Wall clock time and date at job start Tue Mar 31 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47287 * 2 1 4 4 C 1.37197 * 120.00335 * 265.78794 * 3 2 1 5 5 H 1.07996 * 120.00196 * 146.05527 * 4 3 2 6 6 C 1.38888 * 119.99480 * 326.05425 * 4 3 2 7 7 N 1.31460 * 120.00341 * 338.00026 * 6 4 3 8 8 Si 1.86800 * 119.99768 * 158.00495 * 6 4 3 9 9 H 1.48505 * 109.47513 * 59.99544 * 8 6 4 10 10 H 1.48496 * 109.47309 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47173 * 300.00098 * 8 6 4 12 12 C 1.34780 * 119.99984 * 85.79086 * 3 2 1 13 13 O 1.21511 * 119.99973 * 179.97438 * 12 3 2 14 14 O 1.34663 * 119.99638 * 0.27614 * 12 3 2 15 15 C 1.45210 * 116.99628 * 179.72663 * 14 12 3 16 16 C 1.50697 * 109.47051 * 179.97438 * 15 14 12 17 17 C 1.38267 * 119.99103 * 269.72597 * 16 15 14 18 18 C 1.38228 * 120.02289 * 179.76743 * 17 16 15 19 19 C 1.38232 * 120.01320 * 0.50347 * 18 17 16 20 20 C 1.38334 * 119.98858 * 359.74940 * 19 18 17 21 21 Cl 1.73595 * 120.01352 * 180.02562 * 20 19 18 22 22 C 1.38191 * 119.99662 * 89.99760 * 16 15 14 23 23 H 1.09000 * 109.46722 * 299.99812 * 1 2 3 24 24 H 1.09001 * 109.47401 * 59.99526 * 1 2 3 25 25 H 1.08994 * 109.47526 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46722 * 240.00188 * 2 1 3 27 27 H 1.09001 * 109.47401 * 120.00474 * 2 1 3 28 28 H 0.96998 * 120.00008 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.46868 * 299.99865 * 15 14 12 30 30 H 1.09002 * 109.46902 * 59.99473 * 15 14 12 31 31 H 1.07998 * 119.98703 * 359.97438 * 17 16 15 32 32 H 1.07995 * 119.98632 * 180.25055 * 18 17 16 33 33 H 1.08004 * 120.00711 * 179.76729 * 19 18 17 34 34 H 1.08002 * 120.00299 * 359.95144 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3293 1.9989 -1.1849 5 1 2.1578 3.0586 -1.3027 6 6 2.8648 1.2612 -2.2329 7 7 3.4699 0.1195 -1.9913 8 14 2.7250 1.8916 -3.9857 9 1 3.4003 3.2099 -4.0931 10 1 3.3722 0.9277 -4.9115 11 1 1.2919 2.0389 -4.3461 12 6 2.1622 2.0450 1.1641 13 8 2.5677 3.1905 1.1641 14 8 1.8623 1.4368 2.3275 15 6 2.0472 2.2104 3.5425 16 6 1.6633 1.3724 4.7347 17 6 0.3623 1.3911 5.2025 18 6 0.0083 0.6191 6.2931 19 6 0.9573 -0.1642 6.9230 20 6 2.2603 -0.1793 6.4586 21 17 3.4524 -1.1631 7.2488 22 6 2.6128 0.5898 5.3637 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 3.8442 -0.3954 -2.7231 29 1 3.0923 2.5078 3.6283 30 1 1.4181 3.0998 3.5061 31 1 -0.3783 2.0065 4.7136 32 1 -1.0089 0.6310 6.6555 33 1 0.6815 -0.7645 7.7775 34 1 3.6298 0.5781 5.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331332227.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:06 Heat of formation + Delta-G solvation = -74.742202 kcal Electronic energy + Delta-G solvation = -19617.531469 eV Core-core repulsion = 16347.947508 eV Total energy + Delta-G solvation = -3269.583961 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.27189 -40.28641 -38.05270 -37.43479 -36.61516 -34.00790 -33.05641 -31.77175 -31.28483 -28.04987 -26.68206 -24.10411 -23.71443 -22.67215 -21.96269 -19.26017 -18.54849 -18.14265 -17.58949 -17.35698 -16.68822 -16.43951 -16.17254 -15.50941 -14.87915 -14.75918 -14.51840 -14.47134 -14.35012 -13.61849 -13.59337 -13.47399 -12.83568 -12.70430 -12.60272 -12.50145 -12.42119 -12.27779 -12.09452 -11.87233 -11.83745 -11.53915 -11.18777 -10.95110 -10.03851 -9.75299 -9.59327 -8.37364 -6.11373 0.00229 0.17824 1.08650 1.42005 1.44760 1.54118 1.78437 2.10663 2.39585 2.69325 3.00136 3.42264 3.75117 3.79004 3.98212 4.14895 4.20004 4.36787 4.38371 4.45672 4.63094 4.68911 4.79762 4.84628 5.02055 5.16238 5.23891 5.28505 5.37629 5.44079 5.49679 5.59805 5.75428 6.18024 6.41661 7.07305 7.33114 8.02393 8.66730 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.027358 B = 0.003791 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.227006 B = 7385.100063 C = 7601.745540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.105 3.895 3 N -0.433 5.433 4 C -0.337 4.337 5 H 0.074 0.926 6 C 0.003 3.997 7 N -0.890 5.890 8 Si 0.995 3.005 9 H -0.274 1.274 10 H -0.271 1.271 11 H -0.261 1.261 12 C 0.585 3.415 13 O -0.644 6.644 14 O -0.371 6.371 15 C 0.124 3.876 16 C -0.090 4.090 17 C -0.094 4.094 18 C -0.100 4.100 19 C -0.099 4.099 20 C -0.047 4.047 21 Cl -0.070 7.070 22 C -0.101 4.101 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.277 0.723 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.143 0.857 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.581 -4.256 15.364 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 N -0.160 5.160 4 C -0.463 4.463 5 H 0.092 0.908 6 C -0.199 4.199 7 N -0.527 5.527 8 Si 0.817 3.183 9 H -0.199 1.199 10 H -0.195 1.195 11 H -0.185 1.185 12 C 0.341 3.659 13 O -0.540 6.540 14 O -0.286 6.286 15 C 0.049 3.951 16 C -0.090 4.090 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.117 4.117 20 C -0.074 4.074 21 Cl -0.041 7.041 22 C -0.120 4.120 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.161 0.839 32 H 0.189 0.811 33 H 0.179 0.821 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.260 -4.202 15.402 17.538 hybrid contribution 0.736 0.419 -0.732 1.120 sum -6.524 -3.782 14.670 16.495 Atomic orbital electron populations 1.22001 0.95125 1.02322 1.01020 1.21628 0.94357 0.82621 1.03237 1.42783 1.58499 1.13558 1.01127 1.19459 1.43680 0.95432 0.87756 0.90830 1.26234 0.92917 0.96595 1.04198 1.70022 1.32366 1.15935 1.34382 0.84993 0.79265 0.78053 0.75995 1.19937 1.19503 1.18518 1.18908 0.80366 0.84931 0.81730 1.90741 1.56161 1.19892 1.87203 1.86283 1.82819 1.45623 1.13916 1.21621 1.01656 0.92788 0.78988 1.19445 0.95120 0.99190 0.95277 1.21468 0.94558 0.98699 0.96513 1.21492 1.01016 0.94758 0.94520 1.21472 0.90215 0.99220 1.00802 1.20986 0.91768 0.97904 0.96718 1.98368 1.57249 1.69046 1.79432 1.21021 1.00464 0.95611 0.94933 0.93573 0.93422 0.89800 0.88549 0.93029 0.91352 0.91882 0.90406 0.83880 0.81127 0.82135 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.54 10.21 71.98 0.74 -4.80 16 2 C 0.10 4.88 5.65 86.38 0.49 5.37 16 3 N -0.43 -23.52 2.56 -764.68 -1.95 -25.47 16 4 C -0.34 -19.29 8.98 84.01 0.75 -18.54 16 5 H 0.07 4.42 7.70 -2.91 -0.02 4.39 16 6 C 0.00 0.17 4.94 84.90 0.42 0.59 16 7 N -0.89 -48.19 11.30 21.65 0.24 -47.95 16 8 Si 0.99 41.61 29.61 68.60 2.03 43.64 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 11 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 12 C 0.59 31.44 8.33 129.79 1.08 32.52 16 13 O -0.64 -38.09 15.96 19.80 0.32 -37.78 16 14 O -0.37 -16.56 9.10 -55.73 -0.51 -17.06 16 15 C 0.12 4.43 5.60 71.23 0.40 4.83 16 16 C -0.09 -2.53 5.52 -19.87 -0.11 -2.64 16 17 C -0.09 -2.07 9.70 22.27 0.22 -1.86 16 18 C -0.10 -1.65 10.05 22.27 0.22 -1.42 16 19 C -0.10 -1.73 9.83 22.29 0.22 -1.51 16 20 C -0.05 -1.08 6.32 22.32 0.14 -0.93 16 21 Cl -0.07 -1.50 28.96 -2.72 -0.08 -1.58 16 22 C -0.10 -2.75 9.49 22.29 0.21 -2.54 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.10 4.84 5.32 -2.39 -0.01 4.82 16 27 H 0.05 2.35 7.51 -2.39 -0.02 2.33 16 28 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 29 H 0.06 2.33 8.08 -2.39 -0.02 2.31 16 30 H 0.08 2.66 8.08 -2.39 -0.02 2.64 16 31 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 32 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -68.24 315.07 5.94 -62.30 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.11 Total: 14.84 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: 4.78 Total: 9.06 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -1.71 Total: -73.42 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -0.19 Total: -54.84 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -68.24 5.94 -62.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331332227.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.441 kcal (2) G-P(sol) polarization free energy of solvation -68.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds