Wall clock time and date at job start Tue Mar 31 2020 05:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42108 * 110.54509 * 2 1 4 4 O 1.42102 * 110.54226 * 223.24974 * 2 1 3 5 5 C 1.76196 * 104.44776 * 111.62450 * 2 1 3 6 6 C 1.39870 * 126.04118 * 89.98134 * 5 2 1 7 7 N 1.30839 * 108.20094 * 179.97438 * 6 5 2 8 8 N 1.40084 * 108.20954 * 359.97438 * 7 6 5 9 9 C 1.46495 * 126.03806 * 180.02562 * 8 7 6 10 10 C 1.52997 * 109.46909 * 305.02073 * 9 8 7 11 11 H 1.09000 * 109.47140 * 55.00367 * 10 9 8 12 12 C 1.47203 * 109.47436 * 295.00227 * 10 9 8 13 13 N 6.04339 * 69.30674 * 94.25548 * 2 1 3 14 14 C 1.53006 * 109.47164 * 175.00315 * 10 9 8 15 15 C 1.50703 * 109.47131 * 185.00091 * 14 10 9 16 16 H 1.08000 * 119.99891 * 0.02562 * 15 14 10 17 17 C 1.37877 * 119.99608 * 179.97438 * 15 14 10 18 18 N 1.31515 * 120.00174 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99597 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47179 * 89.99906 * 19 17 15 21 21 H 1.48495 * 109.47060 * 209.99880 * 19 17 15 22 22 H 1.48498 * 109.47457 * 329.99956 * 19 17 15 23 23 C 1.34950 * 107.92154 * 0.26501 * 8 7 6 24 24 H 1.09004 * 109.47061 * 308.37989 * 1 2 3 25 25 H 1.09004 * 109.46940 * 68.37661 * 1 2 3 26 26 H 1.08997 * 109.46983 * 188.37579 * 1 2 3 27 27 H 1.07999 * 125.89825 * 359.97212 * 6 5 2 28 28 H 1.09001 * 109.47038 * 185.02287 * 9 8 7 29 29 H 1.08994 * 109.47331 * 65.02001 * 9 8 7 30 30 H 1.09004 * 109.46579 * 304.99685 * 14 10 9 31 31 H 1.08992 * 109.47046 * 64.99868 * 14 10 9 32 32 H 0.97000 * 119.99683 * 179.97438 * 18 17 15 33 33 H 1.08005 * 126.12496 * 179.73919 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3126 -0.9692 -0.9117 5 6 2.2536 -0.6288 1.5862 6 6 2.4586 -1.9739 1.9103 7 7 2.7700 -2.0457 3.1790 8 7 2.7736 -0.7465 3.7031 9 6 3.0722 -0.3770 5.0889 10 6 2.1524 -1.1536 6.0332 11 1 2.2491 -2.2216 5.8377 12 6 0.7577 -0.7385 5.8112 13 7 -0.3215 -0.4195 5.6379 14 6 2.5466 -0.8627 7.4827 15 6 1.7231 -1.7201 8.4089 16 1 0.9921 -2.4044 8.0042 17 6 1.9038 -1.6317 9.7729 18 7 2.7951 -0.7995 10.2656 19 14 0.8826 -2.6940 10.9211 20 1 1.5852 -3.9800 11.1615 21 1 0.6916 -1.9854 12.2120 22 1 -0.4407 -2.9611 10.3025 23 6 2.4483 0.1039 2.7070 24 1 -0.3633 0.6381 0.8056 25 1 -0.3633 0.3787 -0.9554 26 1 -0.3633 -1.0167 0.1497 27 1 2.3743 -2.8090 1.2307 28 1 2.9106 0.6926 5.2225 29 1 4.1110 -0.6184 5.3135 30 1 3.6039 -1.0872 7.6237 31 1 2.3657 0.1890 7.7043 32 1 2.9218 -0.7371 11.2253 33 1 2.3614 1.1773 2.7892 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333893870.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:54 Heat of formation + Delta-G solvation = -0.596193 kcal Electronic energy + Delta-G solvation = -19296.806563 eV Core-core repulsion = 16064.774271 eV Total energy + Delta-G solvation = -3232.032292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.30715 -38.49874 -37.93945 -36.81524 -35.96770 -34.78805 -32.61788 -31.44828 -30.14839 -28.73188 -25.82967 -23.78219 -22.89268 -22.16396 -19.84212 -19.01589 -18.38859 -18.17129 -17.12241 -16.87687 -16.56273 -16.48307 -16.27791 -15.50227 -14.98187 -14.74904 -14.37182 -14.09927 -13.95845 -13.91697 -13.83066 -13.53457 -13.20704 -13.04385 -13.00593 -12.92315 -12.81846 -12.59528 -12.47296 -12.13098 -11.86162 -11.66621 -11.43174 -11.33613 -10.62803 -10.58289 -10.15432 -8.24533 -6.32313 -0.65020 0.64081 1.34559 1.37730 1.40128 1.41167 1.48670 1.77004 1.83644 2.20881 2.38303 2.99051 3.12879 3.17879 3.20046 3.59750 3.79382 3.91213 4.06557 4.18756 4.24740 4.35904 4.54642 4.60157 4.61840 4.77777 5.03806 5.39074 5.44276 5.53422 5.71868 5.80629 6.13449 6.47835 6.60516 6.80028 7.36619 8.85963 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.038787 B = 0.003469 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.721211 B = 8068.822796 C = 8198.065326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.634 4.634 2 S 2.558 3.442 3 O -0.979 6.979 4 O -0.976 6.976 5 C -0.812 4.812 6 C 0.119 3.881 7 N -0.318 5.318 8 N -0.362 5.362 9 C 0.132 3.868 10 C 0.010 3.990 11 H 0.115 0.885 12 C 0.246 3.754 13 N -0.491 5.491 14 C 0.040 3.960 15 C -0.543 4.543 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.918 5.918 19 Si 0.945 3.055 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.278 1.278 23 C 0.169 3.831 24 H 0.141 0.859 25 H 0.151 0.849 26 H 0.145 0.855 27 H 0.217 0.783 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.044 0.956 31 H 0.017 0.983 32 H 0.266 0.734 33 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 2.380 -18.596 18.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.787 4.787 2 S 2.738 3.262 3 O -0.977 6.977 4 O -0.973 6.973 5 C -0.909 4.909 6 C -0.071 4.071 7 N -0.137 5.137 8 N -0.138 5.138 9 C 0.011 3.989 10 C -0.012 4.012 11 H 0.133 0.867 12 C -0.071 4.071 13 N -0.168 5.168 14 C 0.001 3.999 15 C -0.581 4.581 16 H 0.067 0.933 17 C -0.182 4.182 18 N -0.558 5.558 19 Si 0.771 3.229 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.203 1.203 23 C 0.015 3.985 24 H 0.159 0.841 25 H 0.170 0.830 26 H 0.163 0.837 27 H 0.233 0.767 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.623 2.405 -18.124 18.355 hybrid contribution -0.742 -0.496 1.249 1.535 sum -2.365 1.909 -16.876 17.147 Atomic orbital electron populations 1.30101 1.21802 1.13525 1.13306 1.03351 0.78492 0.72522 0.71875 1.93512 1.79436 1.38156 1.86563 1.93508 1.79348 1.62597 1.61890 1.31347 1.34237 1.02628 1.22716 1.24011 0.94004 0.96304 0.92732 1.77424 1.24807 0.99738 1.11744 1.49461 1.49945 1.04648 1.09793 1.22282 1.01389 1.01759 0.73440 1.19407 0.81381 1.02131 0.98324 0.86701 1.29539 0.95286 0.91826 0.90412 1.81142 1.12768 1.11016 1.11866 1.19006 0.97710 0.96870 0.86318 1.21457 1.21374 1.23179 0.92080 0.93296 1.25608 0.96242 0.96504 0.99835 1.69993 1.34904 1.37459 1.13410 0.85748 0.79176 0.79439 0.78540 1.19422 1.20777 1.20302 1.23112 0.90311 0.98978 0.86084 0.84078 0.83038 0.83671 0.76679 0.84827 0.85108 0.93787 0.96415 0.92545 0.76523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -5.27 10.80 113.37 1.22 -4.04 16 2 S 2.56 41.87 5.94 -56.49 -0.34 41.53 16 3 O -0.98 -22.02 17.72 -127.65 -2.26 -24.28 16 4 O -0.98 -22.22 17.75 -127.65 -2.27 -24.48 16 5 C -0.81 -16.47 5.83 21.99 0.13 -16.34 16 6 C 0.12 2.70 11.75 85.24 1.00 3.70 16 7 N -0.32 -8.80 12.34 -57.02 -0.70 -9.51 16 8 N -0.36 -8.97 3.38 -348.07 -1.18 -10.15 16 9 C 0.13 3.13 5.87 86.38 0.51 3.63 16 10 C 0.01 0.32 2.30 -12.60 -0.03 0.29 16 11 H 0.12 3.90 8.05 -2.39 -0.02 3.88 16 12 C 0.25 9.15 13.68 89.41 1.22 10.37 16 13 N -0.49 -19.83 18.55 20.04 0.37 -19.46 16 14 C 0.04 1.67 4.42 29.85 0.13 1.80 16 15 C -0.54 -27.47 8.60 25.60 0.22 -27.25 16 16 H 0.05 2.50 7.59 -2.91 -0.02 2.48 16 17 C 0.02 0.94 5.46 84.65 0.46 1.40 16 18 N -0.92 -50.22 13.29 21.45 0.28 -49.94 16 19 Si 0.94 42.16 29.54 68.60 2.03 44.18 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C 0.17 3.50 11.12 83.54 0.93 4.43 16 24 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.14 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.22 3.62 8.06 -2.91 -0.02 3.59 16 28 H 0.13 2.45 8.07 -2.39 -0.02 2.43 16 29 H 0.13 2.66 8.14 -2.39 -0.02 2.65 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 33 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -75.11 316.63 2.86 -72.25 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 1.13 Total: 1.86 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 5.80 Total: -22.01 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -1.22 Total: -89.05 kcal Atomic # 8 Polarization: -44.24 SS G_CDS: -4.53 Total: -48.76 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 41.87 SS G_CDS: -0.34 Total: 41.53 kcal Total: -75.11 2.86 -72.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333893870.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.650 kcal (2) G-P(sol) polarization free energy of solvation -75.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds