Wall clock time and date at job start Tue Mar 31 2020 05:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38461 * 120.00058 * 2 1 4 4 N 1.29446 * 125.18864 * 179.97438 * 3 2 1 5 5 C 1.33623 * 116.89418 * 180.02562 * 4 3 2 6 6 C 1.47171 * 122.47553 * 180.02562 * 5 4 3 7 7 O 1.21648 * 119.99813 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00037 * 0.02768 * 6 5 4 9 9 C 1.47571 * 134.49423 * 180.02562 * 8 6 5 10 10 C 1.53946 * 86.11996 * 155.35733 * 9 8 6 11 11 O 1.42904 * 113.73883 * 269.15369 * 10 9 8 12 12 C 1.50701 * 113.74318 * 137.95533 * 10 9 8 13 13 H 1.08002 * 119.99761 * 1.91855 * 12 10 9 14 14 C 1.37871 * 119.99694 * 182.20418 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.47807 * 134.45550 * 359.86399 * 8 6 5 21 21 C 1.35050 * 115.04777 * 0.27498 * 5 4 3 22 22 S 1.76048 * 125.18672 * 0.03824 * 3 2 1 23 23 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47130 * 60.00198 * 1 2 3 26 26 H 0.97000 * 120.00147 * 179.97438 * 2 1 3 27 27 H 1.09004 * 113.77444 * 41.05348 * 9 8 6 28 28 H 1.09004 * 113.87147 * 269.67091 * 9 8 6 29 29 H 0.96703 * 113.99734 * 178.06891 * 11 10 9 30 30 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 31 31 H 1.08997 * 113.77160 * 90.37973 * 20 8 6 32 32 H 1.09008 * 113.84085 * 318.92046 * 20 8 6 33 33 H 1.07997 * 125.87288 * 179.73176 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1991 0.0000 4 7 3.4465 1.3162 0.0005 5 6 3.9407 2.5576 0.0009 6 6 5.3865 2.8326 0.0009 7 8 5.7871 3.9812 0.0018 8 7 6.2666 1.8119 -0.0001 9 6 7.7392 1.7160 0.0001 10 6 7.5445 0.3290 0.6388 11 8 7.5261 0.3510 2.0676 12 6 8.4586 -0.7305 0.0794 13 1 9.1862 -0.4720 -0.6757 14 6 8.3621 -2.0308 0.5273 15 7 7.4761 -2.3456 1.4468 16 14 9.4900 -3.3456 -0.1717 17 1 10.9038 -2.9781 0.0954 18 1 9.1880 -4.6497 0.4712 19 1 9.2751 -3.4541 -1.6371 20 6 6.1436 0.3390 0.0012 21 6 3.0154 3.5414 0.0067 22 16 1.4185 2.7971 0.0010 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.9500 -0.8400 0.0004 27 1 8.2265 2.4374 0.6561 28 1 8.1792 1.6828 -0.9967 29 1 7.3745 -0.5140 2.4724 30 1 7.4079 -3.2605 1.7617 31 1 6.1116 -0.1001 -0.9959 32 1 5.3592 -0.0371 0.6581 33 1 3.2193 4.6019 0.0121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334918620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:08 Heat of formation + Delta-G solvation = 9.772079 kcal Electronic energy + Delta-G solvation = -19988.757972 eV Core-core repulsion = 16757.175282 eV Total energy + Delta-G solvation = -3231.582690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93602 -38.65496 -37.16244 -35.71164 -33.84102 -32.15052 -29.94155 -28.68774 -26.50088 -25.70087 -25.08849 -23.70036 -21.58211 -19.67260 -18.82895 -17.73818 -17.16887 -16.72453 -15.73104 -15.47817 -15.29066 -15.08126 -14.78416 -14.49249 -14.05077 -13.45756 -13.18270 -12.93074 -12.71477 -12.45743 -12.30859 -11.92473 -11.68780 -11.48313 -11.00720 -10.94890 -10.48892 -10.41062 -10.21350 -9.78781 -9.46756 -9.20049 -9.15466 -8.70113 -8.28445 -7.88192 -7.64115 -6.32216 -4.42039 0.89889 1.10310 1.68939 2.50214 2.92100 3.19913 3.25086 3.27922 3.71593 3.93303 4.23828 4.64826 4.86166 4.92632 5.06623 5.31638 5.39539 5.53594 5.70890 5.92213 6.15709 6.27876 6.46785 6.49587 6.71425 6.76765 6.98338 7.18995 7.23555 7.69453 7.90233 7.90960 8.51403 8.59971 8.81701 9.28237 9.51002 10.74468 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.005182 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.526494 B = 5402.121314 C = 6467.948112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.698 5.698 3 C 0.344 3.656 4 N -0.512 5.512 5 C 0.078 3.922 6 C 0.598 3.402 7 O -0.562 6.562 8 N -0.611 5.611 9 C 0.111 3.889 10 C 0.233 3.767 11 O -0.573 6.573 12 C -0.536 4.536 13 H 0.070 0.930 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.100 3.900 21 C -0.220 4.220 22 S 0.050 5.950 23 H 0.089 0.911 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.418 0.582 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.391 0.609 30 H 0.272 0.728 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 2.254 -3.063 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.339 5.339 3 C -0.030 4.030 4 N -0.237 5.237 5 C -0.053 4.053 6 C 0.384 3.616 7 O -0.443 6.443 8 N -0.342 5.342 9 C -0.010 4.010 10 C 0.192 3.808 11 O -0.384 6.384 12 C -0.574 4.574 13 H 0.088 0.912 14 C -0.130 4.130 15 N -0.537 5.537 16 Si 0.733 3.267 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.022 4.022 21 C -0.363 4.363 22 S 0.296 5.704 23 H 0.107 0.893 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.256 0.744 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.245 0.755 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -15.481 3.383 -3.040 16.135 hybrid contribution 1.239 -1.544 -0.306 2.004 sum -14.241 1.839 -3.346 14.744 Atomic orbital electron populations 1.21736 0.78026 1.03824 1.01791 1.43624 1.05725 1.03749 1.80846 1.24285 0.89769 0.91065 0.97854 1.66787 1.08475 1.23301 1.25174 1.20031 0.95648 0.86285 1.03352 1.16794 0.83136 0.84089 0.77587 1.90744 1.79085 1.20493 1.53969 1.50055 1.07828 1.08148 1.68126 1.23515 0.78951 0.98377 1.00195 1.19923 0.90545 0.90099 0.80272 1.86053 1.95079 1.38139 1.19169 1.21454 1.19845 0.92749 1.23358 0.91183 1.25048 0.94912 0.98663 0.94357 1.69414 1.34421 1.20443 1.29425 0.86420 0.80968 0.80022 0.79250 1.19890 1.21076 1.19967 1.24234 1.01733 0.75397 1.00867 1.26569 0.92036 1.04378 1.13363 1.84671 1.09832 1.00123 1.75764 0.89266 0.92229 0.92268 0.74364 0.91020 0.89465 0.75470 0.91782 0.90595 0.90230 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.62 59.85 0.64 1.25 16 2 N -0.70 -7.65 5.86 -67.81 -0.40 -8.04 16 3 C 0.34 5.01 8.42 -88.02 -0.74 4.27 16 4 N -0.51 -9.41 8.50 -10.59 -0.09 -9.50 16 5 C 0.08 1.52 6.66 -84.59 -0.56 0.95 16 6 C 0.60 13.53 8.02 -12.63 -0.10 13.43 16 7 O -0.56 -13.60 17.39 5.24 0.09 -13.50 16 8 N -0.61 -14.12 3.61 -179.50 -0.65 -14.77 16 9 C 0.11 2.55 8.23 -2.97 -0.02 2.53 16 10 C 0.23 5.82 1.40 -90.86 -0.13 5.69 16 11 O -0.57 -15.28 13.48 -35.23 -0.48 -15.75 16 12 C -0.54 -13.75 8.61 -34.44 -0.30 -14.05 16 13 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 14 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 15 N -0.90 -23.06 11.21 55.43 0.62 -22.44 16 16 Si 0.91 19.69 29.54 -169.99 -5.02 14.66 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 C 0.10 2.33 7.11 -2.85 -0.02 2.31 16 21 C -0.22 -3.52 10.83 29.60 0.32 -3.20 16 22 S 0.05 0.62 22.62 -107.50 -2.43 -1.81 16 23 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.42 4.47 8.95 -40.82 -0.37 4.11 16 27 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 28 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 29 H 0.39 10.46 6.61 45.56 0.30 10.76 16 30 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 31 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 32 H 0.08 1.92 7.30 -51.92 -0.38 1.54 16 33 H 0.19 2.70 8.01 -52.49 -0.42 2.28 16 LS Contribution 304.57 15.07 4.59 4.59 Total: -1.00 -30.58 304.57 -7.71 -38.30 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -2.94 Total: 13.33 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: -1.01 Total: 14.93 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.51 Total: -54.74 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.38 Total: -29.26 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.43 Total: -1.81 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.58 -7.71 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334918620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.068 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds