Wall clock time and date at job start Tue Mar 31 2020 05:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86800 * 119.99776 * 2 1 4 4 H 1.48499 * 109.47497 * 269.99836 * 3 2 1 5 5 H 1.48503 * 109.47111 * 30.00340 * 3 2 1 6 6 H 1.48504 * 109.46985 * 149.99994 * 3 2 1 7 7 C 1.40117 * 120.00307 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00556 * 179.97438 * 7 2 1 9 9 C 1.40536 * 120.00098 * 359.97438 * 7 2 1 10 10 N 1.34147 * 120.59655 * 0.27766 * 9 7 2 11 11 C 1.31466 * 119.87458 * 180.24968 * 10 9 7 12 12 C 1.39153 * 121.18394 * 359.48615 * 11 10 9 13 13 N 1.31764 * 121.25483 * 0.24111 * 12 11 10 14 14 C 1.33284 * 120.01516 * 0.02562 * 13 12 11 15 15 C 1.46938 * 120.56649 * 179.97438 * 14 13 12 16 16 C 1.36339 * 125.43457 * 325.00273 * 15 14 13 17 17 C 1.41484 * 107.73275 * 180.02562 * 16 15 14 18 18 C 1.40187 * 133.33479 * 180.02562 * 17 16 15 19 19 C 1.36642 * 119.79541 * 179.97438 * 18 17 16 20 20 F 1.35100 * 119.72267 * 179.97438 * 19 18 17 21 21 C 1.39107 * 120.55367 * 359.97438 * 19 18 17 22 22 C 1.37801 * 120.62648 * 0.02562 * 21 19 18 23 23 C 1.39054 * 119.85873 * 0.02562 * 22 21 19 24 24 N 1.37876 * 133.13094 * 180.33792 * 23 22 21 25 25 H 0.96998 * 125.61992 * 359.97141 * 24 23 22 26 26 H 0.97003 * 120.00256 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.41071 * 179.77354 * 11 10 9 28 28 H 1.08005 * 119.37150 * 180.25421 * 12 11 10 29 29 H 1.07994 * 126.13698 * 359.96398 * 16 15 14 30 30 H 1.07998 * 120.10384 * 0.02562 * 18 17 16 31 31 H 1.07995 * 119.68403 * 179.97438 * 21 19 18 32 32 H 1.07996 * 120.07139 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4886 2.0465 -1.4000 5 1 1.4385 2.6527 0.7001 6 1 3.5386 1.4402 0.7001 7 6 2.0077 -1.2134 -0.0005 8 1 3.0878 -1.2135 -0.0010 9 6 1.3052 -2.4305 -0.0005 10 7 -0.0362 -2.4446 -0.0056 11 6 -0.6791 -3.5914 -0.0006 12 6 0.0070 -4.8020 -0.0007 13 7 1.3240 -4.8414 -0.0011 14 6 2.0250 -3.7078 -0.0009 15 6 3.4941 -3.7376 -0.0008 16 6 4.2658 -4.6635 0.6363 17 6 5.6206 -4.3382 0.3902 18 6 6.8355 -4.9192 0.7795 19 6 8.0154 -4.3623 0.3734 20 9 9.1854 -4.9232 0.7498 21 6 8.0219 -3.2227 -0.4244 22 6 6.8395 -2.6351 -0.8187 23 6 5.6263 -3.1832 -0.4170 24 7 4.3123 -2.8357 -0.6484 25 1 4.0125 -2.0810 -1.1790 26 1 -0.4851 0.8400 -0.0004 27 1 -1.7591 -3.5939 -0.0010 28 1 -0.5507 -5.7269 -0.0006 29 1 3.9074 -5.4955 1.2243 30 1 6.8390 -5.8047 1.3977 31 1 8.9626 -2.7941 -0.7369 32 1 6.8550 -1.7503 -1.4377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245573464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:32 Heat of formation + Delta-G solvation = 34.728337 kcal Electronic energy + Delta-G solvation = -20670.598359 eV Core-core repulsion = 17317.026692 eV Total energy + Delta-G solvation = -3353.571667 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -49.71537 -42.29233 -40.48189 -37.53833 -36.16424 -34.14797 -33.08379 -32.42472 -30.02937 -29.49704 -27.90410 -25.34976 -23.96202 -23.15834 -22.53247 -21.40562 -19.72068 -18.96595 -18.36509 -17.73295 -17.33832 -16.86063 -16.47211 -16.37463 -15.98578 -15.41324 -15.14549 -14.81559 -14.64836 -14.28628 -14.18023 -13.97721 -13.53181 -13.39044 -13.27495 -13.08513 -12.64401 -12.20698 -12.04523 -11.85449 -11.77361 -11.61187 -11.14442 -10.82754 -9.94764 -9.45199 -8.91406 -8.63657 -8.49356 -6.79028 -0.17004 0.44394 0.56884 1.00490 1.34851 1.47046 1.50839 1.91817 2.07748 2.18326 2.65356 2.82386 3.38355 3.65858 3.73556 3.77542 4.08776 4.09613 4.22604 4.30056 4.41457 4.46800 4.65070 4.82219 4.85848 4.96604 5.03297 5.08548 5.15238 5.28522 5.38306 5.65152 5.81475 5.82336 5.96467 6.17200 6.29853 6.52719 6.64752 7.22950 7.78156 8.10770 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.016774 B = 0.005680 C = 0.004349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.835320 B = 4928.202461 C = 6436.466585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.022 3.978 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.416 4.416 8 H 0.107 0.893 9 C 0.192 3.808 10 N -0.489 5.489 11 C 0.090 3.910 12 C -0.121 4.121 13 N -0.411 5.411 14 C -0.054 4.054 15 C 0.186 3.814 16 C -0.214 4.214 17 C -0.088 4.088 18 C -0.124 4.124 19 C 0.063 3.937 20 F -0.149 7.149 21 C -0.137 4.137 22 C -0.088 4.088 23 C 0.063 3.937 24 N -0.573 5.573 25 H 0.426 0.574 26 H 0.292 0.708 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.166 0.834 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.302 0.979 -1.639 9.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.345 5.345 2 C -0.204 4.204 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.175 1.175 7 C -0.445 4.445 8 H 0.125 0.875 9 C 0.067 3.933 10 N -0.206 5.206 11 C -0.081 4.081 12 C -0.283 4.283 13 N -0.124 5.124 14 C -0.201 4.201 15 C 0.075 3.925 16 C -0.240 4.240 17 C -0.094 4.094 18 C -0.144 4.144 19 C 0.043 3.957 20 F -0.128 7.128 21 C -0.157 4.157 22 C -0.108 4.108 23 C -0.045 4.045 24 N -0.178 5.178 25 H 0.268 0.732 26 H 0.103 0.897 27 H 0.181 0.819 28 H 0.181 0.819 29 H 0.156 0.844 30 H 0.158 0.842 31 H 0.184 0.816 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.020 1.227 -1.720 9.264 hybrid contribution -0.443 0.455 0.053 0.637 sum 8.576 1.682 -1.668 8.897 Atomic orbital electron populations 1.70114 1.09145 1.30739 1.24496 1.27161 0.95857 1.04870 0.92507 0.85128 0.79192 0.74959 0.80371 1.17459 1.18915 1.17545 1.20124 0.95704 0.89663 1.39034 0.87539 1.20805 0.89509 0.92659 0.90341 1.69566 1.07700 1.26272 1.17042 1.24040 1.01737 0.89833 0.92450 1.23011 0.90158 0.99132 1.16003 1.67698 1.08886 1.29739 1.06042 1.20592 0.90581 0.90232 1.18649 1.18066 0.88012 0.90662 0.95723 1.20684 0.90724 1.03211 1.09363 1.17996 0.93110 0.96821 1.01438 1.20317 0.89553 1.01724 1.02758 1.17122 0.80501 0.96135 1.01968 1.91448 1.46133 1.84892 1.90312 1.20994 0.99474 0.95434 0.99782 1.20190 0.87561 1.01278 1.01751 1.18705 0.85423 0.97908 1.02478 1.42349 1.03705 1.27094 1.44621 0.73230 0.89679 0.81938 0.81860 0.84442 0.84236 0.81647 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -34.49 11.50 21.85 0.25 -34.24 16 2 C 0.02 0.99 5.50 85.32 0.47 1.46 16 3 Si 0.99 32.36 29.56 68.60 2.03 34.39 16 4 H -0.25 -7.72 7.11 99.48 0.71 -7.01 16 5 H -0.26 -8.46 7.11 99.48 0.71 -7.76 16 6 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 7 C -0.42 -19.70 8.33 23.29 0.19 -19.51 16 8 H 0.11 4.59 4.85 -2.91 -0.01 4.57 16 9 C 0.19 9.85 6.71 41.54 0.28 10.13 16 10 N -0.49 -25.24 8.06 -184.04 -1.48 -26.73 16 11 C 0.09 4.02 11.17 84.97 0.95 4.97 16 12 C -0.12 -5.24 11.17 84.92 0.95 -4.30 16 13 N -0.41 -19.70 10.37 -179.06 -1.86 -21.56 16 14 C -0.05 -2.63 6.87 43.39 0.30 -2.33 16 15 C 0.19 8.13 6.37 40.02 0.25 8.39 16 16 C -0.21 -8.73 10.71 22.63 0.24 -8.49 16 17 C -0.09 -3.18 6.16 -21.35 -0.13 -3.31 16 18 C -0.12 -3.83 10.03 22.37 0.22 -3.61 16 19 C 0.06 1.75 7.24 22.10 0.16 1.91 16 20 F -0.15 -4.05 17.25 44.97 0.78 -3.27 16 21 C -0.14 -3.26 10.00 22.38 0.22 -3.03 16 22 C -0.09 -2.24 10.07 22.36 0.23 -2.02 16 23 C 0.06 2.13 7.26 39.04 0.28 2.41 16 24 N -0.57 -21.41 5.02 -176.92 -0.89 -22.30 16 25 H 0.43 14.86 7.04 -92.71 -0.65 14.21 16 26 H 0.29 12.33 8.29 -92.71 -0.77 11.56 16 27 H 0.16 5.97 8.06 -2.91 -0.02 5.95 16 28 H 0.16 5.80 8.06 -2.91 -0.02 5.77 16 29 H 0.14 5.50 8.06 -2.91 -0.02 5.47 16 30 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 31 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -60.04 289.19 3.99 -56.05 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: 0.54 Total: 34.98 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 4.62 Total: -17.32 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -3.98 Total: -104.83 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.78 Total: -3.27 kcal Atomic # 14 Polarization: 32.36 SS G_CDS: 2.03 Total: 34.39 kcal Total: -60.04 3.99 -56.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245573464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.782 kcal (2) G-P(sol) polarization free energy of solvation -60.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds