Wall clock time and date at job start Tue Mar 31 2020 05:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47287 * 2 1 4 4 C 1.37197 * 120.00335 * 265.78794 * 3 2 1 5 5 H 1.07996 * 120.00196 * 146.05527 * 4 3 2 6 6 C 1.38888 * 119.99480 * 326.05425 * 4 3 2 7 7 N 1.31460 * 120.00341 * 338.00026 * 6 4 3 8 8 Si 1.86800 * 119.99768 * 158.00495 * 6 4 3 9 9 H 1.48505 * 109.47513 * 59.99544 * 8 6 4 10 10 H 1.48496 * 109.47309 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47173 * 300.00098 * 8 6 4 12 12 C 1.34780 * 119.99984 * 85.79086 * 3 2 1 13 13 O 1.21511 * 119.99973 * 179.97438 * 12 3 2 14 14 O 1.34663 * 119.99638 * 0.27614 * 12 3 2 15 15 C 1.45210 * 116.99628 * 179.72663 * 14 12 3 16 16 C 1.50697 * 109.47051 * 179.97438 * 15 14 12 17 17 C 1.38267 * 119.99103 * 269.72597 * 16 15 14 18 18 C 1.38228 * 120.02289 * 179.76743 * 17 16 15 19 19 C 1.38232 * 120.01320 * 0.50347 * 18 17 16 20 20 C 1.38334 * 119.98858 * 359.74940 * 19 18 17 21 21 Cl 1.73595 * 120.01352 * 180.02562 * 20 19 18 22 22 C 1.38191 * 119.99662 * 89.99760 * 16 15 14 23 23 H 1.09000 * 109.46722 * 299.99812 * 1 2 3 24 24 H 1.09001 * 109.47401 * 59.99526 * 1 2 3 25 25 H 1.08994 * 109.47526 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46722 * 240.00188 * 2 1 3 27 27 H 1.09001 * 109.47401 * 120.00474 * 2 1 3 28 28 H 0.96998 * 120.00008 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46868 * 299.99865 * 15 14 12 30 30 H 1.09002 * 109.46902 * 59.99473 * 15 14 12 31 31 H 1.07998 * 119.98703 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.98632 * 180.25055 * 18 17 16 33 33 H 1.08004 * 120.00711 * 179.76729 * 19 18 17 34 34 H 1.08002 * 120.00299 * 359.95144 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3293 1.9989 -1.1849 5 1 2.1578 3.0586 -1.3027 6 6 2.8648 1.2612 -2.2329 7 7 3.4699 0.1195 -1.9913 8 14 2.7250 1.8916 -3.9857 9 1 3.4003 3.2099 -4.0931 10 1 3.3722 0.9277 -4.9115 11 1 1.2919 2.0389 -4.3461 12 6 2.1622 2.0450 1.1641 13 8 2.5677 3.1905 1.1641 14 8 1.8623 1.4368 2.3275 15 6 2.0472 2.2104 3.5425 16 6 1.6633 1.3724 4.7347 17 6 0.3623 1.3911 5.2025 18 6 0.0083 0.6191 6.2931 19 6 0.9573 -0.1642 6.9230 20 6 2.2603 -0.1793 6.4586 21 17 3.4524 -1.1631 7.2488 22 6 2.6128 0.5898 5.3637 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8442 -0.3954 -2.7231 29 1 3.0923 2.5078 3.6283 30 1 1.4181 3.0998 3.5061 31 1 -0.3783 2.0065 4.7136 32 1 -1.0089 0.6310 6.6555 33 1 0.6815 -0.7645 7.7775 34 1 3.6298 0.5781 5.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331332227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:07 Heat of formation + Delta-G solvation = -58.149143 kcal Electronic energy + Delta-G solvation = -19616.811940 eV Core-core repulsion = 16347.947508 eV Total energy + Delta-G solvation = -3268.864432 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70917 -38.97151 -36.65414 -36.10748 -34.64977 -32.21854 -31.72573 -30.84538 -29.47514 -26.61082 -24.84678 -22.79989 -22.32478 -21.50755 -20.16061 -17.44104 -16.96930 -16.59128 -16.02983 -15.77442 -15.38554 -15.05625 -14.56442 -13.91101 -13.77511 -13.51389 -13.36526 -12.90097 -12.63722 -12.17090 -11.84723 -11.75128 -11.63088 -11.46120 -11.36708 -11.05224 -10.96070 -10.85239 -10.41223 -10.37138 -10.04283 -9.81138 -9.22348 -9.00983 -8.97069 -8.80774 -7.56806 -6.35285 -3.99761 0.98171 1.11205 2.00555 3.15623 3.19668 3.25102 3.33551 3.79144 4.09722 4.28442 4.63115 4.69035 4.93520 5.02528 5.13195 5.19948 5.37522 5.51920 5.65408 5.77731 5.83216 6.07448 6.10752 6.17493 6.33387 6.38220 6.43811 6.64815 6.68374 6.95017 7.23075 7.35077 7.59019 8.24147 8.44194 9.12077 9.35126 10.03482 10.69254 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.003791 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.227006 B = 7385.100063 C = 7601.745540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 N -0.422 5.422 4 C -0.299 4.299 5 H 0.094 0.906 6 C 0.034 3.966 7 N -0.868 5.868 8 Si 0.927 3.073 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.592 3.408 13 O -0.608 6.608 14 O -0.374 6.374 15 C 0.127 3.873 16 C -0.070 4.070 17 C -0.092 4.092 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.038 4.038 21 Cl -0.074 7.074 22 C -0.086 4.086 23 H 0.042 0.958 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.113 0.887 27 H 0.051 0.949 28 H 0.269 0.731 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.835 -3.146 14.701 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.148 5.148 4 C -0.426 4.426 5 H 0.112 0.888 6 C -0.170 4.170 7 N -0.506 5.506 8 Si 0.753 3.247 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.198 1.198 12 C 0.347 3.653 13 O -0.501 6.501 14 O -0.290 6.290 15 C 0.051 3.949 16 C -0.071 4.071 17 C -0.110 4.110 18 C -0.130 4.130 19 C -0.127 4.127 20 C -0.064 4.064 21 Cl -0.045 7.045 22 C -0.105 4.105 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.131 0.869 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.502 -3.057 14.709 15.999 hybrid contribution 0.165 0.128 -0.667 0.699 sum -5.337 -2.928 14.042 15.304 Atomic orbital electron populations 1.22130 0.98205 1.00188 1.01275 1.21562 0.91857 0.84321 1.04173 1.42523 1.58508 1.12633 1.01170 1.19416 1.41350 0.95703 0.86143 0.88786 1.25387 0.94253 0.96659 1.00678 1.69947 1.32668 1.15153 1.32850 0.86000 0.78719 0.78717 0.81276 1.19672 1.20883 1.19776 1.18775 0.80570 0.85290 0.80681 1.90794 1.54561 1.18357 1.86383 1.86296 1.83429 1.45362 1.13914 1.21373 1.01912 0.91967 0.79609 1.19661 0.93585 0.97937 0.95880 1.21246 0.95521 0.98370 0.95843 1.21090 0.99405 0.96519 0.95989 1.21063 0.91222 0.99820 1.00581 1.20874 0.90754 0.97896 0.96922 1.98367 1.57126 1.69288 1.79698 1.21043 1.00838 0.94741 0.93869 0.93864 0.92700 0.93209 0.86929 0.93018 0.92044 0.90847 0.90846 0.85053 0.84908 0.85009 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.21 37.16 0.38 -2.73 16 2 C 0.10 2.43 5.65 -4.05 -0.02 2.41 16 3 N -0.42 -11.16 2.56 -120.23 -0.31 -11.46 16 4 C -0.30 -8.35 8.98 -14.91 -0.13 -8.48 16 5 H 0.09 2.70 7.70 -52.49 -0.40 2.30 16 6 C 0.03 0.91 4.94 -17.47 -0.09 0.82 16 7 N -0.87 -23.44 11.30 55.49 0.63 -22.81 16 8 Si 0.93 20.40 29.61 -169.99 -5.03 15.37 16 9 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 12 C 0.59 15.35 8.33 54.06 0.45 15.80 16 13 O -0.61 -17.22 15.96 -19.28 -0.31 -17.53 16 14 O -0.37 -8.12 9.10 -40.39 -0.37 -8.49 16 15 C 0.13 2.19 5.60 36.00 0.20 2.39 16 16 C -0.07 -1.00 5.52 -104.63 -0.58 -1.57 16 17 C -0.09 -1.10 9.70 -39.57 -0.38 -1.48 16 18 C -0.11 -1.12 10.05 -39.59 -0.40 -1.52 16 19 C -0.11 -1.12 9.83 -39.55 -0.39 -1.51 16 20 C -0.04 -0.46 6.32 -39.50 -0.25 -0.71 16 21 Cl -0.07 -0.84 28.96 -51.86 -1.50 -2.34 16 22 C -0.09 -1.17 9.49 -39.55 -0.38 -1.54 16 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.11 2.80 5.32 -51.93 -0.28 2.53 16 27 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 30 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 31 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 34 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 315.07 15.07 4.75 4.75 Total: -1.00 -30.93 315.07 -7.73 -38.66 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -4.00 Total: 1.98 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -1.58 Total: 1.87 kcal Atomic # 7 Polarization: -34.60 SS G_CDS: 0.32 Total: -34.28 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.68 Total: -26.01 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.93 -7.73 -38.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331332227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.492 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds