Wall clock time and date at job start Tue Mar 31 2020 05:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.46823 * 2 1 4 4 C 1.50701 * 109.46968 * 119.99810 * 2 1 3 5 5 H 1.07994 * 119.99686 * 120.00350 * 4 2 1 6 6 C 1.37873 * 120.00094 * 299.99687 * 4 2 1 7 7 N 1.31517 * 120.00278 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00038 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46952 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00239 * 8 6 4 11 11 H 1.48501 * 109.46986 * 240.00403 * 8 6 4 12 12 N 1.46900 * 109.46916 * 239.99983 * 2 1 3 13 13 C 1.46901 * 110.99890 * 85.00035 * 12 2 1 14 14 H 1.09002 * 109.47401 * 34.99821 * 13 12 2 15 15 C 1.50699 * 109.47121 * 274.99849 * 13 12 2 16 16 O 1.20827 * 120.00172 * 0.02562 * 15 13 12 17 17 O 1.34231 * 120.00242 * 180.02562 * 15 13 12 18 18 C 1.50701 * 109.46921 * 154.99793 * 13 12 2 19 19 C 1.38247 * 119.98318 * 39.72803 * 18 13 12 20 20 C 1.38216 * 120.00783 * 179.72813 * 19 18 13 21 21 C 1.38353 * 119.98575 * 0.53885 * 20 19 18 22 22 Cl 1.73604 * 120.01068 * 179.70538 * 21 20 19 23 23 C 1.38352 * 119.97644 * 359.73437 * 21 20 19 24 24 C 1.38213 * 119.98637 * 359.97438 * 23 21 20 25 25 H 1.09013 * 109.47302 * 300.00440 * 1 2 3 26 26 H 1.08996 * 109.47481 * 59.99993 * 1 2 3 27 27 H 1.09000 * 109.47524 * 180.02562 * 1 2 3 28 28 H 0.97002 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.00898 * 110.99796 * 321.04257 * 12 2 1 30 30 H 0.96696 * 117.00233 * 180.02562 * 17 15 13 31 31 H 1.07990 * 119.99475 * 359.97438 * 19 18 13 32 32 H 1.07998 * 120.00409 * 180.27538 * 20 19 18 33 33 H 1.07997 * 120.00496 * 179.97438 * 23 21 20 34 34 H 1.07994 * 119.99607 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6038 10 1 3.1472 -0.1857 4.8161 11 1 1.1677 -1.5865 4.8165 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3469 14 1 2.3648 1.2177 -2.0031 15 6 0.7323 0.2858 -3.0134 16 8 -0.1880 -0.3643 -2.5771 17 8 0.5520 1.0644 -4.0919 18 6 3.1065 -0.2776 -3.3328 19 6 3.2142 -1.6317 -3.5900 20 6 4.1494 -2.0905 -4.4984 21 6 4.9854 -1.1954 -5.1419 22 17 6.1655 -1.7717 -6.2773 23 6 4.8809 0.1590 -4.8799 24 6 3.9412 0.6173 -3.9758 25 1 -0.3634 0.5140 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 0.7082 1.1610 3.4844 29 1 1.4495 -1.4979 -1.4100 30 1 -0.3316 1.0726 -4.4847 31 1 2.5648 -2.3306 -3.0841 32 1 4.2305 -3.1479 -4.7026 33 1 5.5335 0.8581 -5.3817 34 1 3.8593 1.6745 -3.7715 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222305.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:42 Heat of formation + Delta-G solvation = -85.710474 kcal Electronic energy + Delta-G solvation = -19917.962669 eV Core-core repulsion = 16647.903088 eV Total energy + Delta-G solvation = -3270.059581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.75661 -40.09126 -38.03096 -37.38904 -36.73123 -34.84408 -32.68865 -32.01153 -29.80708 -27.36622 -27.01646 -23.84791 -23.60278 -22.37482 -21.48442 -19.12557 -18.77674 -18.17078 -17.68891 -17.29163 -16.57836 -16.40502 -15.93174 -15.30791 -15.03794 -14.57325 -14.38316 -14.33233 -14.26848 -13.77638 -13.39367 -13.00816 -12.91007 -12.77747 -12.57800 -12.42066 -12.39178 -12.25871 -12.04054 -11.89773 -11.71894 -11.62268 -10.91762 -10.46542 -9.95483 -9.56143 -9.35666 -8.09878 -6.20721 0.11205 0.38426 1.14027 1.18651 1.43253 1.45318 1.57269 2.09736 2.44019 2.69948 3.19377 3.39884 3.69969 3.84109 4.00182 4.16335 4.36358 4.46581 4.57138 4.72050 4.74845 5.00254 5.04179 5.07433 5.23226 5.27635 5.33761 5.55069 5.57950 5.70168 5.79581 5.83560 6.19963 6.46664 6.56218 6.90553 6.98812 7.48215 8.96028 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004545 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.352646 B = 6158.571080 C = 7155.237373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 H 0.014 0.986 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.646 5.646 13 C 0.135 3.865 14 H 0.120 0.880 15 C 0.455 3.545 16 O -0.528 6.528 17 O -0.505 6.505 18 C -0.069 4.069 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.040 4.040 22 Cl -0.070 7.070 23 C -0.109 4.109 24 C -0.089 4.089 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.019 0.981 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.421 0.579 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -0.638 -17.713 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.106 3.894 3 H 0.032 0.968 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.206 1.206 11 H -0.209 1.209 12 N -0.277 5.277 13 C 0.022 3.978 14 H 0.138 0.862 15 C 0.296 3.704 16 O -0.418 6.418 17 O -0.317 6.317 18 C -0.070 4.070 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.067 4.067 22 Cl -0.041 7.041 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.282 0.718 31 H 0.145 0.855 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.812 -0.688 -17.221 18.532 hybrid contribution -1.577 -0.297 0.633 1.725 sum 5.236 -0.985 -16.588 17.423 Atomic orbital electron populations 1.22360 0.99668 0.98913 0.99900 1.19128 0.90190 0.93046 0.87051 0.96805 1.21393 1.30473 1.12597 0.90741 0.92411 1.25686 0.95386 0.95856 1.01860 1.70022 1.37898 1.24289 1.23944 0.85460 0.77965 0.78659 0.79234 1.19227 1.20609 1.20934 1.61134 1.56768 1.08275 1.01507 1.20428 0.87269 1.00039 0.90057 0.86206 1.24885 0.92169 0.75462 0.77882 1.90729 1.44488 1.43662 1.62906 1.84537 1.41669 1.63202 1.42324 1.19486 0.96908 0.94387 0.96264 1.20997 0.98427 0.95188 0.96458 1.21148 0.95121 1.00565 0.96462 1.21075 0.94708 0.94550 0.96319 1.98361 1.56833 1.89206 1.59668 1.21218 0.99218 0.93748 0.98555 1.21175 0.93782 1.00676 0.95088 0.92728 0.94797 0.96147 0.93014 0.83935 0.71776 0.85543 0.83553 0.82568 0.83047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 7.77 71.98 0.56 -6.93 16 2 C 0.21 10.62 2.57 44.17 0.11 10.74 16 3 H 0.01 0.75 7.43 -2.38 -0.02 0.73 16 4 C -0.51 -28.17 8.84 25.60 0.23 -27.94 16 5 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 6 C 0.01 0.58 5.30 84.65 0.45 1.02 16 7 N -0.92 -52.86 11.32 21.45 0.24 -52.62 16 8 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 N -0.65 -26.23 5.45 -481.02 -2.62 -28.85 16 13 C 0.14 4.43 2.70 43.42 0.12 4.54 16 14 H 0.12 3.92 7.29 -2.39 -0.02 3.90 16 15 C 0.46 14.38 6.89 71.24 0.49 14.87 16 16 O -0.53 -19.98 13.17 21.96 0.29 -19.69 16 17 O -0.51 -11.85 13.34 -51.42 -0.69 -12.54 16 18 C -0.07 -1.92 4.88 -19.86 -0.10 -2.01 16 19 C -0.09 -2.46 9.32 22.27 0.21 -2.26 16 20 C -0.11 -2.63 9.83 22.29 0.22 -2.41 16 21 C -0.04 -0.86 6.32 22.32 0.14 -0.72 16 22 Cl -0.07 -1.34 28.96 -2.72 -0.08 -1.42 16 23 C -0.11 -2.20 9.83 22.29 0.22 -1.98 16 24 C -0.09 -2.01 9.67 22.26 0.22 -1.80 16 25 H 0.05 3.03 6.07 -2.38 -0.01 3.02 16 26 H 0.03 1.57 5.07 -2.39 -0.01 1.56 16 27 H 0.02 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 29 H 0.34 13.88 6.86 -89.70 -0.61 13.27 16 30 H 0.42 6.26 9.10 -74.06 -0.67 5.58 16 31 H 0.13 3.49 7.24 -2.92 -0.02 3.47 16 32 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.15 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -64.02 304.49 1.90 -62.12 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -0.13 Total: 22.00 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: 2.86 Total: -14.87 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -2.38 Total: -81.47 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.40 Total: -32.23 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -64.02 1.90 -62.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222305.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.591 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds