Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46506 * 109.46509 * 193.73231 * 3 2 1 5 5 C 1.36813 * 119.99946 * 69.50627 * 4 3 2 6 6 H 1.08003 * 119.99907 * 189.94590 * 5 4 3 7 7 C 1.39090 * 120.00291 * 9.93586 * 5 4 3 8 8 N 1.31335 * 119.99722 * 318.71944 * 7 5 4 9 9 Si 1.86798 * 119.99900 * 138.71444 * 7 5 4 10 10 H 1.48496 * 109.47222 * 90.00558 * 9 7 5 11 11 H 1.48500 * 109.47062 * 210.00603 * 9 7 5 12 12 H 1.48502 * 109.47162 * 330.00332 * 9 7 5 13 13 C 1.34779 * 119.99732 * 249.50223 * 4 3 2 14 14 O 1.21599 * 119.99538 * 185.78753 * 13 4 3 15 15 C 1.47695 * 120.00249 * 5.79127 * 13 4 3 16 16 C 1.40667 * 120.28840 * 31.61332 * 15 13 4 17 17 N 1.30795 * 121.50982 * 179.71039 * 16 15 13 18 18 C 1.33781 * 121.80484 * 0.54790 * 17 16 15 19 19 N 1.33869 * 120.59891 * 179.67782 * 18 17 16 20 20 C 1.31347 * 119.85128 * 180.02562 * 19 18 17 21 21 C 1.39740 * 120.77621 * 0.02562 * 20 19 18 22 22 N 1.31321 * 120.56220 * 0.02562 * 21 20 19 23 23 C 1.33690 * 119.69687 * 359.97421 * 22 21 20 24 24 C 1.39006 * 120.28737 * 211.88458 * 15 13 4 25 25 H 1.08996 * 109.47632 * 313.72733 * 3 2 1 26 26 H 1.09001 * 109.47037 * 73.73775 * 3 2 1 27 27 H 0.97001 * 119.99443 * 179.97438 * 8 7 5 28 28 H 1.08001 * 119.24366 * 359.97438 * 16 15 13 29 29 H 1.07996 * 119.61654 * 180.02562 * 20 19 18 30 30 H 1.07999 * 119.72107 * 179.97438 * 21 20 19 31 31 H 1.07998 * 121.00001 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0956 1.3427 0.3279 5 6 2.9323 1.8400 1.5919 6 1 3.1426 2.8798 1.7946 7 6 2.4950 1.0066 2.6161 8 7 1.5397 0.1341 2.3900 9 14 3.2667 1.1281 4.3129 10 1 2.5137 2.1135 5.1297 11 1 3.2207 -0.2009 4.9739 12 1 4.6791 1.5682 4.1840 13 6 3.7052 2.0874 -0.6157 14 8 4.2031 3.1563 -0.3188 15 6 3.7685 1.6052 -2.0103 16 6 2.7326 0.8105 -2.5338 17 7 2.7614 0.3753 -3.7669 18 6 3.7796 0.6531 -4.5890 19 7 3.7873 0.1897 -5.8449 20 6 4.7946 0.4710 -6.6394 21 6 5.8638 1.2505 -6.1899 22 7 5.8807 1.7163 -4.9622 23 6 4.8660 1.4426 -4.1359 24 6 4.8549 1.9280 -2.8151 25 1 2.9718 -0.7095 0.7426 26 1 2.9715 -0.2870 -0.9866 27 1 1.2351 -0.4474 3.1042 28 1 1.8922 0.5575 -1.9045 29 1 4.7968 0.0955 -7.6520 30 1 6.6835 1.4711 -6.8576 31 1 5.6661 2.5331 -2.4381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323859764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 98.900626 kcal Electronic energy + Delta-G solvation = -21055.721367 eV Core-core repulsion = 17724.852382 eV Total energy + Delta-G solvation = -3330.868986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.081 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.80894 -41.10462 -39.00452 -37.86602 -36.19739 -36.00888 -34.24337 -33.02170 -32.23964 -29.50589 -27.82263 -26.61747 -25.76961 -23.97606 -22.32456 -20.50109 -20.11399 -19.15505 -18.99211 -18.13280 -17.30632 -17.00466 -16.65187 -16.38485 -16.07604 -15.78973 -15.31346 -15.03730 -14.90384 -14.34490 -14.17464 -13.87359 -13.57915 -13.46747 -13.17666 -12.99740 -12.96810 -12.78823 -12.40935 -12.26919 -12.08505 -11.85976 -11.02661 -10.78659 -10.47943 -10.25671 -10.19537 -9.84934 -8.72970 -5.93657 -1.14935 -0.89208 0.63882 1.19453 1.41539 1.48170 1.59756 1.83253 2.02782 2.13675 2.27020 2.46176 2.63887 2.79480 2.89055 2.90710 3.13975 3.40759 3.46631 3.54085 3.69014 3.85313 4.01017 4.14992 4.38900 4.40069 4.62108 4.70678 4.83479 5.30331 5.34074 5.82483 5.85940 6.21172 6.36981 6.76908 6.91275 7.01432 7.12331 7.72258 8.29656 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.028997 B = 0.004880 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.401913 B = 5736.905538 C = 6441.068975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C 0.257 3.743 3 C 0.202 3.798 4 N -0.424 5.424 5 C -0.371 4.371 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.838 5.838 9 Si 0.972 3.028 10 H -0.279 1.279 11 H -0.265 1.265 12 H -0.268 1.268 13 C 0.475 3.525 14 O -0.606 6.606 15 C -0.152 4.152 16 C 0.168 3.832 17 N -0.472 5.472 18 C 0.241 3.759 19 N -0.453 5.453 20 C 0.128 3.872 21 C 0.096 3.904 22 N -0.434 5.434 23 C 0.016 3.984 24 C 0.019 3.981 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.288 0.712 28 H 0.170 0.830 29 H 0.238 0.762 30 H 0.237 0.763 31 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.135 -4.177 -14.469 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.061 4.061 3 C 0.076 3.924 4 N -0.140 5.140 5 C -0.496 4.496 6 H 0.110 0.890 7 C -0.174 4.174 8 N -0.471 5.471 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.193 1.193 13 C 0.266 3.734 14 O -0.493 6.493 15 C -0.160 4.160 16 C -0.008 4.008 17 N -0.181 5.181 18 C 0.002 3.998 19 N -0.168 5.168 20 C -0.053 4.053 21 C -0.082 4.082 22 N -0.149 5.149 23 C -0.107 4.107 24 C -0.010 4.010 25 H 0.139 0.861 26 H 0.144 0.856 27 H 0.099 0.901 28 H 0.187 0.813 29 H 0.254 0.746 30 H 0.253 0.747 31 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.754 -4.342 -14.320 16.853 hybrid contribution 0.794 0.666 1.637 1.937 sum 8.548 -3.676 -12.683 15.731 Atomic orbital electron populations 1.80883 1.14149 1.08069 1.13428 1.28785 0.95088 0.92783 0.89415 1.19595 0.81544 0.87280 1.04004 1.43730 1.47099 1.13147 1.10041 1.19443 1.49087 0.97904 0.83169 0.88954 1.25909 0.93198 0.94752 1.03520 1.69934 1.18022 1.22119 1.37034 0.85309 0.79631 0.78347 0.77248 1.20434 1.18898 1.19302 1.17695 0.85611 0.85868 0.84209 1.90629 1.52693 1.24399 1.81611 1.21036 0.97384 1.01464 0.96110 1.23570 0.96759 0.89959 0.90462 1.67474 1.24615 1.22432 1.03581 1.20245 0.91011 0.95433 0.93121 1.68371 1.27222 1.19624 1.01622 1.25313 0.87123 0.91227 1.01615 1.25231 0.99835 0.91192 0.91955 1.68698 1.22669 1.18468 1.05074 1.20082 0.94319 1.00351 0.95993 1.21695 0.96446 0.93068 0.89757 0.86079 0.85628 0.90097 0.81306 0.74621 0.74656 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -22.85 18.49 20.01 0.37 -22.48 16 2 C 0.26 11.16 10.52 89.44 0.94 12.10 16 3 C 0.20 7.82 4.77 84.57 0.40 8.22 16 4 N -0.42 -19.41 2.69 -648.86 -1.74 -21.15 16 5 C -0.37 -18.75 9.09 84.12 0.76 -17.99 16 6 H 0.09 5.11 7.46 -2.91 -0.02 5.09 16 7 C 0.04 1.66 4.82 84.97 0.41 2.07 16 8 N -0.84 -39.15 9.07 21.69 0.20 -38.96 16 9 Si 0.97 37.63 29.69 68.60 2.04 39.67 16 10 H -0.28 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 12 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 13 C 0.48 21.62 7.36 86.74 0.64 22.25 16 14 O -0.61 -31.78 16.41 -4.03 -0.07 -31.85 16 15 C -0.15 -5.71 5.36 -20.00 -0.11 -5.82 16 16 C 0.17 6.03 8.52 85.44 0.73 6.75 16 17 N -0.47 -16.80 10.39 -192.70 -2.00 -18.81 16 18 C 0.24 7.71 7.60 134.96 1.03 8.73 16 19 N -0.45 -11.84 10.55 -193.10 -2.04 -13.87 16 20 C 0.13 1.74 11.21 85.13 0.95 2.69 16 21 C 0.10 1.24 11.22 85.13 0.96 2.20 16 22 N -0.43 -10.34 10.46 -188.00 -1.97 -12.31 16 23 C 0.02 0.50 6.59 40.33 0.27 0.76 16 24 C 0.02 0.63 9.70 23.06 0.22 0.85 16 25 H 0.12 4.50 7.12 -2.39 -0.02 4.48 16 26 H 0.13 4.10 4.35 -2.39 -0.01 4.09 16 27 H 0.29 12.67 8.31 -92.71 -0.77 11.90 16 28 H 0.17 6.21 4.10 -2.91 -0.01 6.19 16 29 H 0.24 0.40 8.06 -2.91 -0.02 0.37 16 30 H 0.24 0.27 8.06 -2.91 -0.02 0.24 16 31 H 0.16 5.27 7.99 -2.91 -0.02 5.25 16 Total: -1.00 -71.57 281.27 3.21 -68.36 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.22 Total: 8.58 kcal Atomic # 6 Polarization: 35.62 SS G_CDS: 7.20 Total: 42.83 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -7.18 Total: -127.58 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.07 Total: -31.85 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.04 Total: 39.67 kcal Total: -71.57 3.21 -68.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323859764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.259 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds