Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34715 * 117.00350 * 2 1 4 4 O 1.21477 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.47648 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.39787 * 120.16096 * 261.38062 * 5 3 2 7 7 Cl 1.73606 * 120.09243 * 359.74651 * 6 5 3 8 8 C 1.38104 * 119.80972 * 179.72412 * 6 5 3 9 9 C 1.38311 * 120.13373 * 0.02562 * 8 6 5 10 10 C 1.38386 * 120.33222 * 359.97438 * 9 8 6 11 11 C 1.37919 * 120.18729 * 359.96114 * 10 9 8 12 12 C 1.50700 * 120.07094 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47371 * 262.98002 * 12 11 10 14 14 C 1.46502 * 119.99873 * 263.75132 * 13 12 11 15 15 C 1.36936 * 119.99895 * 83.74948 * 13 12 11 16 16 H 1.07999 * 119.99881 * 20.99561 * 15 13 12 17 17 C 1.38807 * 120.00012 * 200.99319 * 15 13 12 18 18 N 1.31613 * 120.00116 * 14.57140 * 17 15 13 19 19 Si 1.86807 * 120.00026 * 194.57590 * 17 15 13 20 20 H 1.48500 * 109.47311 * 94.97559 * 19 17 15 21 21 H 1.48497 * 109.47084 * 214.97599 * 19 17 15 22 22 H 1.48502 * 109.46770 * 334.97475 * 19 17 15 23 23 H 1.09004 * 109.47144 * 300.00200 * 1 2 3 24 24 H 1.08999 * 109.47119 * 60.00447 * 1 2 3 25 25 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.92834 * 179.97438 * 8 6 5 27 27 H 1.08006 * 119.83392 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.90931 * 179.97438 * 10 9 8 29 29 H 1.09001 * 109.47186 * 22.98289 * 12 11 10 30 30 H 1.09000 * 109.47225 * 142.98020 * 12 11 10 31 31 H 1.09000 * 109.46557 * 94.70600 * 14 13 12 32 32 H 1.09002 * 109.47171 * 214.70040 * 14 13 12 33 33 H 1.08997 * 109.47250 * 334.70886 * 14 13 12 34 34 H 0.97000 * 120.00059 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5381 1.2775 0.0006 6 6 4.2295 1.4954 1.1958 7 17 3.3566 1.6828 2.6847 8 6 5.6090 1.5606 1.1888 9 6 6.3052 1.4115 0.0030 10 6 5.6265 1.1956 -1.1835 11 6 4.2490 1.1267 -1.1919 12 6 3.5126 0.8909 -2.4854 13 7 3.0605 2.1732 -3.0307 14 6 1.6950 2.6377 -2.7742 15 6 3.9143 2.9377 -3.7803 16 1 4.7715 2.4828 -4.2543 17 6 3.6781 4.2972 -3.9308 18 7 2.8209 4.9077 -3.1404 19 14 4.5766 5.2603 -5.2555 20 1 3.7288 5.3383 -6.4721 21 1 4.8624 6.6316 -4.7626 22 1 5.8531 4.5766 -5.5846 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 6.1451 1.7293 2.1111 27 1 7.3840 1.4638 0.0031 28 1 6.1769 1.0805 -2.1055 29 1 4.1787 0.4068 -3.1996 30 1 2.6503 0.2502 -2.3010 31 1 1.6926 3.2970 -1.9061 32 1 1.3266 3.1813 -3.6442 33 1 1.0499 1.7806 -2.5812 34 1 2.6555 5.8576 -3.2459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001249648069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -36.512100 kcal Electronic energy + Delta-G solvation = -20760.326108 eV Core-core repulsion = 17492.399928 eV Total energy + Delta-G solvation = -3267.926180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.25147 -38.56783 -36.41231 -35.92328 -35.44385 -32.18989 -30.94162 -30.19583 -27.51388 -26.22335 -25.72986 -23.60189 -22.17594 -20.93496 -20.14069 -17.66150 -16.84046 -16.59717 -16.18905 -15.90987 -14.85230 -14.84295 -14.44792 -13.79166 -13.55907 -13.30934 -13.12904 -12.93937 -12.68168 -12.17685 -11.88245 -11.64316 -11.29952 -11.20405 -11.01617 -10.88920 -10.73234 -10.69837 -10.49466 -10.26652 -10.02975 -9.96001 -9.93313 -8.60262 -8.56322 -8.34839 -6.86724 -5.77951 -3.22068 1.30281 1.56964 2.26314 2.61617 3.06815 3.34952 3.40684 3.43115 3.89318 4.45545 5.03002 5.08031 5.25238 5.32454 5.40565 5.43700 5.54429 5.59544 5.66596 5.68373 5.78931 6.11530 6.18307 6.32945 6.45399 6.62514 6.66250 6.73618 6.94891 7.09008 7.36271 7.72515 7.88369 8.17367 8.31306 9.13702 9.75866 10.24157 11.24922 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.006999 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.640336 B = 3999.462502 C = 4708.464350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.357 6.357 3 C 0.516 3.484 4 O -0.466 6.466 5 C -0.093 4.093 6 C 0.000 4.000 7 Cl -0.075 7.075 8 C -0.134 4.134 9 C -0.089 4.089 10 C -0.103 4.103 11 C -0.030 4.030 12 C 0.169 3.831 13 N -0.583 5.583 14 C 0.157 3.843 15 C -0.261 4.261 16 H 0.073 0.927 17 C 0.006 3.994 18 N -0.891 5.891 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.278 1.278 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.098 0.902 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.044 0.956 33 H -0.009 1.009 34 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 -10.595 7.764 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.357 3.643 4 O -0.350 6.350 5 C -0.096 4.096 6 C -0.027 4.027 7 Cl -0.046 7.046 8 C -0.153 4.153 9 C -0.108 4.108 10 C -0.122 4.122 11 C -0.036 4.036 12 C 0.042 3.958 13 N -0.303 5.303 14 C 0.013 3.987 15 C -0.390 4.390 16 H 0.091 0.909 17 C -0.194 4.194 18 N -0.534 5.534 19 Si 0.736 3.264 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.203 1.203 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.150 0.850 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.009 0.991 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.252 -10.042 7.833 12.797 hybrid contribution 0.238 1.008 -0.352 1.094 sum 1.489 -9.034 7.480 11.823 Atomic orbital electron populations 1.23227 0.76833 1.03195 1.02630 1.86630 1.22940 1.33160 1.84713 1.20961 0.88793 0.81725 0.72870 1.90902 1.65951 1.35676 1.42467 1.18661 0.89463 1.08086 0.93349 1.20735 0.92407 1.03874 0.85637 1.98352 1.76735 1.95950 1.33521 1.20732 0.91073 1.04153 0.99378 1.21193 0.99940 0.97720 0.91935 1.21023 0.93420 0.99649 0.98152 1.21355 0.94112 0.93335 0.94788 1.20195 0.96325 0.90270 0.89054 1.44298 1.09884 1.19781 1.56294 1.21073 0.82039 0.94188 1.01423 1.19241 1.08267 0.89513 1.22018 0.90889 1.25102 0.99147 0.96439 0.98721 1.70128 1.36988 1.09522 1.36733 0.86214 0.79290 0.79462 0.81425 1.21380 1.21690 1.20278 0.92160 0.91701 0.88403 0.85013 0.85224 0.84972 0.91948 0.92687 0.92982 0.93703 0.99052 0.93480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.56 101.05 1.07 1.54 16 2 O -0.36 -6.19 10.32 -40.53 -0.42 -6.61 16 3 C 0.52 10.48 4.23 34.57 0.15 10.62 16 4 O -0.47 -10.79 14.24 -19.25 -0.27 -11.06 16 5 C -0.09 -1.85 5.76 -104.95 -0.60 -2.46 16 6 C 0.00 0.01 6.35 -39.05 -0.25 -0.24 16 7 Cl -0.07 -1.22 28.04 -51.86 -1.45 -2.67 16 8 C -0.13 -2.04 9.82 -39.60 -0.39 -2.43 16 9 C -0.09 -1.32 10.04 -39.50 -0.40 -1.71 16 10 C -0.10 -1.77 9.66 -39.64 -0.38 -2.15 16 11 C -0.03 -0.60 5.45 -104.21 -0.57 -1.17 16 12 C 0.17 3.50 5.38 -5.19 -0.03 3.47 16 13 N -0.58 -14.74 2.92 -182.50 -0.53 -15.28 16 14 C 0.16 4.07 7.34 59.85 0.44 4.51 16 15 C -0.26 -7.04 9.65 -15.06 -0.15 -7.18 16 16 H 0.07 1.88 7.87 -52.49 -0.41 1.46 16 17 C 0.01 0.17 5.07 -17.44 -0.09 0.08 16 18 N -0.89 -26.45 10.68 55.49 0.59 -25.86 16 19 Si 0.91 21.68 29.58 -169.99 -5.03 16.65 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 27 H 0.13 1.45 8.06 -52.48 -0.42 1.03 16 28 H 0.13 2.05 8.05 -52.49 -0.42 1.62 16 29 H 0.06 1.17 7.98 -51.93 -0.41 0.76 16 30 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 31 H 0.05 1.51 5.76 -51.93 -0.30 1.21 16 32 H 0.04 1.23 7.22 -51.93 -0.37 0.86 16 33 H -0.01 -0.21 7.57 -51.93 -0.39 -0.61 16 34 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 306.52 15.07 4.62 4.62 Total: -1.00 -32.20 306.52 -7.61 -39.81 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.92 Total: -2.48 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -1.20 Total: 2.88 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.06 Total: -41.14 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.69 Total: -17.67 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.45 Total: -2.67 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.20 -7.61 -39.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249648069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.301 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds