Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48503 * 109.47089 * 270.00185 * 3 2 1 5 5 H 1.48501 * 109.47287 * 30.00030 * 3 2 1 6 6 H 1.48499 * 109.47493 * 149.99898 * 3 2 1 7 7 C 1.37874 * 120.00141 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00384 * 180.02562 * 7 2 1 9 9 C 1.50711 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47247 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.46770 * 180.02562 * 10 9 7 12 12 C 1.50706 * 109.46762 * 179.97438 * 11 10 9 13 13 O 1.20825 * 120.00146 * 0.02562 * 12 11 10 14 14 O 1.34222 * 119.99614 * 179.97438 * 12 11 10 15 15 C 1.45201 * 117.00081 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.47425 * 179.97438 * 15 14 12 17 17 C 1.35310 * 126.65836 * 90.33509 * 16 15 14 18 18 C 1.42298 * 103.92022 * 180.15049 * 17 16 15 19 19 C 1.48243 * 126.94302 * 179.85306 * 18 17 16 20 20 O 1.21413 * 119.99826 * 359.70584 * 19 18 17 21 21 O 1.34644 * 120.00311 * 179.70719 * 19 18 17 22 22 N 1.31007 * 106.11533 * 359.58817 * 18 17 16 23 23 O 1.20903 * 111.43262 * 0.26597 * 22 18 17 24 24 H 0.97001 * 120.00431 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.46539 * 59.99933 * 9 7 2 26 26 H 1.09001 * 109.46604 * 300.00298 * 9 7 2 27 27 H 1.09005 * 109.47136 * 60.00213 * 10 9 7 28 28 H 1.08995 * 109.46946 * 300.00024 * 10 9 7 29 29 H 1.08998 * 109.46862 * 59.99975 * 11 10 9 30 30 H 1.09001 * 109.46757 * 300.00049 * 11 10 9 31 31 H 1.09010 * 109.46985 * 60.00390 * 15 14 12 32 32 H 1.08997 * 109.47486 * 300.00683 * 15 14 12 33 33 H 1.08004 * 128.04134 * 0.02562 * 17 16 15 34 34 H 0.96700 * 117.00385 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0018 13 8 3.6474 -5.9118 -0.0013 14 8 2.0121 -7.3980 -0.0019 15 6 3.0120 -8.4508 -0.0031 16 6 2.3279 -9.7936 -0.0024 17 6 1.9655 -10.5162 -1.0875 18 6 1.3642 -11.6824 -0.5369 19 6 0.7822 -12.8225 -1.2847 20 8 0.7846 -12.8167 -2.4988 21 8 0.2510 -13.8644 -0.6175 22 7 1.4340 -11.5478 0.7643 23 8 1.9653 -10.5065 1.0729 24 1 -0.4851 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6044 0.8895 28 1 2.8719 -3.6043 -0.8905 29 1 0.8538 -5.0445 -0.8914 30 1 0.8532 -5.0450 0.8886 31 1 3.6355 -8.3608 0.8865 32 1 3.6342 -8.3601 -0.8935 33 1 2.0995 -10.2651 -2.1294 34 1 -0.1162 -14.5845 -1.1483 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065005.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = -145.778796 kcal Electronic energy + Delta-G solvation = -20493.642922 eV Core-core repulsion = 16780.269418 eV Total energy + Delta-G solvation = -3713.373504 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.098 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -46.46726 -41.56408 -41.29284 -37.94536 -37.41090 -36.13335 -35.43565 -34.20683 -33.92113 -30.19797 -28.42984 -27.01076 -25.89464 -24.16931 -22.86572 -22.02924 -21.37404 -19.27524 -19.20196 -19.11329 -18.64431 -18.29827 -17.76911 -17.74005 -16.94153 -16.79894 -16.42314 -15.86632 -15.33765 -14.84094 -14.61638 -14.44239 -14.13954 -13.84018 -13.58483 -13.16403 -12.96888 -12.89999 -12.62791 -12.49374 -12.41192 -12.29142 -11.90155 -11.83667 -11.71022 -11.52157 -11.39156 -11.18530 -10.87422 -10.51484 -8.17641 -6.27182 -0.40156 0.11553 1.19072 1.33047 1.42943 1.43383 1.48039 1.54766 1.59747 2.01218 2.44205 2.71468 3.16149 3.36709 3.56039 3.81110 3.83732 4.14414 4.20761 4.24079 4.28761 4.34734 4.62948 4.71970 4.96115 5.09971 5.18088 5.21669 5.28715 5.57357 5.77756 5.90184 6.29210 6.54739 6.71598 6.76201 6.89317 7.41593 8.93806 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.044146 B = 0.002245 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.112660 B =12466.423029 C =12690.946193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.087 4.087 11 C -0.107 4.107 12 C 0.481 3.519 13 O -0.528 6.528 14 O -0.356 6.356 15 C 0.142 3.858 16 C -0.025 4.025 17 C -0.141 4.141 18 C -0.036 4.036 19 C 0.580 3.420 20 O -0.514 6.514 21 O -0.496 6.496 22 N -0.313 5.313 23 O 0.145 5.855 24 H 0.264 0.736 25 H 0.003 0.997 26 H 0.002 0.998 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.211 0.789 34 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.003 -26.200 -1.245 26.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.786 3.214 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.125 4.125 11 C -0.144 4.144 12 C 0.325 3.675 13 O -0.417 6.417 14 O -0.273 6.273 15 C 0.068 3.932 16 C -0.088 4.088 17 C -0.163 4.163 18 C -0.191 4.191 19 C 0.421 3.579 20 O -0.401 6.401 21 O -0.310 6.310 22 N -0.008 5.008 23 O 0.060 5.940 24 H 0.072 0.928 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.151 0.849 33 H 0.228 0.772 34 H 0.308 0.692 Dipole moment (debyes) X Y Z Total from point charges 2.937 -26.645 -0.391 26.809 hybrid contribution 0.142 0.682 -1.007 1.224 sum 3.078 -25.963 -1.398 26.183 Atomic orbital electron populations 1.70065 1.07531 1.27729 1.51716 1.25904 0.95785 1.03103 0.94880 0.85511 0.78676 0.78805 0.78450 1.19840 1.20721 1.19065 1.21696 0.93499 0.92596 1.50425 0.92602 1.19035 0.94304 0.92278 0.95824 1.21285 0.97858 0.91972 1.01363 1.21537 0.97137 0.88515 1.07228 1.24024 0.89400 0.83146 0.70912 1.90675 1.19246 1.85291 1.46478 1.86558 1.40824 1.15548 1.84415 1.21345 0.87510 0.76627 1.07720 1.23936 1.03154 0.96629 0.85047 1.22799 0.99396 0.91185 1.02920 1.22492 1.08025 0.98289 0.90327 1.19001 0.74136 0.80692 0.84039 1.90948 1.55105 1.79404 1.14643 1.84555 1.70461 1.30884 1.45104 1.74381 1.09542 1.01137 1.15767 1.84854 1.53314 1.21976 1.33822 0.92761 0.97876 0.97925 0.93064 0.92975 0.86196 0.86304 0.86881 0.84920 0.77245 0.69233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.54 -30.52 9.11 25.60 0.23 -30.28 16 8 H 0.06 3.06 7.74 -2.91 -0.02 3.04 16 9 C 0.02 1.13 4.97 29.85 0.15 1.28 16 10 C -0.09 -3.40 4.44 30.59 0.14 -3.26 16 11 C -0.11 -3.06 5.81 29.85 0.17 -2.88 16 12 C 0.48 12.71 7.96 71.24 0.57 13.28 16 13 O -0.53 -16.67 15.73 21.97 0.35 -16.32 16 14 O -0.36 -7.51 10.20 -51.34 -0.52 -8.04 16 15 C 0.14 2.09 6.02 71.24 0.43 2.52 16 16 C -0.03 -0.38 7.11 25.01 0.18 -0.21 16 17 C -0.14 -2.12 10.92 22.60 0.25 -1.87 16 18 C -0.04 -0.67 7.24 42.94 0.31 -0.36 16 19 C 0.58 10.10 8.36 70.48 0.59 10.69 16 20 O -0.51 -10.88 17.74 20.12 0.36 -10.53 16 21 O -0.50 -6.02 13.44 -55.53 -0.75 -6.76 16 22 N -0.31 -6.37 12.12 -49.54 -0.60 -6.97 16 23 O 0.15 2.65 11.18 71.90 0.80 3.45 16 24 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 25 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.05 2.06 8.10 -2.38 -0.02 2.04 16 28 H 0.05 2.08 8.10 -2.39 -0.02 2.06 16 29 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.11 1.46 8.13 -2.38 -0.02 1.44 16 32 H 0.13 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.21 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.44 0.55 9.11 -74.06 -0.67 -0.12 16 Total: -1.00 -72.60 320.21 5.90 -66.70 By element: Atomic # 1 Polarization: -2.36 SS G_CDS: 0.47 Total: -1.88 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 3.47 Total: -10.57 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.32 Total: -61.99 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: 0.24 Total: -38.19 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -72.60 5.90 -66.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065005.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.076 kcal (2) G-P(sol) polarization free energy of solvation -72.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds