Wall clock time and date at job start Tue Mar 31 2020 05:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.47429 * 2 1 4 4 C 1.50697 * 109.47346 * 239.99446 * 2 1 3 5 5 H 1.07994 * 120.00519 * 268.42198 * 4 2 1 6 6 C 1.37880 * 119.99992 * 88.41235 * 4 2 1 7 7 N 1.31515 * 119.99746 * 353.34731 * 6 4 2 8 8 Si 1.86801 * 120.00359 * 173.34276 * 6 4 2 9 9 H 1.48497 * 109.47344 * 90.00164 * 8 6 4 10 10 H 1.48504 * 109.46978 * 210.00633 * 8 6 4 11 11 H 1.48502 * 109.46778 * 330.00229 * 8 6 4 12 12 N 1.46909 * 109.47338 * 119.99836 * 2 1 3 13 13 C 1.46902 * 110.99850 * 275.00271 * 12 2 1 14 14 H 1.09002 * 109.47283 * 34.99452 * 13 12 2 15 15 C 1.50701 * 109.46700 * 274.99763 * 13 12 2 16 16 O 1.20823 * 119.99954 * 359.97438 * 15 13 12 17 17 O 1.34226 * 119.99782 * 180.02562 * 15 13 12 18 18 C 1.50696 * 109.47013 * 154.99915 * 13 12 2 19 19 C 1.38261 * 119.99726 * 39.71808 * 18 13 12 20 20 C 1.38216 * 120.02814 * 179.76834 * 19 18 13 21 21 C 1.38238 * 120.01079 * 0.50763 * 20 19 18 22 22 C 1.38322 * 119.98855 * 359.75092 * 21 20 19 23 23 Cl 1.73605 * 120.01714 * 180.02562 * 22 21 20 24 24 C 1.38199 * 119.99057 * 219.99838 * 18 13 12 25 25 H 1.09001 * 109.47010 * 59.39103 * 1 2 3 26 26 H 1.08999 * 109.47344 * 179.39522 * 1 2 3 27 27 H 1.09003 * 109.47481 * 299.39132 * 1 2 3 28 28 H 0.97005 * 120.00317 * 354.49154 * 7 6 4 29 29 H 1.00900 * 110.99404 * 38.94790 * 12 2 1 30 30 H 0.96700 * 116.99858 * 179.97438 * 17 15 13 31 31 H 1.07998 * 119.98375 * 0.02562 * 19 18 13 32 32 H 1.08002 * 119.99739 * 180.25694 * 20 19 18 33 33 H 1.08006 * 120.00295 * 179.72011 * 21 20 19 34 34 H 1.08000 * 120.00476 * 359.97438 * 24 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.2366 -1.7704 -1.1963 6 6 2.2309 -0.0074 -2.3997 7 7 1.8599 1.2517 -2.4809 8 14 3.0271 -0.8431 -3.8684 9 1 1.9765 -1.4658 -4.7132 10 1 3.7723 0.1633 -4.6666 11 1 3.9655 -1.8912 -3.3928 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2227 2.3469 14 1 1.2576 0.9330 2.2907 15 6 3.3911 0.9695 2.3227 16 8 4.1897 0.7605 1.4404 17 8 3.6699 1.8662 3.2818 18 6 1.9786 -0.5675 3.6259 19 6 2.6283 -1.7824 3.7425 20 6 2.5374 -2.5054 4.9170 21 6 1.7882 -2.0191 5.9721 22 6 1.1336 -0.8063 5.8541 23 17 0.1930 -0.1947 7.1789 24 6 1.2292 -0.0804 4.6800 25 1 -0.3633 0.5233 -0.8845 26 1 -0.3634 -1.0276 -0.0108 27 1 -0.3634 0.5044 0.8954 28 1 1.3751 1.6628 -1.7481 29 1 1.4495 -1.4978 1.4101 30 1 4.5219 2.3200 3.2243 31 1 3.2104 -2.1646 2.9171 32 1 3.0485 -3.4524 5.0090 33 1 1.7136 -2.5864 6.8882 34 1 0.7184 0.8666 4.5873 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059428.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:49 Heat of formation + Delta-G solvation = -93.862926 kcal Electronic energy + Delta-G solvation = -19990.322269 eV Core-core repulsion = 16719.909171 eV Total energy + Delta-G solvation = -3270.413098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61350 -40.19408 -38.17293 -37.39843 -36.91856 -35.05127 -32.82859 -31.77823 -29.97920 -27.61788 -26.71367 -23.91597 -23.67954 -22.57455 -21.64467 -19.28406 -19.01268 -18.08293 -17.51871 -16.93758 -16.76098 -16.13272 -15.83831 -15.70877 -15.37913 -14.77211 -14.61750 -14.57488 -14.12036 -13.83446 -13.51220 -13.29104 -12.96020 -12.61963 -12.57071 -12.53000 -12.46044 -12.39864 -11.99061 -11.92732 -11.85629 -11.57596 -10.68861 -10.50529 -9.97770 -9.72550 -9.26240 -8.56348 -6.24216 0.06271 0.19562 1.07565 1.26048 1.53352 1.63260 1.80696 1.97915 2.55612 2.62400 3.16078 3.36174 3.49542 3.83390 4.05035 4.12710 4.23701 4.34336 4.40095 4.47910 4.60266 4.63267 4.72293 4.84003 4.99117 5.15345 5.31658 5.35548 5.43438 5.59555 5.74590 5.82217 6.18716 6.41433 6.57450 6.70927 7.05054 7.51413 8.82513 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.025739 B = 0.004343 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.592629 B = 6445.694920 C = 6554.116541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.202 3.798 3 H 0.004 0.996 4 C -0.575 4.575 5 H 0.047 0.953 6 C -0.033 4.033 7 N -0.942 5.942 8 Si 1.114 2.886 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.658 5.658 13 C 0.142 3.858 14 H 0.085 0.915 15 C 0.479 3.521 16 O -0.522 6.522 17 O -0.510 6.510 18 C -0.084 4.084 19 C -0.101 4.101 20 C -0.100 4.100 21 C -0.100 4.100 22 C -0.042 4.042 23 Cl -0.066 7.066 24 C -0.094 4.094 25 H 0.032 0.968 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.255 0.745 29 H 0.350 0.650 30 H 0.423 0.577 31 H 0.128 0.872 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.444 -4.964 20.045 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.094 3.906 3 H 0.022 0.978 4 C -0.614 4.614 5 H 0.065 0.935 6 C -0.230 4.230 7 N -0.580 5.580 8 Si 0.936 3.064 9 H -0.196 1.196 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.292 5.292 13 C 0.030 3.970 14 H 0.102 0.898 15 C 0.319 3.681 16 O -0.409 6.409 17 O -0.324 6.324 18 C -0.085 4.085 19 C -0.120 4.120 20 C -0.118 4.118 21 C -0.118 4.118 22 C -0.068 4.068 23 Cl -0.037 7.037 24 C -0.113 4.113 25 H 0.051 0.949 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.172 0.828 30 H 0.284 0.716 31 H 0.146 0.854 32 H 0.180 0.820 33 H 0.178 0.822 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.466 -4.828 18.248 18.882 hybrid contribution -0.964 0.719 1.424 1.864 sum -1.429 -4.109 19.672 20.148 Atomic orbital electron populations 1.22413 0.99193 1.00788 0.99328 1.19212 0.90002 0.93121 0.88266 0.97808 1.22076 1.46671 0.96647 0.96007 0.93488 1.27092 0.96363 0.95637 1.03907 1.70885 1.38598 1.13487 1.35069 0.82980 0.76229 0.74527 0.72615 1.19563 1.21430 1.20279 1.60301 1.58781 1.08704 1.01383 1.19751 0.91576 0.94744 0.90883 0.89769 1.23651 0.89192 0.77221 0.78034 1.90766 1.49677 1.63698 1.36743 1.84465 1.45075 1.52495 1.50348 1.19303 1.00042 0.95975 0.93208 1.21335 0.97974 0.93746 0.98930 1.21409 0.98192 1.00811 0.91385 1.21421 0.95751 0.93945 1.00683 1.20911 0.99369 0.96614 0.89952 1.98371 1.71473 1.87612 1.46233 1.20942 0.98778 1.00322 0.91273 0.94879 0.92668 0.93691 0.93471 0.82827 0.71598 0.85443 0.81973 0.82246 0.84306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.81 9.04 71.98 0.65 -6.16 16 2 C 0.20 10.02 1.85 44.16 0.08 10.11 16 3 H 0.00 0.22 6.48 -2.39 -0.02 0.20 16 4 C -0.58 -32.60 8.64 25.60 0.22 -32.38 16 5 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 6 C -0.03 -1.90 5.45 84.66 0.46 -1.44 16 7 N -0.94 -58.47 13.55 21.45 0.29 -58.18 16 8 Si 1.11 52.28 29.91 68.60 2.05 54.33 16 9 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 N -0.66 -27.07 4.95 -481.03 -2.38 -29.45 16 13 C 0.14 4.92 2.54 43.42 0.11 5.03 16 14 H 0.08 2.84 6.97 -2.39 -0.02 2.82 16 15 C 0.48 17.96 7.36 71.24 0.52 18.49 16 16 O -0.52 -24.83 17.02 21.97 0.37 -24.45 16 17 O -0.51 -14.36 13.34 -51.38 -0.69 -15.04 16 18 C -0.08 -2.31 4.64 -19.87 -0.09 -2.40 16 19 C -0.10 -2.55 9.00 22.27 0.20 -2.35 16 20 C -0.10 -1.85 10.05 22.26 0.22 -1.62 16 21 C -0.10 -1.72 9.83 22.29 0.22 -1.50 16 22 C -0.04 -0.86 6.32 22.32 0.14 -0.72 16 23 Cl -0.07 -1.23 28.96 -2.72 -0.08 -1.31 16 24 C -0.09 -2.22 9.45 22.29 0.21 -2.01 16 25 H 0.03 1.56 7.67 -2.39 -0.02 1.54 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.65 7.42 -2.39 -0.02 1.63 16 28 H 0.26 15.88 6.37 -92.70 -0.59 15.29 16 29 H 0.35 12.93 7.73 -89.69 -0.69 12.24 16 30 H 0.42 8.28 9.10 -74.06 -0.67 7.60 16 31 H 0.13 3.60 7.71 -2.91 -0.02 3.57 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.14 3.07 8.04 -2.91 -0.02 3.05 16 Total: -1.00 -72.49 312.76 2.48 -70.01 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -0.04 Total: 21.07 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 2.95 Total: -16.96 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.09 Total: -87.63 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.31 Total: -39.50 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 2.05 Total: 54.33 kcal Atomic # 17 Polarization: -1.23 SS G_CDS: -0.08 Total: -1.31 kcal Total: -72.49 2.48 -70.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059428.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.858 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds