Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47137 * 239.99429 * 2 1 3 5 5 H 1.08002 * 120.00359 * 240.00506 * 4 2 1 6 6 C 1.37883 * 119.99561 * 60.00476 * 4 2 1 7 7 N 1.31518 * 120.00050 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99693 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47170 * 60.00280 * 8 6 4 10 10 H 1.48505 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47403 * 300.00175 * 8 6 4 12 12 N 1.46900 * 109.46665 * 119.99930 * 2 1 3 13 13 C 1.46896 * 111.00154 * 275.00130 * 12 2 1 14 14 H 1.09004 * 109.46987 * 324.99951 * 13 12 2 15 15 C 1.50697 * 109.47652 * 84.99800 * 13 12 2 16 16 O 1.20833 * 119.99747 * 0.02562 * 15 13 12 17 17 O 1.34230 * 120.00262 * 179.72202 * 15 13 12 18 18 C 1.50700 * 109.47138 * 205.00032 * 13 12 2 19 19 C 1.38238 * 119.98626 * 319.72513 * 18 13 12 20 20 C 1.38220 * 120.01097 * 179.72633 * 19 18 13 21 21 C 1.38358 * 119.98632 * 0.54644 * 20 19 18 22 22 Cl 1.73600 * 120.01272 * 179.70672 * 21 20 19 23 23 C 1.38345 * 119.97196 * 359.72554 * 21 20 19 24 24 C 1.38222 * 119.98977 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47222 * 300.00478 * 1 2 3 26 26 H 1.09005 * 109.46746 * 60.00114 * 1 2 3 27 27 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 29 29 H 1.00906 * 110.99787 * 38.95322 * 12 2 1 30 30 H 0.96699 * 116.99771 * 180.27188 * 17 15 13 31 31 H 1.08000 * 119.99342 * 359.97438 * 19 18 13 32 32 H 1.07995 * 120.00806 * 180.27201 * 20 19 18 33 33 H 1.08003 * 120.00623 * 179.97438 * 23 21 20 34 34 H 1.08000 * 119.99127 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2225 2.3469 14 1 2.3648 1.2176 2.0031 15 6 0.7323 0.2859 3.0134 16 8 -0.1878 -0.3649 2.5776 17 8 0.5533 1.0606 4.0949 18 6 3.1063 -0.2777 3.3329 19 6 3.2064 -1.6306 3.5986 20 6 4.1492 -2.0905 4.4986 21 6 4.9853 -1.1955 5.1422 22 17 6.1645 -1.7717 6.2784 23 6 4.8808 0.1589 4.8801 24 6 3.9411 0.6172 3.9760 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7097 1.1618 -3.4844 29 1 1.4494 -1.4979 1.4100 30 1 -0.3292 1.0655 4.4902 31 1 2.5505 -2.3287 3.0998 32 1 4.2303 -3.1479 4.7028 33 1 5.5329 0.8581 5.3824 34 1 3.8598 1.6744 3.7710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592222306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = -66.557596 kcal Electronic energy + Delta-G solvation = -19917.147252 eV Core-core repulsion = 16647.918202 eV Total energy + Delta-G solvation = -3269.229050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48090 -39.05236 -36.73892 -36.33455 -35.28906 -33.10926 -31.18309 -30.98545 -28.30082 -25.78384 -25.05848 -22.83352 -22.47445 -20.76584 -20.04225 -17.90263 -17.34158 -16.85145 -16.23806 -15.83016 -15.32920 -14.83697 -14.62234 -14.05721 -13.60483 -13.48929 -13.33846 -12.96273 -12.68999 -12.05874 -11.90441 -11.57471 -11.52920 -11.40824 -11.28283 -10.91365 -10.81442 -10.80819 -10.53328 -10.38796 -9.98116 -9.94245 -9.00228 -8.98637 -8.54668 -8.36916 -7.69279 -6.01421 -4.05524 1.12035 1.34058 2.08781 2.44655 3.25623 3.33837 3.37639 3.40925 3.72038 4.40559 4.71370 4.80725 4.89448 5.05916 5.30051 5.36773 5.37407 5.57372 5.64251 5.69556 5.98192 6.20559 6.23963 6.58658 6.62745 6.73399 6.80372 7.01680 7.07980 7.23658 7.74535 7.78732 8.04914 8.18663 8.31983 8.47154 8.99462 9.59238 11.05369 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.004545 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.826197 B = 6159.599759 C = 7155.447756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.207 3.793 3 H 0.035 0.965 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.646 5.646 13 C 0.136 3.864 14 H 0.121 0.879 15 C 0.446 3.554 16 O -0.495 6.495 17 O -0.520 6.520 18 C -0.054 4.054 19 C -0.080 4.080 20 C -0.113 4.113 21 C -0.036 4.036 22 Cl -0.082 7.082 23 C -0.113 4.113 24 C -0.089 4.089 25 H 0.020 0.980 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.399 0.601 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.802 -0.605 16.431 17.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.101 3.899 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.082 0.918 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.277 5.277 13 C 0.022 3.978 14 H 0.139 0.861 15 C 0.285 3.715 16 O -0.381 6.381 17 O -0.330 6.330 18 C -0.055 4.055 19 C -0.098 4.098 20 C -0.131 4.131 21 C -0.063 4.063 22 Cl -0.053 7.053 23 C -0.132 4.132 24 C -0.107 4.107 25 H 0.039 0.961 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.162 0.838 30 H 0.257 0.743 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.150 0.850 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.620 -0.657 15.888 16.865 hybrid contribution -1.230 -0.359 -0.390 1.339 sum 4.390 -1.016 15.498 16.139 Atomic orbital electron populations 1.22554 0.99389 0.99943 1.00710 1.19398 0.90649 0.94139 0.85762 0.94748 1.21012 1.30644 1.12675 0.89335 0.91845 1.24928 0.95187 0.95177 0.99044 1.69885 1.36974 1.23060 1.23555 0.86533 0.79153 0.79618 0.81904 1.20326 1.21449 1.20243 1.61322 1.57166 1.07928 1.01286 1.20488 0.86086 1.00747 0.90471 0.86145 1.25160 0.92887 0.75851 0.77606 1.90742 1.43634 1.41988 1.61743 1.84618 1.40013 1.64904 1.43461 1.19610 0.96465 0.93736 0.95660 1.20981 0.97693 0.95381 0.95770 1.21001 0.95502 0.99564 0.97075 1.20910 0.94770 0.94217 0.96379 1.98353 1.57519 1.89287 1.60124 1.20946 0.99540 0.93485 0.99207 1.20978 0.94351 1.00022 0.95384 0.96132 0.89926 0.95151 0.92944 0.83835 0.74299 0.84836 0.85062 0.85026 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.78 37.16 0.29 -3.81 16 2 C 0.21 5.05 2.57 -68.86 -0.18 4.87 16 3 H 0.03 0.90 7.43 -51.93 -0.39 0.51 16 4 C -0.50 -13.47 8.84 -34.44 -0.30 -13.78 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.65 -12.96 5.47 -103.40 -0.57 -13.52 16 13 C 0.14 2.25 2.70 -70.02 -0.19 2.06 16 14 H 0.12 1.98 7.29 -51.93 -0.38 1.61 16 15 C 0.45 7.21 6.89 36.00 0.25 7.46 16 16 O -0.49 -9.40 13.17 -18.76 -0.25 -9.65 16 17 O -0.52 -6.61 13.34 -39.26 -0.52 -7.13 16 18 C -0.05 -0.77 4.87 -104.62 -0.51 -1.28 16 19 C -0.08 -1.10 9.32 -39.59 -0.37 -1.47 16 20 C -0.11 -1.39 9.83 -39.54 -0.39 -1.78 16 21 C -0.04 -0.44 6.32 -39.50 -0.25 -0.68 16 22 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 23 C -0.11 -1.30 9.83 -39.55 -0.39 -1.69 16 24 C -0.09 -1.10 9.67 -39.59 -0.38 -1.48 16 25 H 0.02 0.46 5.07 -51.93 -0.26 0.20 16 26 H 0.08 2.24 6.07 -51.93 -0.32 1.93 16 27 H 0.03 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.34 6.83 6.86 -39.29 -0.27 6.56 16 30 H 0.40 3.44 9.10 45.56 0.41 3.85 16 31 H 0.13 1.83 7.25 -52.49 -0.38 1.45 16 32 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 34 H 0.13 1.42 8.04 -52.49 -0.42 1.00 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -30.01 304.52 -7.97 -37.98 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -2.81 Total: 8.63 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.52 Total: -10.09 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.06 Total: -38.22 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.77 Total: -16.78 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.01 -7.97 -37.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.575 kcal (2) G-P(sol) polarization free energy of solvation -30.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds