Wall clock time and date at job start Tue Mar 31 2020 06:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38220 * 120.37405 * 2 1 4 4 N 1.31886 * 120.93197 * 179.97438 * 3 2 1 5 5 C 1.31890 * 121.77971 * 0.02562 * 4 3 2 6 6 Cl 1.73605 * 119.68539 * 179.97438 * 5 4 3 7 7 C 1.38997 * 120.63711 * 0.02562 * 5 4 3 8 8 N 1.40025 * 120.49150 * 179.97438 * 7 5 4 9 9 C 1.34779 * 120.00082 * 204.17734 * 8 7 5 10 10 O 1.21588 * 119.99825 * 5.71404 * 9 8 7 11 11 N 1.34777 * 120.00126 * 185.70913 * 9 8 7 12 12 C 1.46506 * 119.99749 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47460 * 34.99912 * 12 11 9 14 14 C 1.52993 * 109.46927 * 274.99582 * 12 11 9 15 15 C 1.50703 * 109.46830 * 154.99814 * 12 11 9 16 16 H 1.07996 * 120.00186 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99512 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00689 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99509 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46997 * 90.00486 * 19 17 15 21 21 H 1.48501 * 109.47120 * 210.00055 * 19 17 15 22 22 H 1.48492 * 109.47529 * 330.00216 * 19 17 15 23 23 C 1.38571 * 120.36895 * 179.72610 * 2 1 3 24 24 H 1.09003 * 109.47587 * 89.99401 * 1 2 3 25 25 H 1.09001 * 109.47302 * 209.99912 * 1 2 3 26 26 H 1.09008 * 109.47245 * 329.99694 * 1 2 3 27 27 H 1.07999 * 119.53077 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00560 * 24.18539 * 8 7 5 29 29 H 0.96994 * 119.99813 * 359.97438 * 11 9 8 30 30 H 1.08997 * 109.47252 * 179.97438 * 14 12 11 31 31 H 1.09004 * 109.47752 * 300.00510 * 14 12 11 32 32 H 1.09004 * 109.47113 * 60.00818 * 14 12 11 33 33 H 0.96994 * 120.00465 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.80941 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2058 1.1925 0.0000 4 7 3.5246 1.2053 0.0005 5 6 4.2301 0.0910 0.0005 6 17 5.9643 0.1713 0.0005 7 6 3.5985 -1.1472 -0.0005 8 7 4.3505 -2.3284 -0.0010 9 6 3.8144 -3.4684 -0.4800 10 8 2.7184 -3.4506 -1.0062 11 7 4.4931 -4.6281 -0.3758 12 6 3.9105 -5.8672 -0.8970 13 1 3.3361 -5.6482 -1.7971 14 6 2.9894 -6.4813 0.1590 15 6 5.0128 -6.8398 -1.2289 16 1 6.0441 -6.5629 -1.0673 17 6 4.7046 -8.0835 -1.7378 18 7 3.4487 -8.4211 -1.9341 19 14 6.0710 -9.2889 -2.1498 20 1 6.3696 -10.1245 -0.9591 21 1 5.6398 -10.1615 -3.2713 22 1 7.2897 -8.5390 -2.5465 23 6 2.2075 -1.1956 0.0057 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6642 2.1269 0.0004 28 1 5.2573 -2.3263 0.3434 29 1 5.3676 -4.6422 0.0436 30 1 2.5556 -7.4029 -0.2289 31 1 3.5638 -6.7003 1.0592 32 1 2.1921 -5.7778 0.3990 33 1 3.2319 -9.2959 -2.2925 34 1 1.6868 -2.1417 0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320644641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:35 Heat of formation + Delta-G solvation = -5.965929 kcal Electronic energy + Delta-G solvation = -19574.883692 eV Core-core repulsion = 16340.574845 eV Total energy + Delta-G solvation = -3234.308847 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.83761 -39.24363 -36.75525 -35.54567 -34.50776 -33.54013 -32.57280 -30.40737 -28.45972 -27.29871 -25.33018 -24.11753 -22.39288 -21.19065 -20.04055 -18.56440 -17.52291 -17.18343 -16.39335 -15.90244 -15.13807 -14.99291 -14.41860 -14.22243 -14.03821 -13.46259 -13.24768 -13.13653 -12.82619 -12.49084 -12.07293 -11.87065 -11.59263 -11.38323 -11.23977 -11.10971 -10.90637 -10.74643 -10.38625 -10.29832 -10.00660 -9.50096 -9.14693 -9.12281 -8.64215 -8.30089 -7.91997 -6.19088 -4.28598 0.85490 1.19848 1.76868 2.87688 3.20804 3.28259 3.30588 3.40951 3.80377 4.26361 4.48210 4.56766 4.70815 4.97251 5.00065 5.02621 5.14046 5.49893 5.56151 5.80176 5.90169 6.16164 6.29749 6.67528 6.73093 6.87261 6.95513 7.08911 7.31151 7.54137 7.65804 7.70936 7.87186 8.06524 8.58723 8.72156 9.03729 9.39161 10.86982 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.004120 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733465 B = 6794.714792 C = 7768.201399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.109 4.109 3 C 0.079 3.921 4 N -0.453 5.453 5 C 0.120 3.880 6 Cl -0.037 7.037 7 C 0.166 3.834 8 N -0.684 5.684 9 C 0.694 3.306 10 O -0.578 6.578 11 N -0.713 5.713 12 C 0.279 3.721 13 H 0.051 0.949 14 C -0.148 4.148 15 C -0.536 4.536 16 H 0.062 0.938 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.084 4.084 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.408 0.592 29 H 0.388 0.612 30 H 0.092 0.908 31 H 0.027 0.973 32 H 0.015 0.985 33 H 0.265 0.735 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 15.261 5.986 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.112 4.112 3 C -0.080 4.080 4 N -0.163 5.163 5 C -0.048 4.048 6 Cl -0.009 7.009 7 C 0.064 3.936 8 N -0.331 5.331 9 C 0.394 3.606 10 O -0.456 6.456 11 N -0.363 5.363 12 C 0.178 3.822 13 H 0.069 0.931 14 C -0.207 4.207 15 C -0.574 4.574 16 H 0.080 0.920 17 C -0.136 4.136 18 N -0.520 5.520 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.113 4.113 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.179 0.821 28 H 0.244 0.756 29 H 0.221 0.779 30 H 0.110 0.890 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -1.743 15.718 5.414 16.715 hybrid contribution 1.468 -1.439 0.114 2.059 sum -0.275 14.279 5.528 15.314 Atomic orbital electron populations 1.20729 0.89545 1.03263 1.03067 1.20960 0.98076 0.93183 0.98933 1.22383 0.87920 0.97904 0.99836 1.66867 1.08696 1.28850 1.11848 1.21193 0.87224 0.88656 1.07682 1.98381 1.07224 1.98399 1.96868 1.18118 0.91684 0.84896 0.98912 1.42931 1.17943 1.06873 1.65376 1.16140 0.84857 0.80183 0.79417 1.90839 1.20402 1.85098 1.49302 1.45932 1.21379 1.07100 1.61890 1.18755 0.92985 0.77477 0.93015 0.93094 1.22108 0.98039 1.02120 0.98396 1.21189 0.92596 0.99162 1.44489 0.91990 1.24868 0.95833 0.97908 0.94974 1.69890 1.16768 1.21456 1.43869 0.86422 0.81696 0.80721 0.78113 1.20506 1.21011 1.19831 1.21934 0.91336 1.00586 0.97425 0.90403 0.90852 0.91035 0.82072 0.75589 0.77906 0.88961 0.95396 0.96587 0.92469 0.81207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.04 36.00 0.36 -0.59 16 2 C -0.11 -1.31 5.89 -104.51 -0.62 -1.92 16 3 C 0.08 0.92 10.85 -17.53 -0.19 0.73 16 4 N -0.45 -6.35 10.33 -10.21 -0.11 -6.45 16 5 C 0.12 1.74 7.29 -17.25 -0.13 1.61 16 6 Cl -0.04 -0.47 27.94 -51.86 -1.45 -1.92 16 7 C 0.17 2.55 6.45 -83.48 -0.54 2.01 16 8 N -0.68 -10.60 5.21 -14.09 -0.07 -10.67 16 9 C 0.69 13.46 8.35 -86.92 -0.73 12.74 16 10 O -0.58 -13.03 13.21 5.29 0.07 -12.96 16 11 N -0.71 -14.22 5.07 -59.81 -0.30 -14.52 16 12 C 0.28 6.84 2.56 -69.08 -0.18 6.66 16 13 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 14 C -0.15 -3.53 9.26 37.15 0.34 -3.19 16 15 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 18 N -0.88 -24.21 11.32 55.43 0.63 -23.58 16 19 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 C -0.08 -1.27 8.50 -39.11 -0.33 -1.60 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 26 H 0.07 0.46 8.09 -51.92 -0.42 0.04 16 27 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.41 5.25 7.78 -40.82 -0.32 4.94 16 29 H 0.39 6.63 8.56 -40.82 -0.35 6.28 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.17 2.86 5.89 -52.49 -0.31 2.55 16 LS Contribution 307.77 15.07 4.64 4.64 Total: -1.00 -29.73 307.77 -7.77 -37.50 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -3.76 Total: 8.73 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -2.40 Total: 4.06 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.14 Total: -55.22 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.07 Total: -12.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.45 Total: -1.92 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.73 -7.77 -37.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320644641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.533 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds