Wall clock time and date at job start Tue Mar 31 2020 05:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81409 * 1 3 3 O 1.42106 * 110.54106 * 2 1 4 4 O 1.42098 * 110.53948 * 223.25161 * 2 1 3 5 5 C 1.76193 * 104.44888 * 111.62690 * 2 1 3 6 6 C 1.39866 * 126.04184 * 89.97708 * 5 2 1 7 7 N 1.30844 * 108.20609 * 180.02562 * 6 5 2 8 8 N 1.40083 * 108.20198 * 359.97438 * 7 6 5 9 9 C 1.46504 * 126.03812 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47110 * 305.02846 * 9 8 7 11 11 H 1.09003 * 109.46786 * 304.99655 * 10 9 8 12 12 C 1.47199 * 109.47288 * 64.99624 * 10 9 8 13 13 N 6.99197 * 97.14958 * 122.24651 * 2 1 3 14 14 C 1.52992 * 109.47142 * 184.99934 * 10 9 8 15 15 C 1.50704 * 109.47168 * 174.99693 * 14 10 9 16 16 H 1.07995 * 119.99727 * 359.97438 * 15 14 10 17 17 C 1.37877 * 119.99820 * 179.97438 * 15 14 10 18 18 N 1.31515 * 120.00208 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99968 * 179.97438 * 17 15 14 20 20 H 1.48509 * 109.46950 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47141 * 120.00210 * 19 17 15 22 22 H 1.48498 * 109.47568 * 240.00478 * 19 17 15 23 23 C 1.34951 * 107.92726 * 359.97438 * 8 7 6 24 24 H 1.09000 * 109.47037 * 308.37516 * 1 2 3 25 25 H 1.08994 * 109.46955 * 68.37483 * 1 2 3 26 26 H 1.08998 * 109.46654 * 188.37462 * 1 2 3 27 27 H 1.08004 * 125.89969 * 0.05693 * 6 5 2 28 28 H 1.09001 * 109.46936 * 65.02250 * 9 8 7 29 29 H 1.08995 * 109.47043 * 185.02459 * 9 8 7 30 30 H 1.08999 * 109.47195 * 294.99371 * 14 10 9 31 31 H 1.09004 * 109.47234 * 54.99671 * 14 10 9 32 32 H 0.97005 * 120.00058 * 179.97438 * 18 17 15 33 33 H 1.07996 * 126.12664 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9118 5 6 2.2537 -0.6288 1.5861 6 6 2.4586 -1.9739 1.9102 7 7 2.7690 -2.0459 3.1792 8 7 2.7720 -0.7469 3.7034 9 6 3.0684 -0.3775 5.0898 10 6 2.1470 -1.1542 6.0326 11 1 1.1087 -0.9819 5.7493 12 6 2.4489 -2.5919 5.9395 13 7 2.6843 -3.7016 5.8675 14 6 2.3694 -0.6784 7.4695 15 6 1.3778 -1.3538 8.3815 16 1 0.6605 -2.0522 7.9765 17 6 1.3864 -1.0800 9.7328 18 7 2.2596 -0.2291 10.2258 19 14 0.1569 -1.9166 10.8631 20 1 -0.7107 -2.8219 10.0673 21 1 0.8849 -2.7053 11.8894 22 1 -0.6808 -0.8884 11.5312 23 6 2.4537 0.1043 2.7057 24 1 -0.3633 0.6380 0.8057 25 1 -0.3633 0.3787 -0.9553 26 1 -0.3632 -1.0167 0.1497 27 1 2.3755 -2.8089 1.2302 28 1 4.1069 -0.6191 5.3161 29 1 2.9067 0.6921 5.2233 30 1 3.3822 -0.9310 7.7833 31 1 2.2322 0.4018 7.5199 32 1 2.2654 -0.0362 11.1764 33 1 2.3717 1.1781 2.7868 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333893869.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:52 Heat of formation + Delta-G solvation = 25.684150 kcal Electronic energy + Delta-G solvation = -19268.634845 eV Core-core repulsion = 16037.742155 eV Total energy + Delta-G solvation = -3230.892690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38773 -37.12729 -36.93020 -35.99471 -34.33430 -33.12738 -31.21685 -30.53315 -29.63227 -27.22507 -24.40244 -22.31190 -21.73271 -21.15987 -18.96298 -18.03378 -17.18762 -16.53397 -16.33903 -15.86830 -15.67446 -15.05211 -14.68250 -14.48241 -13.69908 -13.51018 -13.42963 -13.16287 -13.08935 -12.70171 -12.27167 -12.20487 -12.09010 -11.99986 -11.89426 -11.38981 -11.21014 -11.15095 -10.98133 -10.68889 -10.55372 -10.52461 -9.91813 -9.65314 -9.46260 -9.17910 -8.60130 -6.24326 -4.28398 0.02566 1.52240 2.26906 2.32575 2.93868 3.19650 3.28648 3.32793 3.54685 3.67993 3.84184 3.95140 4.27636 4.37818 4.52514 4.57049 4.62246 4.80742 4.99633 5.14588 5.19056 5.34469 5.39038 5.41883 5.55240 5.96990 6.14202 6.32202 6.72447 7.16634 7.27917 7.42481 7.70313 8.04092 8.42110 8.75708 9.38377 10.86464 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032496 B = 0.003491 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.432703 B = 8019.840848 C = 8181.430394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.541 3.459 3 O -0.948 6.948 4 O -0.944 6.944 5 C -0.809 4.809 6 C 0.121 3.879 7 N -0.277 5.277 8 N -0.351 5.351 9 C 0.125 3.875 10 C 0.001 3.999 11 H 0.106 0.894 12 C 0.239 3.761 13 N -0.451 5.451 14 C 0.032 3.968 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.281 1.281 23 C 0.175 3.825 24 H 0.130 0.870 25 H 0.126 0.874 26 H 0.130 0.870 27 H 0.194 0.806 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.031 0.969 31 H 0.042 0.958 32 H 0.264 0.736 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 5.657 -17.847 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.719 3.281 3 O -0.945 6.945 4 O -0.942 6.942 5 C -0.908 4.908 6 C -0.068 4.068 7 N -0.095 5.095 8 N -0.127 5.127 9 C 0.004 3.996 10 C -0.021 4.021 11 H 0.124 0.876 12 C -0.079 4.079 13 N -0.128 5.128 14 C -0.006 4.006 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.207 1.207 23 C 0.020 3.980 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.211 0.789 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -2.182 3.544 -17.226 17.722 hybrid contribution -1.465 0.253 0.918 1.747 sum -3.648 3.797 -16.308 17.137 Atomic orbital electron populations 1.30258 1.26623 1.11955 1.11337 1.03860 0.77068 0.73980 0.73235 1.93555 1.77499 1.36983 1.86507 1.93554 1.77381 1.61960 1.61257 1.31069 1.34704 1.02911 1.22163 1.23551 0.95141 0.95098 0.93051 1.77642 1.22744 0.98610 1.10552 1.49581 1.48989 1.04579 1.09588 1.22358 1.01775 1.01328 0.74169 1.19439 0.99866 0.82689 1.00106 0.87632 1.28574 0.93184 0.94729 0.91425 1.81003 1.08703 1.12773 1.10271 1.19206 0.98886 0.97699 0.84834 1.21082 1.17159 1.26064 0.92420 0.92368 1.24939 0.95744 0.94925 0.98207 1.69930 1.35232 1.33994 1.13631 0.86498 0.81168 0.79468 0.80740 1.19663 1.20836 1.20726 1.22558 0.91423 0.97719 0.86276 0.85154 0.85527 0.85133 0.78933 0.88271 0.85919 0.95102 0.93981 0.92645 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.04 10.80 101.05 1.09 -1.95 16 2 S 2.54 21.35 5.94 -107.50 -0.64 20.71 16 3 O -0.95 -10.63 17.72 -57.54 -1.02 -11.65 16 4 O -0.94 -11.16 17.74 -57.54 -1.02 -12.18 16 5 C -0.81 -8.45 5.83 -40.01 -0.23 -8.68 16 6 C 0.12 1.52 11.74 -17.36 -0.20 1.32 16 7 N -0.28 -4.30 10.88 30.63 0.33 -3.97 16 8 N -0.35 -4.60 3.68 -61.36 -0.23 -4.83 16 9 C 0.12 1.57 5.94 -4.04 -0.02 1.55 16 10 C 0.00 0.02 2.42 -93.41 -0.23 -0.20 16 11 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.24 4.84 12.25 -20.74 -0.25 4.58 16 13 N -0.45 -10.10 18.54 42.18 0.78 -9.32 16 14 C 0.03 0.68 4.42 -27.89 -0.12 0.56 16 15 C -0.53 -13.36 8.60 -34.44 -0.30 -13.66 16 16 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.27 13.29 55.43 0.74 -23.53 16 19 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 C 0.17 1.79 11.12 -17.22 -0.19 1.60 16 24 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 25 H 0.13 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.19 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 29 H 0.12 1.08 8.07 -51.93 -0.42 0.66 16 30 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.19 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -36.57 314.30 -5.65 -42.22 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: -3.76 Total: -4.47 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.56 Total: -13.27 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 1.63 Total: -41.64 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -2.04 Total: -23.83 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 21.35 SS G_CDS: -0.64 Total: 20.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -36.57 -5.65 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333893869.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.907 kcal (2) G-P(sol) polarization free energy of solvation -36.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds