Wall clock time and date at job start Tue Mar 31 2020 05:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47394 * 2 1 4 4 C 1.36940 * 120.00298 * 90.14201 * 3 2 1 5 5 H 1.08006 * 119.99886 * 37.08178 * 4 3 2 6 6 C 1.38811 * 120.00162 * 216.81565 * 4 3 2 7 7 N 1.31618 * 120.00011 * 218.44130 * 6 4 3 8 8 Si 1.86798 * 119.99925 * 38.44192 * 6 4 3 9 9 H 1.48501 * 109.47338 * 89.24392 * 8 6 4 10 10 H 1.48502 * 109.47083 * 209.24413 * 8 6 4 11 11 H 1.48501 * 109.47231 * 329.24060 * 8 6 4 12 12 C 1.46500 * 120.00092 * 270.14481 * 3 2 1 13 13 C 1.50699 * 109.47121 * 264.24372 * 12 3 2 14 14 C 1.38317 * 119.93406 * 265.44509 * 13 12 3 15 15 C 1.38391 * 120.32582 * 179.72349 * 14 13 12 16 16 C 1.37919 * 120.19230 * 0.54594 * 15 14 13 17 17 C 1.39642 * 119.85928 * 359.72701 * 16 15 14 18 18 C 1.47640 * 120.16378 * 179.97438 * 17 16 15 19 19 O 1.21479 * 120.00321 * 180.02562 * 18 17 16 20 20 O 1.34724 * 120.00050 * 0.02613 * 18 17 16 21 21 C 1.38103 * 119.93122 * 85.71200 * 13 12 3 22 22 Cl 1.73598 * 120.09593 * 0.02634 * 21 13 12 23 23 H 1.08998 * 109.46767 * 64.78198 * 1 2 3 24 24 H 1.09003 * 109.46711 * 184.78576 * 1 2 3 25 25 H 1.08999 * 109.46649 * 304.78627 * 1 2 3 26 26 H 1.09000 * 109.47240 * 239.99946 * 2 1 3 27 27 H 1.09005 * 109.47259 * 119.99971 * 2 1 3 28 28 H 0.96999 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47305 * 24.24149 * 12 3 2 30 30 H 1.08998 * 109.47429 * 144.24391 * 12 3 2 31 31 H 1.07994 * 119.83611 * 359.97438 * 14 13 12 32 32 H 1.08003 * 119.90354 * 180.27715 * 15 14 13 33 33 H 1.07996 * 120.07472 * 179.75188 * 16 15 14 34 34 H 0.96696 * 116.99873 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2495 2.0258 1.1859 5 1 2.6577 1.4824 2.0253 6 6 1.9641 3.3788 1.3075 7 7 2.7657 4.1608 1.9990 8 14 0.4425 4.0896 0.4898 9 1 -0.7087 4.0004 1.4236 10 1 0.6872 5.5120 0.1401 11 1 0.1393 3.3216 -0.7445 12 6 2.2596 2.0728 -1.2687 13 6 3.7164 1.9550 -1.6361 14 6 4.5993 2.9615 -1.2888 15 6 5.9398 2.8590 -1.6170 16 6 6.4035 1.7564 -2.3036 17 6 5.5180 0.7382 -2.6630 18 6 6.0070 -0.4449 -3.3985 19 8 5.2340 -1.3287 -3.7102 20 8 7.3105 -0.5444 -3.7240 21 6 4.1660 0.8449 -2.3236 22 17 3.0556 -0.4141 -2.7656 23 1 -0.3633 0.4379 -0.9297 24 1 -0.3633 -1.0241 0.0857 25 1 -0.3632 0.5863 0.8440 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5666 5.1064 2.0838 29 1 1.6500 1.6204 -2.0508 30 1 1.9950 3.1251 -1.1649 31 1 4.2416 3.8297 -0.7553 32 1 6.6241 3.6469 -1.3386 33 1 7.4492 1.6802 -2.5623 34 1 7.5835 -1.3375 -4.2052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:37 Heat of formation + Delta-G solvation = -38.762489 kcal Electronic energy + Delta-G solvation = -20458.347866 eV Core-core repulsion = 17190.324103 eV Total energy + Delta-G solvation = -3268.023764 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23762 -38.69798 -36.18474 -36.08391 -35.76876 -32.04639 -31.87940 -30.69125 -29.04470 -25.83194 -24.53639 -23.74680 -21.67111 -21.06441 -20.01108 -17.88005 -17.39643 -16.50385 -15.92127 -15.54830 -15.47036 -14.79347 -14.49721 -14.22399 -13.66163 -13.36011 -13.17994 -12.77251 -12.55041 -12.16838 -11.91833 -11.54213 -11.48017 -11.45171 -11.34116 -11.09373 -11.04045 -10.69805 -10.45638 -10.22559 -10.06568 -9.64018 -9.36125 -8.65377 -8.49233 -8.25933 -6.91430 -6.21339 -3.39656 0.89311 1.53419 2.48561 2.75576 3.08840 3.31405 3.44523 3.50827 3.95906 4.47773 4.92061 4.99168 5.19044 5.27183 5.33326 5.58175 5.60395 5.87762 6.00087 6.07670 6.19833 6.29841 6.33901 6.36654 6.50091 6.57764 6.63389 6.69607 6.84333 6.93012 7.08007 7.10513 7.90500 7.98424 8.33018 8.91574 9.63295 10.09826 10.93659 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.007011 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.902389 B = 3992.734013 C = 4893.936904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.128 3.872 3 N -0.586 5.586 4 C -0.277 4.277 5 H 0.075 0.925 6 C 0.054 3.946 7 N -0.866 5.866 8 Si 0.833 3.167 9 H -0.287 1.287 10 H -0.294 1.294 11 H -0.261 1.261 12 C 0.178 3.822 13 C -0.083 4.083 14 C -0.040 4.040 15 C -0.133 4.133 16 C -0.068 4.068 17 C -0.138 4.138 18 C 0.523 3.477 19 O -0.499 6.499 20 O -0.516 6.516 21 C 0.025 3.975 22 Cl -0.038 7.038 23 H 0.040 0.960 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.264 0.736 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.356 -4.706 -10.406 13.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.003 3.997 3 N -0.307 5.307 4 C -0.405 4.405 5 H 0.092 0.908 6 C -0.149 4.149 7 N -0.503 5.503 8 Si 0.659 3.341 9 H -0.215 1.215 10 H -0.221 1.221 11 H -0.186 1.186 12 C 0.052 3.948 13 C -0.087 4.087 14 C -0.059 4.059 15 C -0.151 4.151 16 C -0.087 4.087 17 C -0.140 4.140 18 C 0.367 3.633 19 O -0.387 6.387 20 O -0.328 6.328 21 C -0.003 4.003 22 Cl -0.008 7.008 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 5.933 -4.571 -10.197 12.652 hybrid contribution -0.794 -0.048 -0.509 0.944 sum 5.139 -4.619 -10.705 12.742 Atomic orbital electron populations 1.22319 0.99758 0.99447 1.01275 1.21246 0.91742 0.86500 1.00220 1.44053 1.74063 1.11254 1.01287 1.18635 1.38184 0.92588 0.91059 0.90750 1.25404 0.97172 0.96071 0.96281 1.70161 1.33250 1.04812 1.42102 0.87587 0.88218 0.77692 0.80611 1.21458 1.22109 1.18606 1.20307 0.87406 0.98161 0.88921 1.20952 1.01379 0.91756 0.94650 1.21467 0.92307 0.98401 0.93766 1.21222 0.96141 0.98343 0.99399 1.21227 0.99046 0.92212 0.96216 1.18667 0.92745 0.95591 1.06966 1.20840 0.79652 0.86117 0.76662 1.90956 1.56088 1.40416 1.51267 1.84561 1.27834 1.48818 1.71588 1.20849 0.89082 0.91551 0.98838 1.98355 1.61355 1.50663 1.90435 0.94100 0.94207 0.92640 0.92734 0.93370 0.92625 0.92425 0.91898 0.84017 0.85092 0.84552 0.73252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.24 37.16 0.38 -2.78 16 2 C 0.13 2.61 6.36 -4.04 -0.03 2.59 16 3 N -0.59 -13.44 2.06 -174.61 -0.36 -13.80 16 4 C -0.28 -7.28 9.68 -15.06 -0.15 -7.42 16 5 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 6 C 0.05 1.43 4.98 -17.43 -0.09 1.35 16 7 N -0.87 -24.02 13.97 55.49 0.78 -23.25 16 8 Si 0.83 20.16 26.53 -169.99 -4.51 15.65 16 9 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.10 6.06 56.52 0.34 -5.76 16 12 C 0.18 3.76 4.18 -5.19 -0.02 3.74 16 13 C -0.08 -1.61 5.42 -104.64 -0.57 -2.18 16 14 C -0.04 -0.73 9.67 -39.50 -0.38 -1.11 16 15 C -0.13 -1.99 10.03 -39.64 -0.40 -2.39 16 16 C -0.07 -0.97 9.62 -39.17 -0.38 -1.35 16 17 C -0.14 -2.25 5.88 -104.95 -0.62 -2.86 16 18 C 0.52 7.85 8.26 34.57 0.29 8.14 16 19 O -0.50 -8.56 14.76 -19.25 -0.28 -8.84 16 20 O -0.52 -5.66 12.68 -40.56 -0.51 -6.17 16 21 C 0.02 0.45 6.35 -39.05 -0.25 0.21 16 22 Cl -0.04 -0.68 21.43 -51.86 -1.11 -1.79 16 23 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.05 1.05 4.63 -51.93 -0.24 0.81 16 27 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.06 1.14 6.97 -51.93 -0.36 0.78 16 30 H 0.06 1.39 4.34 -51.93 -0.23 1.17 16 31 H 0.14 2.76 8.06 -52.49 -0.42 2.33 16 32 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 33 H 0.14 1.58 7.61 -52.49 -0.40 1.18 16 34 H 0.41 2.51 9.11 45.56 0.42 2.93 16 LS Contribution 299.98 15.07 4.52 4.52 Total: -1.00 -29.85 299.98 -6.65 -36.49 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -2.96 Total: 1.27 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -2.20 Total: -4.09 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.42 Total: -37.04 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.80 Total: -15.01 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.51 Total: 15.65 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.11 Total: -1.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.85 -6.65 -36.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.268 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds