Wall clock time and date at job start Tue Mar 31 2020 05:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.46939 * 2 1 4 4 C 1.36936 * 119.99793 * 95.50294 * 3 2 1 5 5 H 1.08006 * 120.00234 * 38.34384 * 4 3 2 6 6 C 1.38814 * 119.99928 * 218.62134 * 4 3 2 7 7 N 1.31618 * 119.99803 * 211.06754 * 6 4 3 8 8 Si 1.86792 * 120.00102 * 31.07332 * 6 4 3 9 9 H 1.48501 * 109.47267 * 93.88332 * 8 6 4 10 10 H 1.48505 * 109.47263 * 213.88354 * 8 6 4 11 11 H 1.48504 * 109.47198 * 333.88241 * 8 6 4 12 12 C 1.46497 * 120.00486 * 275.50156 * 3 2 1 13 13 C 1.50692 * 109.47298 * 275.42017 * 12 3 2 14 14 C 1.38436 * 119.83610 * 269.72512 * 13 12 3 15 15 C 1.37883 * 120.18708 * 179.72271 * 14 13 12 16 16 C 1.39682 * 119.86060 * 0.52309 * 15 14 13 17 17 C 1.47643 * 120.16142 * 179.72709 * 16 15 14 18 18 O 1.21478 * 120.00125 * 180.02562 * 17 16 15 19 19 O 1.34717 * 119.99794 * 0.02562 * 17 16 15 20 20 C 1.39745 * 119.67903 * 359.75315 * 16 15 14 21 21 Cl 1.73599 * 120.09641 * 179.97438 * 20 16 15 22 22 C 1.38148 * 119.81081 * 359.97438 * 20 16 15 23 23 H 1.08998 * 109.47101 * 299.86353 * 1 2 3 24 24 H 1.08998 * 109.47157 * 59.86387 * 1 2 3 25 25 H 1.09001 * 109.47011 * 179.86874 * 1 2 3 26 26 H 1.08999 * 109.46939 * 240.00526 * 2 1 3 27 27 H 1.08993 * 109.46976 * 119.99892 * 2 1 3 28 28 H 0.97003 * 119.99786 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46971 * 35.42145 * 12 3 2 30 30 H 1.08998 * 109.47320 * 155.41781 * 12 3 2 31 31 H 1.07996 * 119.90316 * 359.97438 * 14 13 12 32 32 H 1.08000 * 120.07067 * 180.27566 * 15 14 13 33 33 H 0.96704 * 117.00144 * 179.97438 * 19 17 16 34 34 H 1.07999 * 119.93411 * 180.02562 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3538 1.9888 1.1805 5 1 2.8520 1.4252 1.9555 6 6 2.0482 3.3276 1.3833 7 7 2.8243 4.0720 2.1422 8 14 0.5357 4.0726 0.5794 9 1 -0.6085 4.0102 1.5240 10 1 0.8095 5.4889 0.2265 11 1 0.2035 3.3111 -0.6515 12 6 2.1479 2.1124 -1.2628 13 6 3.4748 1.7865 -1.8982 14 6 4.5856 2.5604 -1.6089 15 6 5.8046 2.2652 -2.1817 16 6 5.9155 1.1887 -3.0649 17 6 7.2162 0.8704 -3.6868 18 8 7.3092 -0.0662 -4.4548 19 8 8.2998 1.6186 -3.4025 20 6 4.7893 0.4148 -3.3574 21 17 4.9147 -0.9251 -4.4540 22 6 3.5758 0.7191 -2.7715 23 1 -0.3633 0.5117 0.8912 24 1 -0.3633 0.5159 -0.8887 25 1 -0.3633 -1.0277 -0.0024 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 2.6106 5.0075 2.2842 29 1 1.3414 1.8210 -1.9358 30 1 2.0908 3.1837 -1.0699 31 1 4.4980 3.3952 -0.9293 32 1 6.6709 2.8675 -1.9512 33 1 9.1294 1.3715 -3.8336 34 1 2.7042 0.1221 -2.9958 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596200344.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:42 Heat of formation + Delta-G solvation = -44.760048 kcal Electronic energy + Delta-G solvation = -19972.597686 eV Core-core repulsion = 16704.313849 eV Total energy + Delta-G solvation = -3268.283837 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26325 -38.76502 -36.56686 -35.95258 -35.84803 -32.17195 -31.90124 -30.55815 -29.34082 -26.56860 -23.98866 -23.29622 -22.41990 -20.96389 -20.08480 -18.03581 -17.44124 -16.96778 -15.66817 -15.55194 -15.27112 -14.92964 -14.50845 -14.24842 -13.75524 -13.38256 -13.23978 -13.05871 -12.78626 -12.27788 -12.01923 -11.69953 -11.46210 -11.40411 -11.35249 -11.13155 -11.03052 -10.82816 -10.57741 -10.30177 -10.12898 -9.83404 -9.68523 -8.72231 -8.63503 -8.45091 -7.01746 -6.23418 -3.53642 0.80911 1.48587 2.28910 2.69846 3.08322 3.24747 3.38267 3.42433 3.89411 4.39356 4.87580 4.92874 5.14308 5.19450 5.29414 5.49493 5.60699 5.74514 5.82730 5.98409 6.10576 6.18748 6.21367 6.28142 6.42937 6.45721 6.50533 6.56582 6.70261 6.94578 6.95240 7.03151 7.84813 7.97098 8.24546 8.81137 9.52812 9.95633 10.91187 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021477 B = 0.005528 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.414379 B = 5063.801049 C = 5918.513463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.589 5.589 4 C -0.276 4.276 5 H 0.077 0.923 6 C 0.047 3.953 7 N -0.875 5.875 8 Si 0.850 3.150 9 H -0.288 1.288 10 H -0.293 1.293 11 H -0.259 1.259 12 C 0.173 3.827 13 C -0.031 4.031 14 C -0.107 4.107 15 C -0.050 4.050 16 C -0.149 4.149 17 C 0.524 3.476 18 O -0.504 6.504 19 O -0.514 6.514 20 C 0.020 3.980 21 Cl -0.050 7.050 22 C -0.126 4.126 23 H 0.055 0.945 24 H 0.042 0.958 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.410 0.590 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.172 -4.263 -10.544 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.016 3.984 3 N -0.310 5.310 4 C -0.404 4.404 5 H 0.095 0.905 6 C -0.156 4.156 7 N -0.513 5.513 8 Si 0.677 3.323 9 H -0.215 1.215 10 H -0.219 1.219 11 H -0.184 1.184 12 C 0.048 3.952 13 C -0.035 4.035 14 C -0.126 4.126 15 C -0.068 4.068 16 C -0.151 4.151 17 C 0.369 3.631 18 O -0.393 6.393 19 O -0.326 6.326 20 C -0.008 4.008 21 Cl -0.021 7.021 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.268 0.732 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.852 -4.377 -10.518 12.026 hybrid contribution -0.272 0.263 -0.582 0.694 sum 3.580 -4.114 -11.100 12.368 Atomic orbital electron populations 1.22320 0.99465 0.99575 1.01594 1.20941 0.91771 0.86235 0.99454 1.44106 1.73941 1.11413 1.01503 1.18716 1.33714 0.94315 0.93636 0.90519 1.25513 0.97165 0.96511 0.96387 1.70023 1.34652 1.06722 1.39917 0.87353 0.86589 0.77996 0.80386 1.21508 1.21938 1.18368 1.20470 0.89517 0.97533 0.87717 1.21442 0.99759 0.92047 0.90253 1.21306 0.91398 1.00912 0.98936 1.21415 0.98524 0.94045 0.92861 1.18623 0.89878 1.01312 1.05326 1.20803 0.84343 0.79292 0.78656 1.90943 1.85575 1.28625 1.34124 1.84578 1.20659 1.58132 1.69199 1.20935 0.93955 0.90963 0.94927 1.98381 1.98249 1.44050 1.61424 1.20906 0.95714 0.99209 0.98702 0.92599 0.93876 0.93952 0.94408 0.92542 0.92447 0.92994 0.91101 0.84001 0.84229 0.73209 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 10.23 37.16 0.38 -2.47 16 2 C 0.14 2.60 6.41 -4.04 -0.03 2.57 16 3 N -0.59 -12.63 2.01 -174.61 -0.35 -12.98 16 4 C -0.28 -7.00 9.77 -15.06 -0.15 -7.15 16 5 H 0.08 2.15 8.06 -52.48 -0.42 1.73 16 6 C 0.05 1.23 5.05 -17.43 -0.09 1.15 16 7 N -0.88 -24.34 13.97 55.49 0.78 -23.56 16 8 Si 0.85 19.77 26.32 -169.99 -4.47 15.29 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.26 -5.64 5.72 56.52 0.32 -5.31 16 12 C 0.17 3.37 3.96 -5.20 -0.02 3.35 16 13 C -0.03 -0.54 5.46 -104.54 -0.57 -1.11 16 14 C -0.11 -1.85 9.68 -39.64 -0.38 -2.23 16 15 C -0.05 -0.77 9.62 -39.17 -0.38 -1.15 16 16 C -0.15 -2.35 5.88 -104.96 -0.62 -2.97 16 17 C 0.52 7.72 8.26 34.57 0.29 8.00 16 18 O -0.50 -8.31 14.76 -19.25 -0.28 -8.59 16 19 O -0.51 -5.79 12.68 -40.54 -0.51 -6.30 16 20 C 0.02 0.31 6.35 -39.05 -0.25 0.07 16 21 Cl -0.05 -0.78 26.03 -51.86 -1.35 -2.13 16 22 C -0.13 -2.02 9.09 -39.60 -0.36 -2.38 16 23 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 27 H 0.06 1.06 7.99 -51.93 -0.42 0.65 16 28 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.05 0.92 7.98 -51.93 -0.41 0.50 16 30 H 0.07 1.48 4.53 -51.93 -0.24 1.24 16 31 H 0.14 2.62 8.06 -52.49 -0.42 2.20 16 32 H 0.14 1.87 7.61 -52.49 -0.40 1.47 16 33 H 0.41 2.59 9.11 45.56 0.42 3.01 16 34 H 0.13 1.94 7.88 -52.49 -0.41 1.52 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -29.08 306.91 -6.92 -36.00 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.18 Total: 1.98 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -2.17 Total: -4.33 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.42 Total: -36.54 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.80 Total: -14.89 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.47 Total: 15.29 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.35 Total: -2.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.08 -6.92 -36.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596200344.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.761 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds