Wall clock time and date at job start Tue Mar 31 2020 05:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47394 * 2 1 4 4 C 1.36940 * 120.00298 * 90.14201 * 3 2 1 5 5 H 1.08006 * 119.99886 * 37.08178 * 4 3 2 6 6 C 1.38811 * 120.00162 * 216.81565 * 4 3 2 7 7 N 1.31618 * 120.00011 * 218.44130 * 6 4 3 8 8 Si 1.86798 * 119.99925 * 38.44192 * 6 4 3 9 9 H 1.48501 * 109.47338 * 89.24392 * 8 6 4 10 10 H 1.48502 * 109.47083 * 209.24413 * 8 6 4 11 11 H 1.48501 * 109.47231 * 329.24060 * 8 6 4 12 12 C 1.46500 * 120.00092 * 270.14481 * 3 2 1 13 13 C 1.50699 * 109.47121 * 264.24372 * 12 3 2 14 14 C 1.38317 * 119.93406 * 265.44509 * 13 12 3 15 15 C 1.38391 * 120.32582 * 179.72349 * 14 13 12 16 16 C 1.37919 * 120.19230 * 0.54594 * 15 14 13 17 17 C 1.39642 * 119.85928 * 359.72701 * 16 15 14 18 18 C 1.47640 * 120.16378 * 179.97438 * 17 16 15 19 19 O 1.21479 * 120.00321 * 180.02562 * 18 17 16 20 20 O 1.34724 * 120.00050 * 0.02613 * 18 17 16 21 21 C 1.38103 * 119.93122 * 85.71200 * 13 12 3 22 22 Cl 1.73598 * 120.09593 * 0.02634 * 21 13 12 23 23 H 1.08998 * 109.46767 * 64.78198 * 1 2 3 24 24 H 1.09003 * 109.46711 * 184.78576 * 1 2 3 25 25 H 1.08999 * 109.46649 * 304.78627 * 1 2 3 26 26 H 1.09000 * 109.47240 * 239.99946 * 2 1 3 27 27 H 1.09005 * 109.47259 * 119.99971 * 2 1 3 28 28 H 0.96999 * 120.00465 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47305 * 24.24149 * 12 3 2 30 30 H 1.08998 * 109.47429 * 144.24391 * 12 3 2 31 31 H 1.07994 * 119.83611 * 359.97438 * 14 13 12 32 32 H 1.08003 * 119.90354 * 180.27715 * 15 14 13 33 33 H 1.07996 * 120.07472 * 179.75188 * 16 15 14 34 34 H 0.96696 * 116.99873 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2495 2.0258 1.1859 5 1 2.6577 1.4824 2.0253 6 6 1.9641 3.3788 1.3075 7 7 2.7657 4.1608 1.9990 8 14 0.4425 4.0896 0.4898 9 1 -0.7087 4.0004 1.4236 10 1 0.6872 5.5120 0.1401 11 1 0.1393 3.3216 -0.7445 12 6 2.2596 2.0728 -1.2687 13 6 3.7164 1.9550 -1.6361 14 6 4.5993 2.9615 -1.2888 15 6 5.9398 2.8590 -1.6170 16 6 6.4035 1.7564 -2.3036 17 6 5.5180 0.7382 -2.6630 18 6 6.0070 -0.4449 -3.3985 19 8 5.2340 -1.3287 -3.7102 20 8 7.3105 -0.5444 -3.7240 21 6 4.1660 0.8449 -2.3236 22 17 3.0556 -0.4141 -2.7656 23 1 -0.3633 0.4379 -0.9297 24 1 -0.3633 -1.0241 0.0857 25 1 -0.3632 0.5863 0.8440 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.5666 5.1064 2.0838 29 1 1.6500 1.6204 -2.0508 30 1 1.9950 3.1251 -1.1649 31 1 4.2416 3.8297 -0.7553 32 1 6.6241 3.6469 -1.3386 33 1 7.4492 1.6802 -2.5623 34 1 7.5835 -1.3375 -4.2052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596200027.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:36 Heat of formation + Delta-G solvation = -56.663496 kcal Electronic energy + Delta-G solvation = -20459.124112 eV Core-core repulsion = 17190.324103 eV Total energy + Delta-G solvation = -3268.800010 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41002 -39.99901 -37.74672 -37.45577 -36.92786 -34.02496 -33.30392 -31.99290 -30.69316 -27.51342 -25.82183 -25.45853 -23.04889 -22.34882 -21.64163 -19.24179 -18.71469 -18.06288 -17.26153 -17.06685 -16.70211 -16.42514 -16.11238 -15.59286 -15.17331 -15.04300 -14.52420 -14.17224 -14.15112 -13.88950 -13.53531 -13.00511 -12.89808 -12.79357 -12.64972 -12.53480 -12.50392 -12.45106 -12.12877 -11.94244 -11.55652 -11.49066 -10.77674 -10.48393 -9.99075 -9.64247 -8.77540 -8.26938 -5.43254 -0.38296 0.22659 1.12612 1.35060 1.46714 1.53801 1.55502 2.03612 2.45640 2.63959 3.00358 3.56102 3.70579 3.94917 4.05970 4.22084 4.30397 4.41072 4.56290 4.65525 4.73358 4.83442 4.90411 4.91690 5.07045 5.09140 5.23144 5.35296 5.51804 5.54081 5.59854 5.76966 5.93362 6.23455 7.00284 7.01627 7.66696 8.15003 8.92204 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021193 B = 0.007011 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.902389 B = 3992.734013 C = 4893.936904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 N -0.596 5.596 4 C -0.270 4.270 5 H 0.036 0.964 6 C 0.021 3.979 7 N -0.903 5.903 8 Si 0.886 3.114 9 H -0.297 1.297 10 H -0.293 1.293 11 H -0.249 1.249 12 C 0.180 3.820 13 C -0.103 4.103 14 C -0.058 4.058 15 C -0.124 4.124 16 C -0.048 4.048 17 C -0.146 4.146 18 C 0.530 3.470 19 O -0.525 6.525 20 O -0.500 6.500 21 C 0.011 3.989 22 Cl -0.041 7.041 23 H 0.043 0.957 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.069 0.931 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.121 0.879 32 H 0.163 0.837 33 H 0.175 0.825 34 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -5.283 -12.258 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.001 4.001 3 N -0.317 5.317 4 C -0.399 4.399 5 H 0.054 0.946 6 C -0.180 4.180 7 N -0.544 5.544 8 Si 0.712 3.288 9 H -0.225 1.225 10 H -0.220 1.220 11 H -0.172 1.172 12 C 0.054 3.946 13 C -0.107 4.107 14 C -0.077 4.077 15 C -0.142 4.142 16 C -0.066 4.066 17 C -0.148 4.148 18 C 0.375 3.625 19 O -0.415 6.415 20 O -0.314 6.314 21 C -0.017 4.017 22 Cl -0.012 7.012 23 H 0.063 0.937 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.181 0.819 33 H 0.192 0.808 34 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges 7.288 -5.171 -12.095 15.038 hybrid contribution -1.022 0.057 0.006 1.024 sum 6.267 -5.114 -12.089 14.545 Atomic orbital electron populations 1.22220 0.98216 1.01054 1.00555 1.21347 0.92997 0.85323 1.00384 1.44103 1.74936 1.11859 1.00838 1.18380 1.37419 0.92528 0.91570 0.94612 1.25696 0.98601 0.96315 0.97390 1.70210 1.34546 1.05088 1.44514 0.86744 0.84762 0.77230 0.80057 1.22532 1.21992 1.17247 1.20212 0.89154 0.97056 0.88174 1.20722 1.00344 0.93080 0.96533 1.21447 0.93962 0.97790 0.94512 1.21540 0.95019 0.99377 0.98219 1.21641 1.00380 0.90605 0.93981 1.18958 0.92265 0.96794 1.06790 1.20556 0.80604 0.85190 0.76149 1.90955 1.57159 1.41133 1.52285 1.84485 1.25221 1.50304 1.71366 1.20918 0.90135 0.91196 0.99474 1.98341 1.61715 1.50705 1.90432 0.93742 0.91230 0.94546 0.91341 0.94419 0.92567 0.91452 0.93380 0.86073 0.81896 0.80779 0.70436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.88 10.24 71.98 0.74 -5.14 16 2 C 0.12 5.05 6.36 86.38 0.55 5.60 16 3 N -0.60 -27.62 2.06 -706.35 -1.46 -29.08 16 4 C -0.27 -14.62 9.68 84.03 0.81 -13.81 16 5 H 0.04 2.19 8.06 -2.91 -0.02 2.16 16 6 C 0.02 1.12 4.98 84.86 0.42 1.55 16 7 N -0.90 -51.53 13.97 21.65 0.30 -51.23 16 8 Si 0.89 42.44 26.53 68.60 1.82 44.26 16 9 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.25 -11.26 6.06 99.48 0.60 -10.66 16 12 C 0.18 7.59 4.18 85.63 0.36 7.95 16 13 C -0.10 -3.97 5.42 -19.88 -0.11 -4.08 16 14 C -0.06 -2.08 9.67 22.33 0.22 -1.87 16 15 C -0.12 -3.39 10.03 22.23 0.22 -3.17 16 16 C -0.05 -1.19 9.62 22.53 0.22 -0.97 16 17 C -0.15 -4.40 5.88 -20.08 -0.12 -4.52 16 18 C 0.53 14.34 8.26 70.30 0.58 14.92 16 19 O -0.52 -16.90 14.76 19.90 0.29 -16.60 16 20 O -0.50 -8.81 12.68 -56.34 -0.71 -9.53 16 21 C 0.01 0.38 6.35 22.61 0.14 0.52 16 22 Cl -0.04 -1.45 21.43 -2.72 -0.06 -1.51 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.43 16 26 H 0.07 2.59 4.63 -2.39 -0.01 2.58 16 27 H 0.04 1.58 8.04 -2.38 -0.02 1.56 16 28 H 0.27 14.35 8.31 -92.71 -0.77 13.57 16 29 H 0.07 2.65 6.97 -2.39 -0.02 2.63 16 30 H 0.05 2.14 4.34 -2.39 -0.01 2.13 16 31 H 0.12 4.84 8.06 -2.91 -0.02 4.81 16 32 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 33 H 0.17 3.06 7.61 -2.91 -0.02 3.03 16 34 H 0.43 3.44 9.11 -74.06 -0.67 2.77 16 Total: -1.00 -65.42 299.98 4.59 -60.83 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 0.36 Total: 5.88 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 4.04 Total: -3.02 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -1.15 Total: -80.31 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.42 Total: -26.13 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 1.82 Total: 44.26 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.06 Total: -1.51 kcal Total: -65.42 4.59 -60.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200027.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.167 kcal (2) G-P(sol) polarization free energy of solvation -65.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds