 -0.19 -2.68 16 13 N -0.39 -9.12 10.37 -7.95 -0.08 -9.20 16 14 C -0.04 -0.97 6.87 -80.34 -0.55 -1.52 16 15 C 0.22 4.67 6.37 -82.28 -0.52 4.14 16 16 C -0.21 -4.24 10.71 -39.03 -0.42 -4.66 16 17 C -0.06 -1.17 6.16 -106.92 -0.66 -1.83 16 18 C -0.12 -1.93 10.03 -39.43 -0.40 -2.33 16 19 C 0.07 1.01 7.24 -39.84 -0.29 0.72 16 20 F -0.15 -2.30 17.25 2.25 0.04 -2.26 16 21 C -0.15 -2.17 10.00 -39.42 -0.39 -2.56 16 22 C -0.09 -1.31 10.07 -39.44 -0.40 -1.71 16 23 C 0.07 1.22 7.26 -83.83 -0.61 0.61 16 24 N -0.58 -10.79 5.02 -7.27 -0.04 -10.82 16 25 H 0.42 7.39 7.04 -40.82 -0.29 7.10 16 26 H 0.28 5.94 8.29 -40.82 -0.34 5.60 16 27 H 0.13 2.45 8.06 -52.49 -0.42 2.02 16 28 H 0.13 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 30 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 289.19 15.07 4.36 4.36 Total: -1.00 -27.15 289.19 -7.99 -35.13 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -2.21 Total: 11.77 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -5.59 Total: -13.12 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.44 Total: -46.97 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 16.11 SS G_CDS: -5.02 Total: 11.08 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.15 -7.99 -35.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245573464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.470 kcal (2) G-P(sol) polarization free energy of solvation -27.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds