Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46823 * 2 1 4 4 C 1.50701 * 109.46968 * 119.99810 * 2 1 3 5 5 H 1.07994 * 119.99686 * 120.00350 * 4 2 1 6 6 C 1.37873 * 120.00094 * 299.99687 * 4 2 1 7 7 N 1.31517 * 120.00278 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46952 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00239 * 8 6 4 11 11 H 1.48501 * 109.46986 * 240.00403 * 8 6 4 12 12 N 1.46900 * 109.46916 * 239.99983 * 2 1 3 13 13 C 1.46901 * 110.99890 * 85.00035 * 12 2 1 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 2 15 15 C 1.50699 * 109.47121 * 274.99849 * 13 12 2 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 154.99793 * 13 12 2 19 19 C 1.38247 * 119.98318 * 39.72803 * 18 13 12 20 20 C 1.38216 * 120.00783 * 179.72813 * 19 18 13 21 21 C 1.38353 * 119.98575 * 0.53885 * 20 19 18 22 22 Cl 1.73604 * 120.01068 * 179.70538 * 21 20 19 23 23 C 1.38352 * 119.97644 * 359.73437 * 21 20 19 24 24 C 1.38213 * 119.98637 * 359.97438 * 23 21 20 25 25 H 1.09013 * 109.47302 * 300.00440 * 1 2 3 26 26 H 1.08996 * 109.47481 * 59.99993 * 1 2 3 27 27 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99796 * 321.04257 * 12 2 1 30 30 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 31 31 H 1.07990 * 119.99475 * 359.97438 * 19 18 13 32 32 H 1.07998 * 120.00409 * 180.27538 * 20 19 18 33 33 H 1.07997 * 120.00496 * 179.97438 * 23 21 20 34 34 H 1.07994 * 119.99607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 2.3648 1.2177 -2.0031 15 6 0.7323 0.2858 -3.0134 16 8 -0.1880 -0.3643 -2.5771 17 8 0.5520 1.0644 -4.0919 18 6 3.1065 -0.2776 -3.3328 19 6 3.2142 -1.6317 -3.5900 20 6 4.1494 -2.0905 -4.4984 21 6 4.9854 -1.1954 -5.1419 22 17 6.1655 -1.7717 -6.2773 23 6 4.8809 0.1590 -4.8799 24 6 3.9412 0.6173 -3.9758 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7082 1.1610 3.4844 29 1 1.4495 -1.4979 -1.4100 30 1 -0.3316 1.0726 -4.4847 31 1 2.5648 -2.3306 -3.0841 32 1 4.2305 -3.1479 -4.7026 33 1 5.5335 0.8581 -5.3817 34 1 3.8593 1.6745 -3.7715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -66.596401 kcal Electronic energy + Delta-G solvation = -19917.133821 eV Core-core repulsion = 16647.903088 eV Total energy + Delta-G solvation = -3269.230733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48067 -39.05359 -36.73945 -36.33442 -35.29054 -33.11152 -31.18433 -30.98519 -28.30129 -25.78641 -25.06401 -22.83160 -22.47540 -20.76661 -20.04336 -17.90328 -17.34212 -16.85387 -16.23666 -15.83466 -15.33281 -14.83652 -14.62078 -14.05777 -13.60074 -13.49016 -13.33801 -12.95873 -12.69735 -12.06844 -11.90873 -11.57506 -11.52849 -11.40670 -11.28436 -10.95469 -10.81307 -10.77917 -10.53631 -10.35487 -9.98699 -9.95085 -9.00125 -8.97282 -8.54611 -8.37963 -7.69276 -6.01944 -4.05904 1.11998 1.34161 2.08792 2.44670 3.25573 3.30631 3.38413 3.43518 3.72096 4.40426 4.71312 4.80789 4.89539 5.05751 5.29779 5.36788 5.37619 5.57357 5.64233 5.69594 5.98326 6.20609 6.24040 6.58745 6.62747 6.73187 6.80444 7.01507 7.07853 7.23464 7.74304 7.78975 8.04763 8.18497 8.31765 8.46875 8.99850 9.59072 11.04918 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004545 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.352646 B = 6158.571080 C = 7155.237373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.207 3.793 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.064 0.936 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.646 5.646 13 C 0.136 3.864 14 H 0.121 0.879 15 C 0.446 3.554 16 O -0.494 6.494 17 O -0.520 6.520 18 C -0.054 4.054 19 C -0.079 4.079 20 C -0.113 4.113 21 C -0.036 4.036 22 Cl -0.082 7.082 23 C -0.113 4.113 24 C -0.089 4.089 25 H 0.082 0.918 26 H 0.020 0.980 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.341 0.659 30 H 0.399 0.601 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -0.626 -16.445 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.100 3.900 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.277 5.277 13 C 0.022 3.978 14 H 0.139 0.861 15 C 0.285 3.715 16 O -0.381 6.381 17 O -0.330 6.330 18 C -0.055 4.055 19 C -0.098 4.098 20 C -0.132 4.132 21 C -0.063 4.063 22 Cl -0.053 7.053 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.162 0.838 30 H 0.257 0.743 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.646 -0.687 -15.907 16.893 hybrid contribution -1.245 -0.333 0.401 1.350 sum 4.400 -1.021 -15.506 16.151 Atomic orbital electron populations 1.22554 0.99380 0.99947 1.00717 1.19411 0.90662 0.94153 0.85797 0.94741 1.21089 1.30478 1.12630 0.89310 0.91730 1.24930 0.95206 0.95180 0.99069 1.69904 1.37057 1.23165 1.23338 0.86425 0.78496 0.79647 0.82735 1.19689 1.21117 1.21185 1.61320 1.57170 1.07926 1.01286 1.20488 0.86097 1.00745 0.90457 0.86140 1.25157 0.92904 0.75869 0.77570 1.90740 1.43648 1.42115 1.61599 1.84617 1.39912 1.64710 1.43764 1.19617 0.96455 0.93733 0.95721 1.20982 0.97725 0.95381 0.95689 1.21002 0.95607 0.99573 0.96996 1.20912 0.94741 0.94221 0.96386 1.98353 1.57428 1.89282 1.60224 1.20943 0.99559 0.93482 0.99209 1.20974 0.94312 1.00028 0.95406 0.89919 0.96127 0.95149 0.93061 0.83832 0.74298 0.84811 0.85062 0.85027 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.77 37.16 0.29 -3.81 16 2 C 0.21 5.03 2.57 -68.86 -0.18 4.85 16 3 H 0.03 0.90 7.43 -51.93 -0.39 0.52 16 4 C -0.50 -13.42 8.84 -34.44 -0.30 -13.73 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -25.31 11.32 55.43 0.63 -24.68 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.65 -12.95 5.45 -103.39 -0.56 -13.51 16 13 C 0.14 2.25 2.70 -70.02 -0.19 2.06 16 14 H 0.12 1.98 7.29 -51.93 -0.38 1.61 16 15 C 0.45 7.21 6.89 36.01 0.25 7.46 16 16 O -0.49 -9.40 13.17 -18.75 -0.25 -9.64 16 17 O -0.52 -6.61 13.34 -39.26 -0.52 -7.14 16 18 C -0.05 -0.78 4.88 -104.62 -0.51 -1.29 16 19 C -0.08 -1.09 9.32 -39.59 -0.37 -1.46 16 20 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 21 C -0.04 -0.43 6.32 -39.50 -0.25 -0.68 16 22 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 23 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 24 C -0.09 -1.10 9.67 -39.59 -0.38 -1.48 16 25 H 0.08 2.24 6.07 -51.92 -0.32 1.93 16 26 H 0.02 0.47 5.07 -51.93 -0.26 0.20 16 27 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.34 6.83 6.86 -39.29 -0.27 6.56 16 30 H 0.40 3.44 9.10 45.56 0.41 3.85 16 31 H 0.13 1.84 7.24 -52.49 -0.38 1.46 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.13 1.42 8.04 -52.49 -0.42 0.99 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -30.05 304.49 -7.97 -38.02 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -2.81 Total: 8.57 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.52 Total: -10.08 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.06 Total: -38.19 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.77 Total: -16.78 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.05 -7.97 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.576 kcal (2) G-P(sol) polarization free energy of solvation -30.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds