Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.30134 * 119.99466 * 2 1 4 4 N 1.40101 * 120.00400 * 359.97438 * 3 2 1 5 5 C 1.46506 * 120.00104 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.46566 * 329.99513 * 5 4 3 7 7 C 1.52997 * 109.47289 * 89.99778 * 5 4 3 8 8 C 1.50697 * 109.47015 * 210.00236 * 5 4 3 9 9 H 1.07998 * 120.00039 * 359.97438 * 8 5 4 10 10 C 1.37880 * 119.99815 * 179.97438 * 8 5 4 11 11 N 1.31508 * 119.99915 * 359.97438 * 10 8 5 12 12 Si 1.86805 * 119.99777 * 179.97438 * 10 8 5 13 13 H 1.48506 * 109.46954 * 59.99790 * 12 10 8 14 14 H 1.48496 * 109.47069 * 180.02562 * 12 10 8 15 15 H 1.48506 * 109.47158 * 300.00368 * 12 10 8 16 16 C 1.46503 * 120.00142 * 179.97438 * 2 1 3 17 17 N 1.31020 * 125.28466 * 0.02673 * 16 2 1 18 18 C 1.30282 * 117.32167 * 179.97438 * 17 16 2 19 19 C 1.36949 * 115.30210 * 359.97438 * 18 17 16 20 20 C 1.46232 * 126.00240 * 180.02562 * 19 18 17 21 21 O 1.21660 * 119.99567 * 359.97438 * 20 19 18 22 22 O 1.34928 * 119.99923 * 180.02562 * 20 19 18 23 23 S 1.76119 * 125.28613 * 179.71681 * 16 2 1 24 24 H 1.08998 * 109.46828 * 90.00476 * 1 2 3 25 25 H 1.09007 * 109.46594 * 209.99809 * 1 2 3 26 26 H 1.08996 * 109.47003 * 329.99964 * 1 2 3 27 27 H 0.96995 * 119.99712 * 359.97438 * 4 3 2 28 28 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 29 29 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 30 30 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 31 31 H 0.97001 * 119.99839 * 180.02562 * 11 10 8 32 32 H 1.08002 * 122.34965 * 179.97438 * 18 17 16 33 33 H 0.96696 * 114.00089 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1577 1.1271 0.0000 4 7 1.4571 2.3403 -0.0005 5 6 2.1896 3.6092 -0.0011 6 1 3.1419 3.4790 0.5129 7 6 2.4446 4.0502 -1.4438 8 6 1.3751 4.6596 0.7089 9 1 0.4084 4.4075 1.1191 10 6 1.8642 5.9426 0.8347 11 7 3.0415 6.2495 0.3356 12 14 0.8542 7.2450 1.7142 13 1 0.6056 6.8168 3.1143 14 1 1.5967 8.5310 1.7137 15 1 -0.4429 7.4225 1.0132 16 6 2.2396 -1.2687 0.0006 17 7 1.6919 -2.4589 0.0006 18 6 2.4933 -3.4861 0.0006 19 6 3.8295 -3.1859 0.0001 20 6 4.9275 -4.1517 -0.0006 21 8 4.6883 -5.3445 -0.0001 22 8 6.2058 -3.7198 -0.0006 23 16 3.9933 -1.4310 -0.0065 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 0.4872 2.3403 -0.0013 28 1 2.9892 4.9944 -1.4442 29 1 1.4922 4.1803 -1.9577 30 1 3.0338 3.2903 -1.9573 31 1 3.3857 7.1520 0.4245 32 1 2.1295 -4.5030 0.0011 33 1 6.8611 -4.4309 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589017034.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = -26.126684 kcal Electronic energy + Delta-G solvation = -18772.861539 eV Core-core repulsion = 15539.722162 eV Total energy + Delta-G solvation = -3233.139377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.078 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37958 -40.38489 -38.69897 -37.14765 -36.29353 -33.79241 -31.89619 -30.25129 -28.76350 -27.39905 -27.07175 -24.27792 -22.88130 -21.67241 -20.23343 -19.85366 -19.04860 -18.15013 -17.57382 -17.14700 -16.88996 -16.85996 -15.89170 -15.79481 -15.47827 -14.93853 -14.61643 -14.54643 -14.32144 -13.87200 -13.19330 -13.07005 -12.90708 -12.73905 -12.71297 -12.54491 -12.33504 -12.15736 -12.06152 -11.99145 -11.43679 -11.09638 -10.82443 -10.75533 -10.57215 -10.22218 -8.59546 -8.18365 -6.35145 -1.26568 0.01461 0.53334 0.72449 1.45754 1.46673 1.51176 1.54280 1.78651 2.01254 2.04416 2.43074 3.10799 3.14259 3.74100 3.98321 4.19917 4.39652 4.47585 4.67588 4.76046 4.88972 4.97993 5.07159 5.09932 5.25260 5.35296 5.51760 5.71341 5.83491 6.09439 6.29457 6.42189 6.77988 6.78758 7.35621 7.46914 8.86561 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.032128 B = 0.003307 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.315408 B = 8465.301143 C = 8988.541770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.048 3.952 3 N -0.205 5.205 4 N -0.605 5.605 5 C 0.302 3.698 6 H 0.010 0.990 7 C -0.139 4.139 8 C -0.550 4.550 9 H 0.065 0.935 10 C 0.023 3.977 11 N -0.912 5.912 12 Si 0.967 3.033 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.268 1.268 16 C 0.153 3.847 17 N -0.478 5.478 18 C 0.148 3.852 19 C -0.324 4.324 20 C 0.574 3.426 21 O -0.529 6.529 22 O -0.497 6.497 23 S 0.218 5.782 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.385 0.615 28 H 0.071 0.929 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.267 0.733 32 H 0.211 0.789 33 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.726 -16.361 -1.211 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 N -0.023 5.023 4 N -0.344 5.344 5 C 0.199 3.801 6 H 0.028 0.972 7 C -0.198 4.198 8 C -0.589 4.589 9 H 0.083 0.917 10 C -0.178 4.178 11 N -0.550 5.550 12 Si 0.792 3.208 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.192 1.192 16 C -0.117 4.117 17 N -0.195 5.195 18 C -0.015 4.015 19 C -0.448 4.448 20 C 0.418 3.582 21 O -0.421 6.421 22 O -0.311 6.311 23 S 0.477 5.523 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.225 0.775 28 H 0.089 0.911 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.297 0.703 Dipole moment (debyes) X Y Z Total from point charges 1.864 -14.839 -1.240 15.007 hybrid contribution -1.180 -0.635 0.372 1.391 sum 0.684 -15.474 -0.868 15.513 Atomic orbital electron populations 1.20898 0.88828 1.04031 1.03876 1.21429 0.94874 0.87485 1.10360 1.74108 1.29182 0.93493 1.05562 1.48770 1.06827 0.99456 1.79375 1.18317 0.91560 0.77177 0.93063 0.97202 1.22039 0.99444 1.01058 0.97264 1.21464 1.04973 0.95016 1.37480 0.91661 1.25640 0.96053 1.00187 0.95896 1.69991 1.18649 1.21019 1.45332 0.85470 0.78682 0.77693 0.78935 1.19820 1.20910 1.19240 1.25437 0.93293 0.93918 0.99004 1.66642 1.37374 0.96803 1.18687 1.22665 0.86090 0.99901 0.92827 1.24979 0.97342 0.97314 1.25198 1.18819 0.82419 0.85427 0.71583 1.90958 1.85541 1.17453 1.48176 1.85026 1.16300 1.44346 1.85384 1.85542 1.05650 0.97762 1.63387 0.89656 0.88791 0.91426 0.77503 0.91062 0.94740 0.95949 0.92338 0.77215 0.70283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.95 9.41 71.24 0.67 -2.28 16 2 C 0.05 1.50 7.10 44.97 0.32 1.82 16 3 N -0.20 -7.69 11.26 -43.34 -0.49 -8.17 16 4 N -0.60 -24.61 5.95 -172.52 -1.03 -25.64 16 5 C 0.30 14.65 3.23 44.24 0.14 14.79 16 6 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 7 C -0.14 -6.49 9.29 71.98 0.67 -5.82 16 8 C -0.55 -28.07 8.74 25.60 0.22 -27.85 16 9 H 0.07 3.19 7.79 -2.91 -0.02 3.17 16 10 C 0.02 1.19 5.30 84.66 0.45 1.64 16 11 N -0.91 -49.36 11.32 21.45 0.24 -49.11 16 12 Si 0.97 40.63 29.54 68.60 2.03 42.66 16 13 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 14 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 15 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 16 C 0.15 4.39 7.37 86.97 0.64 5.03 16 17 N -0.48 -12.45 10.10 -188.94 -1.91 -14.35 16 18 C 0.15 3.35 11.05 84.62 0.93 4.29 16 19 C -0.32 -7.63 6.51 24.05 0.16 -7.48 16 20 C 0.57 12.40 8.26 69.90 0.58 12.97 16 21 O -0.53 -13.25 17.60 19.31 0.34 -12.91 16 22 O -0.50 -8.08 13.43 -58.44 -0.79 -8.86 16 23 S 0.22 5.76 23.02 -56.49 -1.30 4.46 16 24 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.09 2.16 7.86 -2.38 -0.02 2.14 16 26 H 0.07 1.74 6.36 -2.39 -0.02 1.73 16 27 H 0.38 14.16 6.37 -213.33 -1.36 12.80 16 28 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 29 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.27 13.76 8.31 -92.71 -0.77 12.98 16 32 H 0.21 3.66 8.05 -2.91 -0.02 3.64 16 33 H 0.44 2.59 8.98 -74.06 -0.67 1.93 16 Total: -1.00 -60.66 312.17 1.04 -59.62 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -0.85 Total: 15.20 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.78 Total: -2.89 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -3.18 Total: -97.28 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.45 Total: -21.77 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 16 Polarization: 5.76 SS G_CDS: -1.30 Total: 4.46 kcal Total: -60.66 1.04 -59.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589017034.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.491 kcal (2) G-P(sol) polarization free energy of solvation -60.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds