Wall clock time and date at job start Tue Mar 31 2020 05:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38461 * 120.00058 * 2 1 4 4 N 1.29446 * 125.18864 * 179.97438 * 3 2 1 5 5 C 1.33623 * 116.89418 * 180.02562 * 4 3 2 6 6 C 1.47171 * 122.47553 * 180.02562 * 5 4 3 7 7 O 1.21648 * 119.99813 * 180.02562 * 6 5 4 8 8 N 1.34781 * 120.00037 * 0.02768 * 6 5 4 9 9 C 1.47571 * 134.49423 * 180.02562 * 8 6 5 10 10 C 1.53946 * 86.11996 * 155.35733 * 9 8 6 11 11 O 1.42904 * 113.73883 * 269.15369 * 10 9 8 12 12 C 1.50701 * 113.74318 * 137.95533 * 10 9 8 13 13 H 1.08002 * 119.99761 * 1.91855 * 12 10 9 14 14 C 1.37871 * 119.99694 * 182.20418 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48504 * 109.47266 * 60.00049 * 16 14 12 18 18 H 1.48504 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47383 * 299.99456 * 16 14 12 20 20 C 1.47807 * 134.45550 * 359.86399 * 8 6 5 21 21 C 1.35050 * 115.04777 * 0.27498 * 5 4 3 22 22 S 1.76048 * 125.18672 * 0.03824 * 3 2 1 23 23 H 1.08998 * 109.47039 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 299.99892 * 1 2 3 25 25 H 1.08992 * 109.47130 * 60.00198 * 1 2 3 26 26 H 0.97000 * 120.00147 * 179.97438 * 2 1 3 27 27 H 1.09004 * 113.77444 * 41.05348 * 9 8 6 28 28 H 1.09004 * 113.87147 * 269.67091 * 9 8 6 29 29 H 0.96703 * 113.99734 * 178.06891 * 11 10 9 30 30 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 31 31 H 1.08997 * 113.77160 * 90.37973 * 20 8 6 32 32 H 1.09008 * 113.84085 * 318.92046 * 20 8 6 33 33 H 1.07997 * 125.87288 * 179.73176 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1573 1.1991 0.0000 4 7 3.4465 1.3162 0.0005 5 6 3.9407 2.5576 0.0009 6 6 5.3865 2.8326 0.0009 7 8 5.7871 3.9812 0.0018 8 7 6.2666 1.8119 -0.0001 9 6 7.7392 1.7160 0.0001 10 6 7.5445 0.3290 0.6388 11 8 7.5261 0.3510 2.0676 12 6 8.4586 -0.7305 0.0794 13 1 9.1862 -0.4720 -0.6757 14 6 8.3621 -2.0308 0.5273 15 7 7.4761 -2.3456 1.4468 16 14 9.4900 -3.3456 -0.1717 17 1 10.9038 -2.9781 0.0954 18 1 9.1880 -4.6497 0.4712 19 1 9.2751 -3.4541 -1.6371 20 6 6.1436 0.3390 0.0012 21 6 3.0154 3.5414 0.0067 22 16 1.4185 2.7971 0.0010 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.9500 -0.8400 0.0004 27 1 8.2265 2.4374 0.6561 28 1 8.1792 1.6828 -0.9967 29 1 7.3745 -0.5140 2.4724 30 1 7.4079 -3.2605 1.7617 31 1 6.1116 -0.1001 -0.9959 32 1 5.3592 -0.0371 0.6581 33 1 3.2193 4.6019 0.0121 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334918620.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:07 Heat of formation + Delta-G solvation = -13.801926 kcal Electronic energy + Delta-G solvation = -19989.780217 eV Core-core repulsion = 16757.175282 eV Total energy + Delta-G solvation = -3232.604935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49997 -40.16436 -38.86331 -36.68594 -35.80498 -34.14055 -31.20714 -30.40788 -27.68504 -27.14271 -26.95206 -25.03040 -22.92112 -21.35399 -20.24152 -19.50517 -18.81700 -17.99497 -17.31746 -16.97279 -16.79194 -16.66365 -15.96568 -15.86855 -15.76525 -15.01099 -14.47211 -14.38594 -14.13421 -13.95752 -13.71726 -13.39698 -13.29249 -12.98280 -12.74810 -12.71091 -12.23921 -12.19832 -11.53666 -11.45054 -11.06824 -10.74957 -10.63505 -10.23164 -10.17034 -9.60847 -8.80525 -8.24008 -6.41480 -0.34042 0.02815 0.49086 1.12105 1.48889 1.50370 1.58050 1.92794 2.11037 2.36767 2.43160 2.97859 3.34808 3.72818 4.04235 4.23887 4.32364 4.34922 4.45478 4.57154 4.59571 4.70412 4.83983 4.85899 4.99408 5.10808 5.26498 5.62424 5.73784 5.94249 6.24255 6.63281 6.72791 6.76709 7.12331 7.31319 7.44153 8.82265 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.005182 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.526494 B = 5402.121314 C = 6467.948112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.691 5.691 3 C 0.329 3.671 4 N -0.556 5.556 5 C 0.044 3.956 6 C 0.590 3.410 7 O -0.588 6.588 8 N -0.618 5.618 9 C 0.111 3.889 10 C 0.217 3.783 11 O -0.586 6.586 12 C -0.558 4.558 13 H 0.073 0.927 14 C 0.033 3.967 15 N -0.915 5.915 16 Si 0.970 3.030 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.268 1.268 20 C 0.122 3.878 21 C -0.225 4.225 22 S 0.149 5.851 23 H 0.117 0.883 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.417 0.583 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.387 0.613 30 H 0.275 0.725 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.652 1.596 -3.772 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.331 5.331 3 C -0.045 4.045 4 N -0.283 5.283 5 C -0.088 4.088 6 C 0.379 3.621 7 O -0.471 6.471 8 N -0.348 5.348 9 C -0.011 4.011 10 C 0.176 3.824 11 O -0.398 6.398 12 C -0.596 4.596 13 H 0.091 0.909 14 C -0.168 4.168 15 N -0.555 5.555 16 Si 0.795 3.205 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.001 4.001 21 C -0.369 4.369 22 S 0.396 5.604 23 H 0.135 0.865 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.255 0.745 27 H 0.083 0.917 28 H 0.124 0.876 29 H 0.240 0.760 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -17.489 2.712 -3.753 18.092 hybrid contribution 1.669 -1.317 -0.058 2.127 sum -15.821 1.394 -3.812 16.333 Atomic orbital electron populations 1.22095 0.75327 1.06145 1.02601 1.44001 1.07275 1.02681 1.79146 1.24652 0.89570 0.93278 0.97007 1.66683 1.10752 1.23254 1.27630 1.19633 0.94158 0.87899 1.07062 1.17375 0.84734 0.83502 0.76527 1.90699 1.80064 1.21199 1.55158 1.50080 1.07852 1.08191 1.68719 1.23538 0.79532 0.97143 1.00846 1.20182 0.91614 0.91212 0.79438 1.86039 1.95243 1.37956 1.20540 1.21674 1.20462 0.93455 1.23970 0.90896 1.25765 0.96074 1.00378 0.94536 1.69488 1.35195 1.20962 1.29904 0.85422 0.78884 0.77447 0.78736 1.19893 1.20642 1.19333 1.23893 1.00243 0.75679 1.00262 1.26896 0.94254 1.04629 1.11138 1.84258 1.05501 0.96705 1.73930 0.86452 0.91414 0.91165 0.74461 0.91713 0.87608 0.75952 0.91503 0.90526 0.91464 0.79001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.62 127.77 1.36 2.18 16 2 N -0.69 -13.70 5.86 -368.44 -2.16 -15.86 16 3 C 0.33 9.06 8.42 179.44 1.51 10.57 16 4 N -0.56 -20.40 8.50 -187.41 -1.59 -22.00 16 5 C 0.04 1.71 6.66 40.48 0.27 1.98 16 6 C 0.59 27.40 8.02 86.59 0.69 28.09 16 7 O -0.59 -29.16 17.39 -4.18 -0.07 -29.24 16 8 N -0.62 -29.31 3.61 -843.87 -3.05 -32.36 16 9 C 0.11 5.22 8.23 86.49 0.71 5.93 16 10 C 0.22 11.04 1.40 -10.89 -0.02 11.03 16 11 O -0.59 -32.19 13.48 -148.98 -2.01 -34.20 16 12 C -0.56 -28.80 8.61 25.60 0.22 -28.58 16 13 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 14 C 0.03 1.67 5.40 84.65 0.46 2.13 16 15 N -0.92 -47.24 11.21 21.45 0.24 -47.00 16 16 Si 0.97 39.95 29.54 68.60 2.03 41.98 16 17 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.28 -11.30 7.11 99.48 0.71 -10.60 16 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 20 C 0.12 5.81 7.11 86.43 0.61 6.43 16 21 C -0.22 -6.95 10.83 67.09 0.73 -6.22 16 22 S 0.15 3.27 22.62 -56.49 -1.28 2.00 16 23 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.42 8.36 8.95 -92.71 -0.83 7.53 16 27 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 28 H 0.11 4.47 8.09 -2.39 -0.02 4.45 16 29 H 0.39 21.32 6.61 -74.06 -0.49 20.84 16 30 H 0.28 13.41 8.31 -92.71 -0.77 12.64 16 31 H 0.08 3.59 8.09 -2.39 -0.02 3.57 16 32 H 0.07 3.35 7.30 -2.38 -0.02 3.34 16 33 H 0.19 5.44 8.01 -2.91 -0.02 5.41 16 Total: -1.00 -66.63 304.57 -1.50 -68.12 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: -0.15 Total: 35.02 kcal Atomic # 6 Polarization: 26.99 SS G_CDS: 6.55 Total: 33.54 kcal Atomic # 7 Polarization: -110.66 SS G_CDS: -6.56 Total: -117.22 kcal Atomic # 8 Polarization: -61.35 SS G_CDS: -2.08 Total: -63.43 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.28 Total: 2.00 kcal Total: -66.63 -1.50 -68.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334918620.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.319 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds