Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47429 * 2 1 4 4 C 1.50697 * 109.47346 * 239.99446 * 2 1 3 5 5 H 1.07994 * 120.00519 * 268.42198 * 4 2 1 6 6 C 1.37880 * 119.99992 * 88.41235 * 4 2 1 7 7 N 1.31515 * 119.99746 * 353.34731 * 6 4 2 8 8 Si 1.86801 * 120.00359 * 173.34276 * 6 4 2 9 9 H 1.48497 * 109.47344 * 90.00164 * 8 6 4 10 10 H 1.48504 * 109.46978 * 210.00633 * 8 6 4 11 11 H 1.48502 * 109.46778 * 330.00229 * 8 6 4 12 12 N 1.46909 * 109.47338 * 119.99836 * 2 1 3 13 13 C 1.46902 * 110.99850 * 275.00271 * 12 2 1 14 14 H 1.09002 * 109.47283 * 34.99452 * 13 12 2 15 15 C 1.50701 * 109.46700 * 274.99763 * 13 12 2 16 16 O 1.20823 * 119.99954 * 359.97438 * 15 13 12 17 17 O 1.34226 * 119.99782 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47013 * 154.99915 * 13 12 2 19 19 C 1.38261 * 119.99726 * 39.71808 * 18 13 12 20 20 C 1.38216 * 120.02814 * 179.76834 * 19 18 13 21 21 C 1.38238 * 120.01079 * 0.50763 * 20 19 18 22 22 C 1.38322 * 119.98855 * 359.75092 * 21 20 19 23 23 Cl 1.73605 * 120.01714 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99057 * 219.99838 * 18 13 12 25 25 H 1.09001 * 109.47010 * 59.39103 * 1 2 3 26 26 H 1.08999 * 109.47344 * 179.39522 * 1 2 3 27 27 H 1.09003 * 109.47481 * 299.39132 * 1 2 3 28 28 H 0.97005 * 120.00317 * 354.49154 * 7 6 4 29 29 H 1.00900 * 110.99404 * 38.94790 * 12 2 1 30 30 H 0.96700 * 116.99858 * 179.97438 * 17 15 13 31 31 H 1.07998 * 119.98375 * 0.02562 * 19 18 13 32 32 H 1.08002 * 119.99739 * 180.25694 * 20 19 18 33 33 H 1.08006 * 120.00295 * 179.72011 * 21 20 19 34 34 H 1.08000 * 120.00476 * 359.97438 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.2366 -1.7704 -1.1963 6 6 2.2309 -0.0074 -2.3997 7 7 1.8599 1.2517 -2.4809 8 14 3.0271 -0.8431 -3.8684 9 1 1.9765 -1.4658 -4.7132 10 1 3.7723 0.1633 -4.6666 11 1 3.9655 -1.8912 -3.3928 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.3911 0.9695 2.3227 16 8 4.1897 0.7605 1.4404 17 8 3.6699 1.8662 3.2818 18 6 1.9786 -0.5675 3.6259 19 6 2.6283 -1.7824 3.7425 20 6 2.5374 -2.5054 4.9170 21 6 1.7882 -2.0191 5.9721 22 6 1.1336 -0.8063 5.8541 23 17 0.1930 -0.1947 7.1789 24 6 1.2292 -0.0804 4.6800 25 1 -0.3633 0.5233 -0.8845 26 1 -0.3634 -1.0276 -0.0108 27 1 -0.3634 0.5044 0.8954 28 1 1.3751 1.6628 -1.7481 29 1 1.4495 -1.4978 1.4101 30 1 4.5219 2.3200 3.2243 31 1 3.2104 -2.1646 2.9171 32 1 3.0485 -3.4524 5.0090 33 1 1.7136 -2.5864 6.8882 34 1 0.7184 0.8666 4.5873 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = -71.922909 kcal Electronic energy + Delta-G solvation = -19989.370879 eV Core-core repulsion = 16719.909171 eV Total energy + Delta-G solvation = -3269.461707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.27554 -39.06825 -36.80999 -36.27990 -35.40823 -33.32545 -31.32399 -30.76287 -28.51650 -26.10375 -24.63901 -22.82616 -22.59637 -20.90161 -20.18701 -17.88236 -17.33936 -16.70373 -16.14925 -15.73329 -15.45139 -14.91956 -14.47019 -14.01573 -13.75132 -13.64600 -13.52003 -13.00050 -12.67700 -12.50050 -11.81444 -11.63344 -11.55187 -11.46622 -11.28877 -11.11393 -11.04823 -10.86019 -10.68412 -10.17963 -10.06213 -9.94488 -9.03814 -8.79059 -8.61862 -8.37106 -7.58048 -6.32155 -4.00335 1.02774 1.12464 1.97832 2.70442 3.25300 3.46927 3.53749 3.58475 3.69187 4.48794 4.57387 4.68060 4.92660 4.96545 5.21556 5.29784 5.35299 5.53851 5.64426 5.68667 5.75015 6.05175 6.24931 6.25344 6.36276 6.41429 6.60474 6.66878 6.83129 6.88037 7.14811 7.67112 8.17783 8.25866 8.40656 8.56246 8.89832 9.68076 11.06005 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.004343 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.592629 B = 6445.694920 C = 6554.116541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.197 3.803 3 H 0.040 0.960 4 C -0.566 4.566 5 H 0.054 0.946 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 1.071 2.929 9 H -0.290 1.290 10 H -0.285 1.285 11 H -0.288 1.288 12 N -0.651 5.651 13 C 0.140 3.860 14 H 0.081 0.919 15 C 0.473 3.527 16 O -0.466 6.466 17 O -0.527 6.527 18 C -0.072 4.072 19 C -0.089 4.089 20 C -0.110 4.110 21 C -0.110 4.110 22 C -0.037 4.037 23 Cl -0.076 7.076 24 C -0.090 4.090 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.340 0.660 30 H 0.403 0.597 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.084 -3.613 17.928 18.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.090 3.910 3 H 0.057 0.943 4 C -0.604 4.604 5 H 0.072 0.928 6 C -0.183 4.183 7 N -0.550 5.550 8 Si 0.900 3.100 9 H -0.217 1.217 10 H -0.211 1.211 11 H -0.214 1.214 12 N -0.284 5.284 13 C 0.028 3.972 14 H 0.098 0.902 15 C 0.311 3.689 16 O -0.349 6.349 17 O -0.339 6.339 18 C -0.073 4.073 19 C -0.108 4.108 20 C -0.128 4.128 21 C -0.128 4.128 22 C -0.064 4.064 23 Cl -0.047 7.047 24 C -0.110 4.110 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.077 0.923 29 H 0.160 0.840 30 H 0.261 0.739 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.090 -3.479 16.076 16.448 hybrid contribution -1.083 0.287 1.870 2.180 sum -1.174 -3.193 17.946 18.266 Atomic orbital electron populations 1.22642 1.01307 1.00072 0.99074 1.19483 0.88632 0.95259 0.87608 0.94255 1.21698 1.47426 0.96782 0.94523 0.92791 1.25786 0.96039 0.95597 1.00925 1.70781 1.36746 1.12403 1.35107 0.83527 0.76327 0.75137 0.75036 1.21735 1.21063 1.21377 1.60657 1.58613 1.07990 1.01159 1.19794 0.92144 0.94817 0.90436 0.90150 1.23369 0.89360 0.77502 0.78656 1.90786 1.47820 1.61745 1.34537 1.84519 1.43683 1.53557 1.52164 1.19604 0.98001 0.95530 0.94181 1.21359 0.97687 0.93584 0.98127 1.21138 0.98778 1.00241 0.92630 1.21068 0.97326 0.94544 0.99908 1.20801 0.99248 0.96275 0.90065 1.98362 1.71741 1.87635 1.46969 1.20930 0.98949 0.99886 0.91191 0.92508 0.93792 0.96595 0.92307 0.83970 0.73895 0.83880 0.84848 0.85074 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.70 9.04 37.15 0.34 -3.37 16 2 C 0.20 4.79 1.85 -68.87 -0.13 4.66 16 3 H 0.04 1.07 6.48 -51.93 -0.34 0.74 16 4 C -0.57 -15.72 8.64 -34.44 -0.30 -16.02 16 5 H 0.05 1.51 7.82 -52.49 -0.41 1.10 16 6 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 7 N -0.91 -27.56 13.55 55.43 0.75 -26.81 16 8 Si 1.07 25.71 29.91 -169.99 -5.08 20.63 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.65 -13.26 4.95 -103.39 -0.51 -13.78 16 13 C 0.14 2.43 2.54 -70.02 -0.18 2.25 16 14 H 0.08 1.37 6.97 -51.93 -0.36 1.00 16 15 C 0.47 8.80 7.36 36.01 0.26 9.06 16 16 O -0.47 -10.75 17.02 -18.75 -0.32 -11.07 16 17 O -0.53 -7.63 13.34 -39.25 -0.52 -8.16 16 18 C -0.07 -1.03 4.64 -104.63 -0.49 -1.52 16 19 C -0.09 -1.19 9.00 -39.58 -0.36 -1.54 16 20 C -0.11 -1.18 10.05 -39.59 -0.40 -1.58 16 21 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 22 C -0.04 -0.44 6.32 -39.50 -0.25 -0.69 16 23 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 24 C -0.09 -1.16 9.45 -39.55 -0.37 -1.53 16 25 H 0.06 1.33 7.67 -51.93 -0.40 0.93 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.02 0.29 7.42 -51.93 -0.39 -0.10 16 28 H 0.27 7.94 6.37 -40.82 -0.26 7.68 16 29 H 0.34 6.32 7.73 -39.29 -0.30 6.01 16 30 H 0.40 4.15 9.10 45.56 0.41 4.57 16 31 H 0.14 2.04 7.71 -52.49 -0.40 1.64 16 32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 312.76 15.07 4.71 4.71 Total: -1.00 -32.79 312.76 -7.76 -40.55 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -2.93 Total: 7.57 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.35 Total: -11.33 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: 0.24 Total: -40.58 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: -0.84 Total: -19.23 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -5.08 Total: 20.63 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.79 -7.76 -40.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.375 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds