Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46509 * 193.73231 * 3 2 1 5 5 C 1.36813 * 119.99946 * 69.50627 * 4 3 2 6 6 H 1.08003 * 119.99907 * 189.94590 * 5 4 3 7 7 C 1.39090 * 120.00291 * 9.93586 * 5 4 3 8 8 N 1.31335 * 119.99722 * 318.71944 * 7 5 4 9 9 Si 1.86798 * 119.99900 * 138.71444 * 7 5 4 10 10 H 1.48496 * 109.47222 * 90.00558 * 9 7 5 11 11 H 1.48500 * 109.47062 * 210.00603 * 9 7 5 12 12 H 1.48502 * 109.47162 * 330.00332 * 9 7 5 13 13 C 1.34779 * 119.99732 * 249.50223 * 4 3 2 14 14 O 1.21599 * 119.99538 * 185.78753 * 13 4 3 15 15 C 1.47695 * 120.00249 * 5.79127 * 13 4 3 16 16 C 1.40667 * 120.28840 * 31.61332 * 15 13 4 17 17 N 1.30795 * 121.50982 * 179.71039 * 16 15 13 18 18 C 1.33781 * 121.80484 * 0.54790 * 17 16 15 19 19 N 1.33869 * 120.59891 * 179.67782 * 18 17 16 20 20 C 1.31347 * 119.85128 * 180.02562 * 19 18 17 21 21 C 1.39740 * 120.77621 * 0.02562 * 20 19 18 22 22 N 1.31321 * 120.56220 * 0.02562 * 21 20 19 23 23 C 1.33690 * 119.69687 * 359.97421 * 22 21 20 24 24 C 1.39006 * 120.28737 * 211.88458 * 15 13 4 25 25 H 1.08996 * 109.47632 * 313.72733 * 3 2 1 26 26 H 1.09001 * 109.47037 * 73.73775 * 3 2 1 27 27 H 0.97001 * 119.99443 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.24366 * 359.97438 * 16 15 13 29 29 H 1.07996 * 119.61654 * 180.02562 * 20 19 18 30 30 H 1.07999 * 119.72107 * 179.97438 * 21 20 19 31 31 H 1.07998 * 121.00001 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3427 0.3279 5 6 2.9323 1.8400 1.5919 6 1 3.1426 2.8798 1.7946 7 6 2.4950 1.0066 2.6161 8 7 1.5397 0.1341 2.3900 9 14 3.2667 1.1281 4.3129 10 1 2.5137 2.1135 5.1297 11 1 3.2207 -0.2009 4.9739 12 1 4.6791 1.5682 4.1840 13 6 3.7052 2.0874 -0.6157 14 8 4.2031 3.1563 -0.3188 15 6 3.7685 1.6052 -2.0103 16 6 2.7326 0.8105 -2.5338 17 7 2.7614 0.3753 -3.7669 18 6 3.7796 0.6531 -4.5890 19 7 3.7873 0.1897 -5.8449 20 6 4.7946 0.4710 -6.6394 21 6 5.8638 1.2505 -6.1899 22 7 5.8807 1.7163 -4.9622 23 6 4.8660 1.4426 -4.1359 24 6 4.8549 1.9280 -2.8151 25 1 2.9718 -0.7095 0.7426 26 1 2.9715 -0.2870 -0.9866 27 1 1.2351 -0.4474 3.1042 28 1 1.8922 0.5575 -1.9045 29 1 4.7968 0.0955 -7.6520 30 1 6.6835 1.4711 -6.8576 31 1 5.6661 2.5331 -2.4381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323859764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 120.998208 kcal Electronic energy + Delta-G solvation = -21054.763144 eV Core-core repulsion = 17724.852382 eV Total energy + Delta-G solvation = -3329.910763 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.63753 -39.60998 -37.66374 -36.14112 -34.95941 -34.38720 -32.57141 -31.73574 -31.00279 -27.93113 -26.41153 -25.31914 -24.43663 -22.73918 -20.90486 -19.18281 -18.41062 -17.95701 -17.68314 -16.49554 -16.00943 -15.55830 -15.44869 -14.92561 -14.85752 -14.36547 -13.72499 -13.53777 -13.43746 -13.04763 -12.75875 -12.40446 -12.15637 -11.80672 -11.75700 -11.73134 -11.46462 -11.31810 -10.81757 -10.65931 -10.60531 -10.47530 -9.31153 -9.24770 -9.15626 -8.93992 -8.64913 -8.50350 -7.01743 -4.10693 -0.02637 0.25882 1.81774 2.46115 2.93850 3.08525 3.15702 3.43559 3.48718 3.57372 3.79932 3.89514 3.97233 4.05524 4.07502 4.41001 4.54544 4.61941 4.78505 4.85430 4.98972 5.04209 5.15343 5.35668 5.54167 5.73458 5.87680 6.06723 6.13992 6.39361 6.92283 7.07806 7.42302 7.57553 7.92212 7.95902 8.64918 8.70831 8.83060 9.43773 10.00373 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028997 B = 0.004880 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.401913 B = 5736.905538 C = 6441.068975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.242 3.758 3 C 0.197 3.803 4 N -0.413 5.413 5 C -0.328 4.328 6 H 0.123 0.877 7 C 0.054 3.946 8 N -0.819 5.819 9 Si 0.912 3.088 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.261 1.261 13 C 0.470 3.530 14 O -0.567 6.567 15 C -0.137 4.137 16 C 0.171 3.829 17 N -0.457 5.457 18 C 0.254 3.746 19 N -0.416 5.416 20 C 0.094 3.906 21 C 0.068 3.932 22 N -0.411 5.411 23 C 0.030 3.970 24 C 0.003 3.997 25 H 0.115 0.885 26 H 0.097 0.903 27 H 0.284 0.716 28 H 0.178 0.822 29 H 0.179 0.821 30 H 0.178 0.822 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.031 -3.122 -11.123 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.076 4.076 3 C 0.070 3.930 4 N -0.130 5.130 5 C -0.453 4.453 6 H 0.140 0.860 7 C -0.157 4.157 8 N -0.452 5.452 9 Si 0.736 3.264 10 H -0.199 1.199 11 H -0.203 1.203 12 H -0.185 1.185 13 C 0.261 3.739 14 O -0.452 6.452 15 C -0.145 4.145 16 C -0.006 4.006 17 N -0.167 5.167 18 C 0.014 3.986 19 N -0.131 5.131 20 C -0.085 4.085 21 C -0.109 4.109 22 N -0.125 5.125 23 C -0.096 4.096 24 C -0.025 4.025 25 H 0.132 0.868 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.194 0.806 29 H 0.196 0.804 30 H 0.195 0.805 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 5.690 -3.267 -11.026 12.831 hybrid contribution 1.215 0.320 1.181 1.725 sum 6.906 -2.947 -9.845 12.381 Atomic orbital electron populations 1.80903 1.13062 1.06882 1.11959 1.28402 0.94665 0.93923 0.90649 1.19425 0.82917 0.88547 1.02154 1.43730 1.46618 1.12205 1.10496 1.19681 1.45860 0.98374 0.81434 0.85991 1.25402 0.93754 0.95253 1.01281 1.69922 1.17778 1.21409 1.36087 0.86181 0.81233 0.78179 0.80824 1.19855 1.20339 1.18523 1.17199 0.86999 0.86646 0.83094 1.90679 1.51390 1.22659 1.80437 1.21449 0.95805 0.99355 0.97904 1.23895 0.97132 0.89343 0.90240 1.67511 1.23584 1.22025 1.03536 1.20037 0.91182 0.95120 0.92228 1.68250 1.24732 1.17951 1.02121 1.24159 0.89431 0.94532 1.00402 1.24119 0.99075 0.94550 0.93175 1.68605 1.23392 1.17099 1.03436 1.20202 0.93485 0.99905 0.96035 1.21596 0.97238 0.94482 0.89232 0.86779 0.88545 0.90444 0.80584 0.80417 0.80510 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.24 18.49 42.15 0.78 -9.46 16 2 C 0.24 5.09 10.52 -20.76 -0.22 4.87 16 3 C 0.20 3.69 4.77 -6.82 -0.03 3.66 16 4 N -0.41 -9.04 2.69 -119.06 -0.32 -9.36 16 5 C -0.33 -7.87 9.09 -15.01 -0.14 -8.01 16 6 H 0.12 3.13 7.46 -52.48 -0.39 2.74 16 7 C 0.05 1.22 4.82 -17.45 -0.08 1.14 16 8 N -0.82 -18.73 9.07 55.50 0.50 -18.23 16 9 Si 0.91 17.86 29.69 -169.99 -5.05 12.82 16 10 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 11 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 12 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 13 C 0.47 10.19 7.36 -12.40 -0.09 10.10 16 14 O -0.57 -14.09 16.41 5.28 0.09 -14.01 16 15 C -0.14 -2.50 5.36 -104.83 -0.56 -3.06 16 16 C 0.17 3.00 8.52 -17.08 -0.15 2.85 16 17 N -0.46 -8.21 10.39 -12.26 -0.13 -8.34 16 18 C 0.25 4.29 7.60 -157.59 -1.20 3.09 16 19 N -0.42 -6.17 10.55 -12.39 -0.13 -6.30 16 20 C 0.09 0.93 11.21 -17.20 -0.19 0.74 16 21 C 0.07 0.65 11.22 -17.21 -0.19 0.46 16 22 N -0.41 -5.66 10.46 -10.77 -0.11 -5.77 16 23 C 0.03 0.48 6.59 -84.78 -0.56 -0.08 16 24 C 0.00 0.05 9.70 -38.36 -0.37 -0.32 16 25 H 0.11 2.07 7.12 -51.93 -0.37 1.70 16 26 H 0.10 1.54 4.35 -51.93 -0.23 1.31 16 27 H 0.28 6.19 8.31 -40.82 -0.34 5.85 16 28 H 0.18 3.12 4.10 -52.49 -0.22 2.90 16 29 H 0.18 0.91 8.06 -52.49 -0.42 0.48 16 30 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.16 2.59 7.99 -52.49 -0.42 2.17 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -30.66 281.27 -5.52 -36.17 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -1.60 Total: 2.80 kcal Atomic # 6 Polarization: 19.22 SS G_CDS: -3.78 Total: 15.44 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: 0.59 Total: -57.46 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.05 Total: 12.82 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.66 -5.52 -36.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323859764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.170 kcal (2) G-P(sol) polarization free energy of solvation -30.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds