Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30134 * 119.99466 * 2 1 4 4 N 1.40101 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.46506 * 120.00104 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46566 * 329.99513 * 5 4 3 7 7 C 1.52997 * 109.47289 * 89.99778 * 5 4 3 8 8 C 1.50697 * 109.47015 * 210.00236 * 5 4 3 9 9 H 1.07998 * 120.00039 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99815 * 179.97438 * 8 5 4 11 11 N 1.31508 * 119.99915 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99777 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46954 * 59.99790 * 12 10 8 14 14 H 1.48496 * 109.47069 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47158 * 300.00368 * 12 10 8 16 16 C 1.46503 * 120.00142 * 179.97438 * 2 1 3 17 17 N 1.31020 * 125.28466 * 0.02673 * 16 2 1 18 18 C 1.30282 * 117.32167 * 179.97438 * 17 16 2 19 19 C 1.36949 * 115.30210 * 359.97438 * 18 17 16 20 20 C 1.46232 * 126.00240 * 180.02562 * 19 18 17 21 21 O 1.21660 * 119.99567 * 359.97438 * 20 19 18 22 22 O 1.34928 * 119.99923 * 180.02562 * 20 19 18 23 23 S 1.76119 * 125.28613 * 179.71681 * 16 2 1 24 24 H 1.08998 * 109.46828 * 90.00476 * 1 2 3 25 25 H 1.09007 * 109.46594 * 209.99809 * 1 2 3 26 26 H 1.08996 * 109.47003 * 329.99964 * 1 2 3 27 27 H 0.96995 * 119.99712 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 29 29 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 30 30 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 31 31 H 0.97001 * 119.99839 * 180.02562 * 11 10 8 32 32 H 1.08002 * 122.34965 * 179.97438 * 18 17 16 33 33 H 0.96696 * 114.00089 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1577 1.1271 0.0000 4 7 1.4571 2.3403 -0.0005 5 6 2.1896 3.6092 -0.0011 6 1 3.1419 3.4790 0.5129 7 6 2.4446 4.0502 -1.4438 8 6 1.3751 4.6596 0.7089 9 1 0.4084 4.4075 1.1191 10 6 1.8642 5.9426 0.8347 11 7 3.0415 6.2495 0.3356 12 14 0.8542 7.2450 1.7142 13 1 0.6056 6.8168 3.1143 14 1 1.5967 8.5310 1.7137 15 1 -0.4429 7.4225 1.0132 16 6 2.2396 -1.2687 0.0006 17 7 1.6919 -2.4589 0.0006 18 6 2.4933 -3.4861 0.0006 19 6 3.8295 -3.1859 0.0001 20 6 4.9275 -4.1517 -0.0006 21 8 4.6883 -5.3445 -0.0001 22 8 6.2058 -3.7198 -0.0006 23 16 3.9933 -1.4310 -0.0065 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4872 2.3403 -0.0013 28 1 2.9892 4.9944 -1.4442 29 1 1.4922 4.1803 -1.9577 30 1 3.0338 3.2903 -1.9573 31 1 3.3857 7.1520 0.4245 32 1 2.1295 -4.5030 0.0011 33 1 6.8611 -4.4309 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589017034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -6.813691 kcal Electronic energy + Delta-G solvation = -18772.024065 eV Core-core repulsion = 15539.722162 eV Total energy + Delta-G solvation = -3232.301902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39874 -39.31143 -37.31491 -36.23951 -34.60934 -32.16222 -30.58700 -28.90639 -27.45589 -26.01062 -25.31921 -23.21635 -21.45110 -20.16817 -19.21608 -18.61145 -17.90928 -16.64830 -16.51841 -15.92633 -15.66821 -15.21412 -14.65671 -14.54171 -14.28432 -13.62265 -13.42534 -13.22449 -12.72792 -12.30100 -11.94209 -11.83388 -11.50597 -11.47095 -11.16067 -10.97411 -10.96725 -10.68843 -10.40841 -10.35006 -10.14515 -9.67348 -9.62442 -9.24234 -9.03703 -8.63294 -7.13691 -6.27542 -4.37366 -0.13780 1.13719 1.63391 1.83736 2.60341 2.88930 3.13966 3.14981 3.18153 3.23672 3.28721 4.20265 4.36961 4.88061 4.98254 5.05715 5.31917 5.38101 5.63926 5.75015 5.90999 6.10108 6.20531 6.43248 6.68934 6.81699 6.93492 7.36121 7.52477 7.57694 7.58450 7.62781 7.89362 8.05381 8.66264 8.85811 9.30056 10.78340 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032128 B = 0.003307 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.315408 B = 8465.301143 C = 8988.541770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.017 3.983 3 N -0.164 5.164 4 N -0.585 5.585 5 C 0.290 3.710 6 H 0.048 0.952 7 C -0.151 4.151 8 C -0.537 4.537 9 H 0.062 0.938 10 C 0.070 3.930 11 N -0.883 5.883 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.182 3.818 17 N -0.486 5.486 18 C 0.154 3.846 19 C -0.333 4.333 20 C 0.567 3.433 21 O -0.513 6.513 22 O -0.502 6.502 23 S 0.211 5.789 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.379 0.621 28 H 0.094 0.906 29 H 0.029 0.971 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.186 0.814 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -14.669 -1.376 14.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.170 4.170 3 N 0.013 4.987 4 N -0.324 5.324 5 C 0.189 3.811 6 H 0.066 0.934 7 C -0.211 4.211 8 C -0.577 4.577 9 H 0.080 0.920 10 C -0.134 4.134 11 N -0.520 5.520 12 Si 0.732 3.268 13 H -0.201 1.201 14 H -0.210 1.210 15 H -0.201 1.201 16 C -0.087 4.087 17 N -0.203 5.203 18 C -0.010 4.010 19 C -0.457 4.457 20 C 0.410 3.590 21 O -0.404 6.404 22 O -0.312 6.312 23 S 0.470 5.530 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.218 0.782 28 H 0.112 0.888 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.203 0.797 33 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 2.453 -13.132 -1.402 13.432 hybrid contribution -1.490 -0.800 0.429 1.745 sum 0.963 -13.932 -0.973 13.999 Atomic orbital electron populations 1.20806 0.90606 1.03391 1.02769 1.20935 0.93436 0.87706 1.14916 1.74129 1.28751 0.93401 1.02373 1.49412 1.07107 0.99912 1.75964 1.18792 0.93066 0.75635 0.93617 0.93446 1.22218 0.99570 1.02143 0.97140 1.21128 1.04714 0.94323 1.37494 0.92004 1.24845 0.95122 0.98212 0.95216 1.69863 1.17270 1.20689 1.44225 0.86442 0.79952 0.80293 0.80077 1.20057 1.20985 1.20056 1.25488 0.92705 0.93911 0.96626 1.66632 1.36919 0.96893 1.19880 1.22284 0.86286 0.99298 0.93135 1.24720 0.96575 0.97709 1.26737 1.18999 0.81857 0.86088 0.72008 1.90952 1.85126 1.16938 1.47381 1.85063 1.16783 1.43211 1.86159 1.85483 1.06239 0.96896 1.64384 0.91112 0.90089 0.91521 0.78231 0.88758 0.95189 0.96606 0.92270 0.79689 0.72964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.41 36.01 0.34 -1.22 16 2 C 0.02 0.27 7.10 -79.98 -0.57 -0.30 16 3 N -0.16 -3.06 11.26 34.95 0.39 -2.66 16 4 N -0.58 -11.70 5.95 -5.88 -0.04 -11.74 16 5 C 0.29 6.82 3.23 -69.08 -0.22 6.60 16 6 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 7 C -0.15 -3.45 9.29 37.16 0.35 -3.10 16 8 C -0.54 -13.48 8.74 -34.44 -0.30 -13.78 16 9 H 0.06 1.51 7.79 -52.49 -0.41 1.10 16 10 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 11 N -0.88 -23.35 11.32 55.43 0.63 -22.72 16 12 Si 0.91 19.77 29.54 -169.99 -5.02 14.75 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 C 0.18 2.74 7.37 -14.57 -0.11 2.63 16 17 N -0.49 -6.89 10.10 -11.07 -0.11 -7.00 16 18 C 0.15 1.94 11.05 -18.68 -0.21 1.74 16 19 C -0.33 -4.31 6.51 -36.84 -0.24 -4.55 16 20 C 0.57 6.86 8.26 33.94 0.28 7.14 16 21 O -0.51 -7.10 17.60 -19.39 -0.34 -7.44 16 22 O -0.50 -4.75 13.43 -41.12 -0.55 -5.31 16 23 S 0.21 2.93 23.02 -107.50 -2.48 0.45 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 26 H 0.07 0.90 6.36 -51.93 -0.33 0.57 16 27 H 0.38 6.92 6.37 -182.60 -1.16 5.76 16 28 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.19 1.91 8.05 -52.49 -0.42 1.49 16 33 H 0.41 1.84 8.98 45.56 0.41 2.25 16 LS Contribution 312.17 15.07 4.70 4.70 Total: -1.00 -28.38 312.17 -7.05 -35.43 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -3.46 Total: 4.70 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -0.78 Total: -3.16 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: 0.87 Total: -44.12 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: -0.89 Total: -12.74 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.48 Total: 0.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.38 -7.05 -35.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589017034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -28.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds