Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34715 * 117.00350 * 2 1 4 4 O 1.21477 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.47648 * 120.00126 * 179.97438 * 3 2 1 6 6 C 1.39787 * 120.16096 * 261.38062 * 5 3 2 7 7 Cl 1.73606 * 120.09243 * 359.74651 * 6 5 3 8 8 C 1.38104 * 119.80972 * 179.72412 * 6 5 3 9 9 C 1.38311 * 120.13373 * 0.02562 * 8 6 5 10 10 C 1.38386 * 120.33222 * 359.97438 * 9 8 6 11 11 C 1.37919 * 120.18729 * 359.96114 * 10 9 8 12 12 C 1.50700 * 120.07094 * 180.02562 * 11 10 9 13 13 N 1.46500 * 109.47371 * 262.98002 * 12 11 10 14 14 C 1.46502 * 119.99873 * 263.75132 * 13 12 11 15 15 C 1.36936 * 119.99895 * 83.74948 * 13 12 11 16 16 H 1.07999 * 119.99881 * 20.99561 * 15 13 12 17 17 C 1.38807 * 120.00012 * 200.99319 * 15 13 12 18 18 N 1.31613 * 120.00116 * 14.57140 * 17 15 13 19 19 Si 1.86807 * 120.00026 * 194.57590 * 17 15 13 20 20 H 1.48500 * 109.47311 * 94.97559 * 19 17 15 21 21 H 1.48497 * 109.47084 * 214.97599 * 19 17 15 22 22 H 1.48502 * 109.46770 * 334.97475 * 19 17 15 23 23 H 1.09004 * 109.47144 * 300.00200 * 1 2 3 24 24 H 1.08999 * 109.47119 * 60.00447 * 1 2 3 25 25 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.08003 * 119.92834 * 179.97438 * 8 6 5 27 27 H 1.08006 * 119.83392 * 179.97438 * 9 8 6 28 28 H 1.07997 * 119.90931 * 179.97438 * 10 9 8 29 29 H 1.09001 * 109.47186 * 22.98289 * 12 11 10 30 30 H 1.09000 * 109.47225 * 142.98020 * 12 11 10 31 31 H 1.09000 * 109.46557 * 94.70600 * 14 13 12 32 32 H 1.09002 * 109.47171 * 214.70040 * 14 13 12 33 33 H 1.08997 * 109.47250 * 334.70886 * 14 13 12 34 34 H 0.97000 * 120.00059 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5381 1.2775 0.0006 6 6 4.2295 1.4954 1.1958 7 17 3.3566 1.6828 2.6847 8 6 5.6090 1.5606 1.1888 9 6 6.3052 1.4115 0.0030 10 6 5.6265 1.1956 -1.1835 11 6 4.2490 1.1267 -1.1919 12 6 3.5126 0.8909 -2.4854 13 7 3.0605 2.1732 -3.0307 14 6 1.6950 2.6377 -2.7742 15 6 3.9143 2.9377 -3.7803 16 1 4.7715 2.4828 -4.2543 17 6 3.6781 4.2972 -3.9308 18 7 2.8209 4.9077 -3.1404 19 14 4.5766 5.2603 -5.2555 20 1 3.7288 5.3383 -6.4721 21 1 4.8624 6.6316 -4.7626 22 1 5.8531 4.5766 -5.5846 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 6.1451 1.7293 2.1111 27 1 7.3840 1.4638 0.0031 28 1 6.1769 1.0805 -2.1055 29 1 4.1787 0.4068 -3.1996 30 1 2.6503 0.2502 -2.3010 31 1 1.6926 3.2970 -1.9061 32 1 1.3266 3.1813 -3.6442 33 1 1.0499 1.7806 -2.5812 34 1 2.6555 5.8576 -3.2459 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001249648069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -55.184133 kcal Electronic energy + Delta-G solvation = -20761.135788 eV Core-core repulsion = 17492.399928 eV Total energy + Delta-G solvation = -3268.735860 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.72202 -39.94380 -37.84136 -37.42288 -37.16865 -33.91688 -32.40341 -31.82730 -28.72974 -28.08836 -27.55029 -24.98057 -23.86985 -22.48775 -21.63338 -19.11072 -18.71568 -18.09728 -17.66308 -17.29039 -16.69813 -16.21179 -15.73505 -15.57618 -15.27853 -14.87590 -14.61822 -14.35159 -14.14134 -13.74214 -13.25480 -13.13799 -12.96268 -12.86536 -12.62158 -12.43251 -12.36015 -12.25628 -12.15055 -11.95108 -11.85698 -11.74819 -11.48649 -10.65423 -9.92718 -9.70323 -8.87794 -7.82672 -5.31730 -0.04191 0.24282 0.93842 1.08858 1.46934 1.48744 1.57777 1.73067 2.46791 2.60357 3.31590 3.70746 3.77223 3.80138 3.99498 4.25882 4.28955 4.29663 4.32629 4.42858 4.59320 4.65033 4.72806 4.86910 4.88890 5.07805 5.21047 5.24424 5.34134 5.55109 5.63553 5.77733 5.82147 6.26848 6.67396 7.08773 7.78986 8.24909 9.20568 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.006999 C = 0.005945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.640336 B = 3999.462502 C = 4708.464350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.518 3.482 4 O -0.506 6.506 5 C -0.121 4.121 6 C -0.019 4.019 7 Cl -0.068 7.068 8 C -0.121 4.121 9 C -0.077 4.077 10 C -0.108 4.108 11 C -0.054 4.054 12 C 0.170 3.830 13 N -0.602 5.602 14 C 0.183 3.817 15 C -0.260 4.260 16 H 0.087 0.913 17 C -0.054 4.054 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.257 1.257 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.142 0.858 26 H 0.167 0.833 27 H 0.176 0.824 28 H 0.149 0.851 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.007 0.993 34 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 -12.168 8.238 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.361 3.639 4 O -0.393 6.393 5 C -0.124 4.124 6 C -0.046 4.046 7 Cl -0.039 7.039 8 C -0.140 4.140 9 C -0.095 4.095 10 C -0.127 4.127 11 C -0.058 4.058 12 C 0.044 3.956 13 N -0.323 5.323 14 C 0.038 3.962 15 C -0.390 4.390 16 H 0.104 0.896 17 C -0.249 4.249 18 N -0.581 5.581 19 Si 0.799 3.201 20 H -0.217 1.217 21 H -0.228 1.228 22 H -0.181 1.181 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.160 0.840 26 H 0.185 0.815 27 H 0.193 0.807 28 H 0.167 0.833 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.025 0.975 34 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.742 -11.698 8.327 14.839 hybrid contribution -0.504 1.269 -0.348 1.409 sum 3.238 -10.429 7.980 13.525 Atomic orbital electron populations 1.23590 0.74717 1.05964 1.02296 1.86617 1.25023 1.31719 1.84011 1.21197 0.89234 0.81799 0.71680 1.90885 1.66881 1.37020 1.44555 1.18938 0.89414 1.09408 0.94603 1.21018 0.93614 1.04463 0.85464 1.98349 1.76919 1.95934 1.32745 1.21262 0.90042 1.01478 1.01200 1.21699 1.02126 0.95136 0.90490 1.21356 0.92442 0.98892 1.00036 1.21225 0.95447 0.94963 0.94126 1.20246 0.97082 0.88085 0.90225 1.44311 1.09510 1.20463 1.57996 1.20604 0.83392 0.93732 0.98477 1.19621 1.07895 0.89619 1.21861 0.89559 1.25879 1.00505 0.97640 1.00905 1.70332 1.39692 1.09067 1.39057 0.85194 0.78822 0.77541 0.78564 1.21675 1.22794 1.18137 0.91870 0.92768 0.84027 0.81547 0.80655 0.83302 0.89895 0.92428 0.96430 0.96625 0.97465 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.26 10.32 -56.24 -0.58 -12.84 16 3 C 0.52 21.27 4.23 70.31 0.30 21.57 16 4 O -0.51 -24.28 14.24 19.91 0.28 -24.00 16 5 C -0.12 -4.76 5.76 -20.08 -0.12 -4.88 16 6 C -0.02 -0.64 6.35 22.61 0.14 -0.49 16 7 Cl -0.07 -2.17 28.04 -2.72 -0.08 -2.24 16 8 C -0.12 -3.24 9.82 22.26 0.22 -3.03 16 9 C -0.08 -1.92 10.04 22.32 0.22 -1.69 16 10 C -0.11 -3.38 9.66 22.23 0.21 -3.16 16 11 C -0.05 -2.05 5.45 -19.60 -0.11 -2.16 16 12 C 0.17 6.89 5.38 85.63 0.46 7.36 16 13 N -0.60 -30.65 2.92 -731.31 -2.14 -32.78 16 14 C 0.18 9.87 7.34 127.77 0.94 10.81 16 15 C -0.26 -13.97 9.65 84.03 0.81 -13.16 16 16 H 0.09 4.29 7.87 -2.91 -0.02 4.27 16 17 C -0.05 -3.04 5.07 84.86 0.43 -2.61 16 18 N -0.94 -57.65 10.68 21.65 0.23 -57.42 16 19 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 20 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 23 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 24 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.17 3.28 8.06 -2.91 -0.02 3.25 16 27 H 0.18 2.81 8.06 -2.91 -0.02 2.78 16 28 H 0.15 4.07 8.05 -2.91 -0.02 4.05 16 29 H 0.08 2.97 7.98 -2.39 -0.02 2.95 16 30 H 0.06 2.25 6.79 -2.39 -0.02 2.23 16 31 H 0.02 1.07 5.76 -2.39 -0.01 1.06 16 32 H 0.01 0.88 7.22 -2.39 -0.02 0.86 16 33 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 34 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -72.55 306.52 5.58 -66.97 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.11 Total: 4.85 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 4.71 Total: 10.46 kcal Atomic # 7 Polarization: -88.29 SS G_CDS: -1.91 Total: -90.20 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.30 Total: -36.83 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.24 kcal Total: -72.55 5.58 -66.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001249648069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.790 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds