Wall clock time and date at job start Tue Mar 31 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42108 * 110.54509 * 2 1 4 4 O 1.42102 * 110.54226 * 223.24974 * 2 1 3 5 5 C 1.76196 * 104.44776 * 111.62450 * 2 1 3 6 6 C 1.39870 * 126.04118 * 89.98134 * 5 2 1 7 7 N 1.30839 * 108.20094 * 179.97438 * 6 5 2 8 8 N 1.40084 * 108.20954 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.03806 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.46909 * 305.02073 * 9 8 7 11 11 H 1.09000 * 109.47140 * 55.00367 * 10 9 8 12 12 C 1.47203 * 109.47436 * 295.00227 * 10 9 8 13 13 N 6.04339 * 69.30674 * 94.25548 * 2 1 3 14 14 C 1.53006 * 109.47164 * 175.00315 * 10 9 8 15 15 C 1.50703 * 109.47131 * 185.00091 * 14 10 9 16 16 H 1.08000 * 119.99891 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99608 * 179.97438 * 15 14 10 18 18 N 1.31515 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99597 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99906 * 19 17 15 21 21 H 1.48495 * 109.47060 * 209.99880 * 19 17 15 22 22 H 1.48498 * 109.47457 * 329.99956 * 19 17 15 23 23 C 1.34950 * 107.92154 * 0.26501 * 8 7 6 24 24 H 1.09004 * 109.47061 * 308.37989 * 1 2 3 25 25 H 1.09004 * 109.46940 * 68.37661 * 1 2 3 26 26 H 1.08997 * 109.46983 * 188.37579 * 1 2 3 27 27 H 1.07999 * 125.89825 * 359.97212 * 6 5 2 28 28 H 1.09001 * 109.47038 * 185.02287 * 9 8 7 29 29 H 1.08994 * 109.47331 * 65.02001 * 9 8 7 30 30 H 1.09004 * 109.46579 * 304.99685 * 14 10 9 31 31 H 1.08992 * 109.47046 * 64.99868 * 14 10 9 32 32 H 0.97000 * 119.99683 * 179.97438 * 18 17 15 33 33 H 1.08005 * 126.12496 * 179.73919 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4586 -1.9739 1.9103 7 7 2.7700 -2.0457 3.1790 8 7 2.7736 -0.7465 3.7031 9 6 3.0722 -0.3770 5.0889 10 6 2.1524 -1.1536 6.0332 11 1 2.2491 -2.2216 5.8377 12 6 0.7577 -0.7385 5.8112 13 7 -0.3215 -0.4195 5.6379 14 6 2.5466 -0.8627 7.4827 15 6 1.7231 -1.7201 8.4089 16 1 0.9921 -2.4044 8.0042 17 6 1.9038 -1.6317 9.7729 18 7 2.7951 -0.7995 10.2656 19 14 0.8826 -2.6940 10.9211 20 1 1.5852 -3.9800 11.1615 21 1 0.6916 -1.9854 12.2120 22 1 -0.4407 -2.9611 10.3025 23 6 2.4483 0.1039 2.7070 24 1 -0.3633 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1497 27 1 2.3743 -2.8090 1.2307 28 1 2.9106 0.6926 5.2225 29 1 4.1110 -0.6184 5.3135 30 1 3.6039 -1.0872 7.6237 31 1 2.3657 0.1890 7.7043 32 1 2.9218 -0.7371 11.2253 33 1 2.3614 1.1773 2.7892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333893870.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:54 Heat of formation + Delta-G solvation = 25.006140 kcal Electronic energy + Delta-G solvation = -19295.696362 eV Core-core repulsion = 16064.774271 eV Total energy + Delta-G solvation = -3230.922091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.39593 -37.12454 -37.04428 -35.98984 -34.48358 -33.13497 -31.25385 -30.53037 -29.61207 -27.23350 -24.42817 -22.20396 -21.91739 -21.20347 -19.00586 -18.03536 -16.89408 -16.60323 -16.34972 -15.86437 -15.65320 -15.41461 -14.68919 -14.42084 -13.69877 -13.45773 -13.43305 -13.30738 -13.17149 -12.76872 -12.34176 -12.20218 -12.12533 -12.06675 -11.79159 -11.62815 -11.28399 -11.17337 -10.96977 -10.74598 -10.65782 -10.45230 -9.92501 -9.67389 -9.46801 -9.19915 -8.59700 -6.24281 -4.28546 0.03520 1.51937 2.24726 2.31550 2.93944 3.20570 3.26154 3.28375 3.32277 3.37538 3.84366 3.95837 4.27866 4.32780 4.46240 4.58598 4.61271 4.81259 5.00652 5.05025 5.14444 5.35547 5.41276 5.44904 5.55258 5.98976 6.13161 6.33559 6.70831 7.18007 7.25942 7.39386 7.69671 8.03534 8.12981 8.74955 9.38197 10.86452 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038787 B = 0.003469 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.721211 B = 8068.822796 C = 8198.065326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.541 3.459 3 O -0.948 6.948 4 O -0.944 6.944 5 C -0.809 4.809 6 C 0.123 3.877 7 N -0.280 5.280 8 N -0.350 5.350 9 C 0.127 3.873 10 C -0.003 4.003 11 H 0.119 0.881 12 C 0.236 3.764 13 N -0.462 5.462 14 C 0.034 3.966 15 C -0.531 4.531 16 H 0.057 0.943 17 C 0.065 3.935 18 N -0.890 5.890 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.175 3.825 24 H 0.129 0.871 25 H 0.127 0.873 26 H 0.130 0.870 27 H 0.196 0.804 28 H 0.108 0.892 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 2.187 -17.601 17.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.718 3.282 3 O -0.945 6.945 4 O -0.941 6.941 5 C -0.908 4.908 6 C -0.066 4.066 7 N -0.098 5.098 8 N -0.126 5.126 9 C 0.006 3.994 10 C -0.025 4.025 11 H 0.137 0.863 12 C -0.081 4.081 13 N -0.139 5.139 14 C -0.005 4.005 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.199 1.199 23 C 0.020 3.980 24 H 0.148 0.852 25 H 0.145 0.855 26 H 0.149 0.851 27 H 0.213 0.787 28 H 0.126 0.874 29 H 0.133 0.867 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.951 2.225 -17.130 17.300 hybrid contribution -0.895 -0.428 1.017 1.421 sum -1.847 1.797 -16.112 16.317 Atomic orbital electron populations 1.30263 1.26637 1.11991 1.11334 1.03862 0.77041 0.74012 0.73245 1.93555 1.77489 1.36996 1.86504 1.93552 1.77375 1.61935 1.61212 1.31064 1.34607 1.03045 1.22084 1.23535 0.95036 0.95048 0.93021 1.77475 1.23167 0.98665 1.10525 1.49516 1.48885 1.04590 1.09597 1.22329 1.01874 1.01081 0.74156 1.19586 0.81677 1.01601 0.99682 0.86347 1.29151 0.95047 0.92642 0.91254 1.81149 1.11942 1.09908 1.10884 1.19204 0.98426 0.98525 0.84349 1.21044 1.21463 1.23179 0.91177 0.92430 1.24934 0.95191 0.95341 0.98298 1.69920 1.33577 1.36109 1.13163 0.86548 0.80683 0.80450 0.80180 1.20306 1.21022 1.19855 1.22531 0.91287 0.97734 0.86442 0.85246 0.85471 0.85119 0.78712 0.87362 0.86716 0.93780 0.95196 0.92577 0.79278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.81 10.80 101.05 1.09 -2.72 16 2 S 2.54 22.98 5.94 -107.50 -0.64 22.35 16 3 O -0.95 -11.32 17.72 -57.54 -1.02 -12.34 16 4 O -0.94 -11.26 17.75 -57.54 -1.02 -12.29 16 5 C -0.81 -8.85 5.83 -40.01 -0.23 -9.09 16 6 C 0.12 1.48 11.75 -17.36 -0.20 1.27 16 7 N -0.28 -4.00 12.34 30.62 0.38 -3.62 16 8 N -0.35 -4.60 3.38 -61.37 -0.21 -4.81 16 9 C 0.13 1.60 5.87 -4.05 -0.02 1.58 16 10 C 0.00 -0.05 2.30 -93.40 -0.21 -0.27 16 11 H 0.12 2.04 8.05 -51.93 -0.42 1.62 16 12 C 0.24 4.49 13.68 -20.67 -0.28 4.21 16 13 N -0.46 -9.53 18.55 42.26 0.78 -8.75 16 14 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 15 C -0.53 -13.44 8.60 -34.44 -0.30 -13.74 16 16 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 17 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 19 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 22 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 23 C 0.17 1.98 11.12 -17.22 -0.19 1.79 16 24 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 25 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.20 1.75 8.06 -52.49 -0.42 1.33 16 28 H 0.11 1.12 8.07 -51.93 -0.42 0.70 16 29 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.19 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 316.63 15.07 4.77 4.77 Total: -1.00 -35.23 316.63 -5.57 -40.80 By element: Atomic # 1 Polarization: 0.38 SS G_CDS: -3.75 Total: -3.37 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -0.58 Total: -14.76 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: 1.69 Total: -40.77 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -2.04 Total: -24.63 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 22.98 SS G_CDS: -0.64 Total: 22.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.23 -5.57 -40.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333893870.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.804 kcal (2) G-P(sol) polarization free energy of solvation -35.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds