Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38220 * 120.37405 * 2 1 4 4 N 1.31886 * 120.93197 * 179.97438 * 3 2 1 5 5 C 1.31890 * 121.77971 * 0.02562 * 4 3 2 6 6 Cl 1.73605 * 119.68539 * 179.97438 * 5 4 3 7 7 C 1.38997 * 120.63711 * 0.02562 * 5 4 3 8 8 N 1.40025 * 120.49150 * 179.97438 * 7 5 4 9 9 C 1.34779 * 120.00082 * 204.17734 * 8 7 5 10 10 O 1.21588 * 119.99825 * 5.71404 * 9 8 7 11 11 N 1.34777 * 120.00126 * 185.70913 * 9 8 7 12 12 C 1.46506 * 119.99749 * 180.02562 * 11 9 8 13 13 H 1.08999 * 109.47460 * 34.99912 * 12 11 9 14 14 C 1.52993 * 109.46927 * 274.99582 * 12 11 9 15 15 C 1.50703 * 109.46830 * 154.99814 * 12 11 9 16 16 H 1.07996 * 120.00186 * 0.02562 * 15 12 11 17 17 C 1.37873 * 119.99512 * 179.97438 * 15 12 11 18 18 N 1.31514 * 120.00689 * 0.02562 * 17 15 12 19 19 Si 1.86807 * 119.99509 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.46997 * 90.00486 * 19 17 15 21 21 H 1.48501 * 109.47120 * 210.00055 * 19 17 15 22 22 H 1.48492 * 109.47529 * 330.00216 * 19 17 15 23 23 C 1.38571 * 120.36895 * 179.72610 * 2 1 3 24 24 H 1.09003 * 109.47587 * 89.99401 * 1 2 3 25 25 H 1.09001 * 109.47302 * 209.99912 * 1 2 3 26 26 H 1.09008 * 109.47245 * 329.99694 * 1 2 3 27 27 H 1.07999 * 119.53077 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00560 * 24.18539 * 8 7 5 29 29 H 0.96994 * 119.99813 * 359.97438 * 11 9 8 30 30 H 1.08997 * 109.47252 * 179.97438 * 14 12 11 31 31 H 1.09004 * 109.47752 * 300.00510 * 14 12 11 32 32 H 1.09004 * 109.47113 * 60.00818 * 14 12 11 33 33 H 0.96994 * 120.00465 * 179.97438 * 18 17 15 34 34 H 1.07997 * 120.80941 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2058 1.1925 0.0000 4 7 3.5246 1.2053 0.0005 5 6 4.2301 0.0910 0.0005 6 17 5.9643 0.1713 0.0005 7 6 3.5985 -1.1472 -0.0005 8 7 4.3505 -2.3284 -0.0010 9 6 3.8144 -3.4684 -0.4800 10 8 2.7184 -3.4506 -1.0062 11 7 4.4931 -4.6281 -0.3758 12 6 3.9105 -5.8672 -0.8970 13 1 3.3361 -5.6482 -1.7971 14 6 2.9894 -6.4813 0.1590 15 6 5.0128 -6.8398 -1.2289 16 1 6.0441 -6.5629 -1.0673 17 6 4.7046 -8.0835 -1.7378 18 7 3.4487 -8.4211 -1.9341 19 14 6.0710 -9.2889 -2.1498 20 1 6.3696 -10.1245 -0.9591 21 1 5.6398 -10.1615 -3.2713 22 1 7.2897 -8.5390 -2.5465 23 6 2.2075 -1.1956 0.0057 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 1.6642 2.1269 0.0004 28 1 5.2573 -2.3263 0.3434 29 1 5.3676 -4.6422 0.0436 30 1 2.5556 -7.4029 -0.2289 31 1 3.5638 -6.7003 1.0592 32 1 2.1921 -5.7778 0.3990 33 1 3.2319 -9.2959 -2.2925 34 1 1.6868 -2.1417 0.0107 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320644641.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -25.835112 kcal Electronic energy + Delta-G solvation = -19575.745284 eV Core-core repulsion = 16340.574845 eV Total energy + Delta-G solvation = -3235.170440 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.07105 -40.61166 -37.80172 -37.17570 -36.04888 -34.56754 -34.36225 -31.83999 -30.09376 -28.18551 -27.33919 -25.31914 -23.66367 -22.64317 -21.70846 -20.06994 -18.87188 -18.29946 -17.84879 -17.42180 -16.86321 -16.45376 -15.84220 -15.65748 -15.13017 -14.99496 -14.42865 -14.30991 -14.03908 -13.76383 -13.67071 -13.06547 -12.93836 -12.83439 -12.71313 -12.57566 -12.40120 -12.32047 -12.18866 -12.11710 -11.43830 -11.11567 -10.73256 -10.59359 -10.27101 -9.90337 -9.22292 -8.18312 -6.35237 -0.19914 0.09447 0.70931 1.44109 1.46035 1.51376 1.58349 2.01752 2.41177 2.61713 3.12457 3.22513 3.47750 3.63963 3.93236 3.99472 4.09686 4.61867 4.74263 4.82968 4.84400 4.93254 5.03870 5.08030 5.18793 5.30834 5.35866 5.56642 5.59157 5.61407 5.79085 6.06403 6.10711 6.62610 6.71230 7.05663 7.31901 7.52260 8.88043 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.004120 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733465 B = 6794.714792 C = 7768.201399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.101 4.101 3 C 0.089 3.911 4 N -0.466 5.466 5 C 0.115 3.885 6 Cl -0.026 7.026 7 C 0.142 3.858 8 N -0.669 5.669 9 C 0.696 3.304 10 O -0.613 6.613 11 N -0.709 5.709 12 C 0.288 3.712 13 H 0.004 0.996 14 C -0.134 4.134 15 C -0.548 4.548 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.915 5.915 19 Si 0.971 3.029 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.104 4.104 24 H 0.084 0.916 25 H 0.068 0.932 26 H 0.103 0.897 27 H 0.204 0.796 28 H 0.420 0.580 29 H 0.404 0.596 30 H 0.068 0.932 31 H 0.040 0.960 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 16.764 6.591 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.104 4.104 3 C -0.070 4.070 4 N -0.176 5.176 5 C -0.052 4.052 6 Cl 0.002 6.998 7 C 0.042 3.958 8 N -0.317 5.317 9 C 0.397 3.603 10 O -0.493 6.493 11 N -0.361 5.361 12 C 0.185 3.815 13 H 0.022 0.978 14 C -0.193 4.193 15 C -0.586 4.586 16 H 0.091 0.909 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.796 3.204 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.133 4.133 24 H 0.103 0.897 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.220 0.780 28 H 0.259 0.741 29 H 0.239 0.761 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.023 17.273 6.054 18.331 hybrid contribution 1.167 -1.762 -0.066 2.115 sum 0.144 15.511 5.988 16.627 Atomic orbital electron populations 1.20834 0.87093 1.04690 1.03875 1.21308 0.99783 0.92174 0.97104 1.23094 0.87307 0.99262 0.97295 1.66992 1.09809 1.28421 1.12349 1.21235 0.87923 0.88398 1.07653 1.98379 1.06250 1.98372 1.96813 1.18253 0.91961 0.84892 1.00743 1.42556 1.18403 1.05918 1.64841 1.16147 0.84298 0.80792 0.79082 1.90823 1.21992 1.85786 1.50733 1.45526 1.22077 1.06281 1.62233 1.18328 0.92664 0.78972 0.91569 0.97784 1.21919 0.97989 1.00901 0.98488 1.21517 0.93259 0.99473 1.44385 0.90865 1.25735 0.97984 0.99741 0.94791 1.70034 1.18767 1.21912 1.44609 0.85356 0.78882 0.78322 0.77835 1.19656 1.21258 1.18998 1.21909 0.91576 1.00968 0.98805 0.89718 0.91306 0.87785 0.77966 0.74131 0.76070 0.91293 0.94132 0.96561 0.92474 0.83565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 10.04 71.23 0.71 -0.92 16 2 C -0.10 -2.25 5.89 -19.79 -0.12 -2.37 16 3 C 0.09 1.83 10.85 84.68 0.92 2.74 16 4 N -0.47 -12.08 10.33 -186.22 -1.92 -14.01 16 5 C 0.11 3.19 7.29 84.87 0.62 3.81 16 6 Cl -0.03 -0.64 27.94 -2.72 -0.08 -0.72 16 7 C 0.14 4.34 6.45 38.24 0.25 4.59 16 8 N -0.67 -20.75 5.21 -316.76 -1.65 -22.40 16 9 C 0.70 27.59 8.35 179.05 1.49 29.08 16 10 O -0.61 -28.72 13.21 -3.99 -0.05 -28.77 16 11 N -0.71 -28.60 5.07 -461.40 -2.34 -30.95 16 12 C 0.29 14.47 2.56 44.24 0.11 14.58 16 13 H 0.00 0.25 7.58 -2.39 -0.02 0.23 16 14 C -0.13 -6.55 9.26 71.98 0.67 -5.88 16 15 C -0.55 -28.22 8.73 25.60 0.22 -27.99 16 16 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 17 C 0.02 0.94 5.30 84.65 0.45 1.39 16 18 N -0.92 -51.18 11.32 21.45 0.24 -50.93 16 19 Si 0.97 41.15 29.54 68.60 2.03 43.18 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 21 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 22 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 23 C -0.10 -3.13 8.50 22.58 0.19 -2.94 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 26 H 0.10 0.92 8.09 -2.38 -0.02 0.90 16 27 H 0.20 2.37 8.06 -2.91 -0.02 2.34 16 28 H 0.42 10.60 7.78 -92.71 -0.72 9.87 16 29 H 0.40 13.58 8.56 -92.71 -0.79 12.79 16 30 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 31 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.15 5.14 5.89 -2.91 -0.02 5.12 16 Total: -1.00 -65.25 307.77 1.39 -63.86 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: -0.36 Total: 24.64 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 5.52 Total: 16.09 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -5.67 Total: -118.28 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.05 Total: -28.77 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -65.25 1.39 -63.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320644641.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.027 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds