Wall clock time and date at job start Tue Mar 31 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08990 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47137 * 239.99429 * 2 1 3 5 5 H 1.08002 * 120.00359 * 240.00506 * 4 2 1 6 6 C 1.37883 * 119.99561 * 60.00476 * 4 2 1 7 7 N 1.31518 * 120.00050 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 119.99693 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47170 * 60.00280 * 8 6 4 10 10 H 1.48505 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47403 * 300.00175 * 8 6 4 12 12 N 1.46900 * 109.46665 * 119.99930 * 2 1 3 13 13 C 1.46896 * 111.00154 * 275.00130 * 12 2 1 14 14 H 1.09004 * 109.46987 * 324.99951 * 13 12 2 15 15 C 1.50697 * 109.47652 * 84.99800 * 13 12 2 16 16 O 1.20833 * 119.99747 * 0.02562 * 15 13 12 17 17 O 1.34230 * 120.00262 * 179.72202 * 15 13 12 18 18 C 1.50700 * 109.47138 * 205.00032 * 13 12 2 19 19 C 1.38238 * 119.98626 * 319.72513 * 18 13 12 20 20 C 1.38220 * 120.01097 * 179.72633 * 19 18 13 21 21 C 1.38358 * 119.98632 * 0.54644 * 20 19 18 22 22 Cl 1.73600 * 120.01272 * 179.70672 * 21 20 19 23 23 C 1.38345 * 119.97196 * 359.72554 * 21 20 19 24 24 C 1.38222 * 119.98977 * 0.02562 * 23 21 20 25 25 H 1.08995 * 109.47222 * 300.00478 * 1 2 3 26 26 H 1.09005 * 109.46746 * 60.00114 * 1 2 3 27 27 H 1.08998 * 109.47503 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99703 * 179.97438 * 7 6 4 29 29 H 1.00906 * 110.99787 * 38.95322 * 12 2 1 30 30 H 0.96699 * 116.99771 * 180.27188 * 17 15 13 31 31 H 1.08000 * 119.99342 * 359.97438 * 19 18 13 32 32 H 1.07995 * 120.00806 * 180.27201 * 20 19 18 33 33 H 1.08003 * 120.00623 * 179.97438 * 23 21 20 34 34 H 1.08000 * 119.99127 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5887 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3225 -1.1197 -4.0078 9 1 1.8280 -2.5199 -4.0080 10 1 1.8280 -0.4194 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.0823 0.2225 2.3469 14 1 2.3648 1.2176 2.0031 15 6 0.7323 0.2859 3.0134 16 8 -0.1878 -0.3649 2.5776 17 8 0.5533 1.0606 4.0949 18 6 3.1063 -0.2777 3.3329 19 6 3.2064 -1.6306 3.5986 20 6 4.1492 -2.0905 4.4986 21 6 4.9853 -1.1955 5.1422 22 17 6.1645 -1.7717 6.2784 23 6 4.8808 0.1589 4.8801 24 6 3.9411 0.6172 3.9760 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7097 1.1618 -3.4844 29 1 1.4494 -1.4979 1.4100 30 1 -0.3292 1.0655 4.4902 31 1 2.5505 -2.3287 3.0998 32 1 4.2303 -3.1479 4.7028 33 1 5.5329 0.8581 5.3824 34 1 3.8598 1.6744 3.7710 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592222306.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:44 Heat of formation + Delta-G solvation = -85.642673 kcal Electronic energy + Delta-G solvation = -19917.974843 eV Core-core repulsion = 16647.918202 eV Total energy + Delta-G solvation = -3270.056641 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.75707 -40.09029 -38.03051 -37.38957 -36.73033 -34.84194 -32.68870 -32.01086 -29.80762 -27.36357 -27.01157 -23.84933 -23.60226 -22.37402 -21.48511 -19.12527 -18.77285 -18.16929 -17.68741 -17.28954 -16.57932 -16.40512 -15.93138 -15.30715 -15.04443 -14.56588 -14.38270 -14.32776 -14.26979 -13.76954 -13.39247 -13.00822 -12.89434 -12.77383 -12.57211 -12.42585 -12.39323 -12.28487 -12.04467 -11.89159 -11.71936 -11.61898 -10.93311 -10.45308 -9.95489 -9.56280 -9.35654 -8.09392 -6.20393 0.11210 0.38315 1.13941 1.18677 1.45320 1.46705 1.54256 2.09731 2.44245 2.69896 3.19693 3.40019 3.69890 3.84043 4.00040 4.16232 4.36395 4.46429 4.57073 4.71996 4.74930 5.00295 5.04061 5.07473 5.23171 5.27590 5.33797 5.55012 5.57844 5.69940 5.79492 5.83471 6.20033 6.46909 6.56248 6.90229 6.98776 7.48343 8.96125 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.004545 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.826197 B = 6159.599759 C = 7155.447756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.014 0.986 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.271 1.271 12 N -0.646 5.646 13 C 0.135 3.865 14 H 0.120 0.880 15 C 0.455 3.545 16 O -0.528 6.528 17 O -0.505 6.505 18 C -0.069 4.069 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.040 4.040 22 Cl -0.070 7.070 23 C -0.109 4.109 24 C -0.089 4.089 25 H 0.033 0.967 26 H 0.054 0.946 27 H 0.019 0.981 28 H 0.261 0.739 29 H 0.341 0.659 30 H 0.421 0.579 31 H 0.127 0.873 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.972 -0.640 17.702 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.106 3.894 3 H 0.032 0.968 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.277 5.277 13 C 0.022 3.978 14 H 0.138 0.862 15 C 0.296 3.704 16 O -0.418 6.418 17 O -0.317 6.317 18 C -0.070 4.070 19 C -0.111 4.111 20 C -0.133 4.133 21 C -0.067 4.067 22 Cl -0.041 7.041 23 C -0.127 4.127 24 C -0.107 4.107 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.161 0.839 30 H 0.282 0.718 31 H 0.144 0.856 32 H 0.165 0.835 33 H 0.174 0.826 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 6.796 -0.682 17.205 18.511 hybrid contribution -1.563 -0.316 -0.620 1.711 sum 5.233 -0.998 16.585 17.419 Atomic orbital electron populations 1.22359 0.99678 0.98897 0.99898 1.19117 0.90178 0.93033 0.87029 0.96822 1.21338 1.30649 1.12681 0.90757 0.92408 1.25687 0.95362 0.95850 1.01849 1.70010 1.37836 1.24199 1.24071 0.85569 0.78752 0.78550 0.78462 1.19909 1.21102 1.19642 1.61135 1.56762 1.08277 1.01507 1.20427 0.87260 1.00038 0.90074 0.86219 1.24887 0.92150 0.75441 0.77925 1.90731 1.44475 1.43540 1.63046 1.84538 1.41766 1.63401 1.42017 1.19480 0.96921 0.94399 0.96202 1.20996 0.98386 0.95185 0.96533 1.21148 0.95013 1.00556 0.96547 1.21073 0.94737 0.94546 0.96310 1.98361 1.56926 1.89211 1.59567 1.21221 0.99200 0.93754 0.98554 1.21178 0.93827 1.00667 0.95068 0.94802 0.92725 0.96166 0.92997 0.83941 0.71775 0.85555 0.83549 0.82568 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.49 7.78 71.98 0.56 -6.93 16 2 C 0.21 10.66 2.57 44.17 0.11 10.78 16 3 H 0.01 0.74 7.43 -2.39 -0.02 0.72 16 4 C -0.52 -28.29 8.84 25.60 0.23 -28.07 16 5 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.01 0.60 5.30 84.66 0.45 1.05 16 7 N -0.92 -52.89 11.32 21.45 0.24 -52.65 16 8 Si 0.96 43.81 29.54 68.60 2.03 45.84 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 12 N -0.65 -26.24 5.47 -481.05 -2.63 -28.87 16 13 C 0.14 4.43 2.70 43.42 0.12 4.54 16 14 H 0.12 3.92 7.29 -2.38 -0.02 3.90 16 15 C 0.46 14.39 6.89 71.23 0.49 14.88 16 16 O -0.53 -19.99 13.17 21.94 0.29 -19.70 16 17 O -0.51 -11.85 13.34 -51.41 -0.69 -12.54 16 18 C -0.07 -1.91 4.87 -19.86 -0.10 -2.00 16 19 C -0.09 -2.47 9.32 22.27 0.21 -2.26 16 20 C -0.11 -2.62 9.83 22.29 0.22 -2.40 16 21 C -0.04 -0.87 6.32 22.32 0.14 -0.73 16 22 Cl -0.07 -1.34 28.96 -2.72 -0.08 -1.42 16 23 C -0.11 -2.20 9.83 22.29 0.22 -1.98 16 24 C -0.09 -2.02 9.67 22.27 0.22 -1.80 16 25 H 0.03 1.57 5.07 -2.39 -0.01 1.56 16 26 H 0.05 3.03 6.07 -2.38 -0.01 3.02 16 27 H 0.02 1.00 8.13 -2.39 -0.02 0.98 16 28 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.34 13.89 6.86 -89.69 -0.62 13.27 16 30 H 0.42 6.25 9.10 -74.06 -0.67 5.58 16 31 H 0.13 3.48 7.25 -2.91 -0.02 3.46 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.15 2.82 8.04 -2.91 -0.02 2.80 16 Total: -1.00 -63.95 304.52 1.89 -62.06 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.13 Total: 22.20 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 2.86 Total: -14.92 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -2.39 Total: -81.52 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.40 Total: -32.24 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -63.95 1.89 -62.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592222306.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.585 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds