Wall clock time and date at job start Tue Mar 31 2020 05:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30855 * 1 3 3 Si 1.86796 * 119.99763 * 2 1 4 4 H 1.48499 * 109.47467 * 269.99804 * 3 2 1 5 5 H 1.48503 * 109.47756 * 30.00137 * 3 2 1 6 6 H 1.48506 * 109.47141 * 150.00311 * 3 2 1 7 7 C 1.39959 * 119.99936 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00019 * 164.08364 * 7 2 1 9 9 C 1.40806 * 120.00144 * 344.07323 * 7 2 1 10 10 C 1.40793 * 120.30609 * 333.02857 * 9 7 2 11 11 C 1.36319 * 120.02354 * 180.02562 * 10 9 7 12 12 C 1.39262 * 120.66142 * 359.97438 * 11 10 9 13 13 F 1.35098 * 119.68645 * 180.02562 * 12 11 10 14 14 C 1.38308 * 120.61988 * 359.71958 * 12 11 10 15 15 C 1.39139 * 119.95262 * 0.56162 * 14 12 11 16 16 C 1.47795 * 120.32439 * 179.72299 * 15 14 12 17 17 C 1.41688 * 119.99218 * 129.95539 * 16 15 14 18 18 C 1.35678 * 119.62601 * 180.25778 * 17 16 15 19 19 C 1.41023 * 119.44519 * 359.51806 * 18 17 16 20 20 N 1.32258 * 133.23784 * 180.21172 * 19 18 17 21 21 N 1.28655 * 109.54591 * 180.02562 * 20 19 18 22 22 C 1.30784 * 110.31168 * 359.97438 * 21 20 19 23 23 N 1.36217 * 107.45265 * 0.02562 * 22 21 20 24 24 C 1.36078 * 133.51031 * 179.97438 * 23 22 21 25 25 H 0.97005 * 119.99613 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.98568 * 0.04197 * 10 9 7 27 27 H 1.07991 * 119.66949 * 180.02562 * 11 10 9 28 28 H 1.07997 * 120.02032 * 180.27627 * 14 12 11 29 29 H 1.08003 * 120.18656 * 0.03248 * 17 16 15 30 30 H 1.07998 * 120.27886 * 179.79010 * 18 17 16 31 31 H 1.07991 * 126.27375 * 180.02562 * 22 21 20 32 32 H 1.08000 * 119.83030 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0465 -1.4000 5 1 1.4400 2.6528 0.7000 6 1 3.5401 1.4402 0.7000 7 6 2.0083 -1.2121 -0.0005 8 1 3.0573 -1.2299 -0.2570 9 6 1.3449 -2.4083 0.3335 10 6 0.2209 -2.3844 1.1812 11 6 -0.4167 -3.5460 1.5013 12 6 0.0314 -4.7644 0.9972 13 9 -0.6157 -5.9036 1.3268 14 6 1.1289 -4.8184 0.1573 15 6 1.8027 -3.6491 -0.1815 16 6 2.9801 -3.6980 -1.0735 17 6 3.0578 -2.8318 -2.1921 18 6 4.1396 -2.8867 -3.0090 19 6 5.1767 -3.7994 -2.7258 20 7 6.3268 -4.0760 -3.3172 21 7 6.9333 -5.0051 -2.6659 22 6 6.2209 -5.3749 -1.6333 23 7 5.0830 -4.6261 -1.6328 24 6 3.9959 -4.5744 -0.8159 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1363 -1.4455 1.5777 27 1 -1.2785 -3.5211 2.1516 28 1 1.4655 -5.7680 -0.2316 29 1 2.2585 -2.1344 -2.3954 30 1 4.2081 -2.2337 -3.8665 31 1 6.4862 -6.1346 -0.9131 32 1 3.9355 -5.2301 0.0402 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245659069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:56 Heat of formation + Delta-G solvation = 64.450498 kcal Electronic energy + Delta-G solvation = -20911.722524 eV Core-core repulsion = 17559.439707 eV Total energy + Delta-G solvation = -3352.282817 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.31147 -44.39669 -40.10576 -38.39590 -35.59394 -34.94062 -33.37295 -31.44513 -30.70395 -29.74637 -27.04097 -25.31038 -24.42440 -23.37096 -22.93278 -22.11789 -19.36419 -19.09834 -18.23345 -17.72031 -17.45286 -17.21869 -16.56558 -16.17846 -16.04235 -15.83034 -15.62019 -15.22511 -14.52152 -14.14026 -13.81631 -13.61859 -13.39722 -13.23397 -12.95768 -12.80467 -12.63189 -12.48095 -12.26072 -12.12477 -11.77434 -11.58349 -11.45471 -11.07369 -10.51521 -9.53857 -9.32497 -8.92014 -8.71469 -6.39186 -0.28957 0.11248 0.76473 0.91688 1.43020 1.46477 1.47158 1.53980 1.78726 2.16756 2.43476 2.60664 3.19365 3.47827 3.54024 3.77171 3.89018 3.98396 4.04436 4.14983 4.28251 4.43933 4.67889 4.81364 4.95592 5.01843 5.08466 5.11428 5.22538 5.31559 5.48015 5.52620 5.66849 5.87703 5.97229 6.02018 6.18452 6.51973 6.78595 6.84477 7.52829 8.19169 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.007208 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.680272 B = 3883.698096 C = 5829.100906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.048 3.952 3 Si 0.965 3.035 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.455 4.455 8 H 0.085 0.915 9 C 0.106 3.894 10 C -0.150 4.150 11 C -0.124 4.124 12 C -0.057 4.057 13 F -0.170 7.170 14 C -0.089 4.089 15 C -0.168 4.168 16 C -0.006 4.006 17 C -0.044 4.044 18 C -0.107 4.107 19 C 0.183 3.817 20 N -0.341 5.341 21 N -0.297 5.297 22 C 0.121 3.879 23 N -0.385 5.385 24 C 0.040 3.960 25 H 0.295 0.705 26 H 0.117 0.883 27 H 0.116 0.884 28 H 0.129 0.871 29 H 0.149 0.851 30 H 0.171 0.829 31 H 0.268 0.732 32 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -2.601 0.740 3.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.171 4.171 3 Si 0.786 3.214 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.187 1.187 7 C -0.483 4.483 8 H 0.103 0.897 9 C 0.103 3.897 10 C -0.169 4.169 11 C -0.143 4.143 12 C -0.076 4.076 13 F -0.150 7.150 14 C -0.107 4.107 15 C -0.171 4.171 16 C -0.010 4.010 17 C -0.069 4.069 18 C -0.128 4.128 19 C -0.068 4.068 20 N -0.187 5.187 21 N -0.135 5.135 22 C -0.161 4.161 23 N -0.063 5.063 24 C -0.081 4.081 25 H 0.106 0.894 26 H 0.135 0.865 27 H 0.134 0.866 28 H 0.146 0.854 29 H 0.167 0.833 30 H 0.188 0.812 31 H 0.284 0.716 32 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.895 -2.526 -0.287 4.651 hybrid contribution -1.195 0.524 1.080 1.694 sum 2.700 -2.002 0.793 3.453 Atomic orbital electron populations 1.69814 1.08751 1.31320 1.32790 1.26582 0.95256 1.03960 0.91269 0.85420 0.79260 0.76873 0.79821 1.18451 1.19288 1.18710 1.19694 0.97788 0.91189 1.39601 0.89655 1.17805 0.91072 0.92063 0.88801 1.20903 0.98997 0.96586 1.00440 1.20701 1.00527 0.91822 1.01245 1.17307 0.99339 0.81477 1.09515 1.91306 1.81606 1.49608 1.92442 1.20747 0.94685 0.97985 0.97321 1.18058 1.00171 0.93043 1.05817 1.18249 0.93311 0.94573 0.94818 1.21509 0.97478 0.96332 0.91536 1.20308 0.90679 0.98843 1.02965 1.22682 0.97877 0.97358 0.88836 1.74766 1.04516 1.14278 1.25129 1.73999 1.25465 1.08872 1.05173 1.27258 0.83638 1.02398 1.02853 1.43830 1.15820 1.26567 1.20129 1.22016 0.85191 1.03852 0.97090 0.89419 0.86497 0.86568 0.85362 0.83290 0.81178 0.71645 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -34.83 11.00 21.83 0.24 -34.59 16 2 C 0.05 1.99 5.16 85.26 0.44 2.43 16 3 Si 0.96 32.51 29.59 68.60 2.03 34.54 16 4 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 5 H -0.27 -8.79 7.11 99.48 0.71 -8.09 16 6 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 7 C -0.46 -19.49 7.08 23.32 0.17 -19.32 16 8 H 0.09 3.58 6.64 -2.91 -0.02 3.56 16 9 C 0.11 4.58 5.55 -21.11 -0.12 4.47 16 10 C -0.15 -6.59 8.61 22.45 0.19 -6.40 16 11 C -0.12 -5.08 9.94 22.07 0.22 -4.86 16 12 C -0.06 -2.27 7.30 22.53 0.16 -2.11 16 13 F -0.17 -6.65 17.26 44.97 0.78 -5.88 16 14 C -0.09 -3.28 9.44 22.50 0.21 -3.07 16 15 C -0.17 -6.48 5.51 -19.62 -0.11 -6.59 16 16 C -0.01 -0.21 4.89 -20.28 -0.10 -0.31 16 17 C -0.04 -1.44 8.00 22.53 0.18 -1.26 16 18 C -0.11 -3.31 10.09 22.36 0.23 -3.08 16 19 C 0.18 6.23 7.91 134.12 1.06 7.29 16 20 N -0.34 -12.69 12.30 -55.27 -0.68 -13.37 16 21 N -0.30 -10.13 12.19 -59.40 -0.72 -10.85 16 22 C 0.12 3.23 12.97 179.80 2.33 5.56 16 23 N -0.39 -11.55 2.94 -354.98 -1.04 -12.59 16 24 C 0.04 1.16 10.44 83.65 0.87 2.03 16 25 H 0.29 11.63 8.30 -92.70 -0.77 10.86 16 26 H 0.12 5.34 6.26 -2.91 -0.02 5.32 16 27 H 0.12 4.32 8.06 -2.92 -0.02 4.30 16 28 H 0.13 4.06 8.03 -2.91 -0.02 4.04 16 29 H 0.15 5.06 7.32 -2.91 -0.02 5.04 16 30 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.27 3.97 8.06 -2.92 -0.02 3.95 16 32 H 0.19 4.37 8.00 -2.91 -0.02 4.35 16 Total: -1.00 -53.91 288.20 7.52 -46.39 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.18 Total: 21.57 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: 5.74 Total: -25.22 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -2.21 Total: -71.41 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.78 Total: -5.88 kcal Atomic # 14 Polarization: 32.51 SS G_CDS: 2.03 Total: 34.54 kcal Total: -53.91 7.52 -46.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245659069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.841 kcal (2) G-P(sol) polarization free energy of solvation -53.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds