Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 H 1.09000 * 109.46996 * 34.99593 * 13 12 2 15 15 C 1.50703 * 109.46955 * 274.99879 * 13 12 2 16 16 O 1.20828 * 119.99972 * 0.02562 * 15 13 12 17 17 O 1.34222 * 120.00141 * 179.97438 * 15 13 12 18 18 C 1.50693 * 109.47081 * 155.00134 * 13 12 2 19 19 C 1.38237 * 120.01154 * 25.00025 * 18 13 12 20 20 C 1.38216 * 120.01349 * 180.02562 * 19 18 13 21 21 C 1.38264 * 120.02748 * 359.97438 * 20 19 18 22 22 C 1.38192 * 120.01414 * 359.97438 * 21 20 19 23 23 C 1.38338 * 120.00228 * 204.72646 * 18 13 12 24 24 Cl 1.73596 * 120.01522 * 359.97378 * 23 18 13 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00382 * 208.94825 * 12 2 1 30 30 H 0.96703 * 117.00108 * 180.02562 * 17 15 13 31 31 H 1.07998 * 119.98800 * 0.02562 * 19 18 13 32 32 H 1.07999 * 119.98569 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.98956 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.00450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 1 2.3649 1.2175 -2.0030 15 6 0.7325 0.2856 -3.0135 16 8 -0.1878 -0.3645 -2.5771 17 8 0.5520 1.0649 -4.0913 18 6 3.1066 -0.2779 -3.3327 19 6 3.4300 -1.6213 -3.3719 20 6 4.3696 -2.0801 -4.2757 21 6 4.9863 -1.1960 -5.1416 22 6 4.6630 0.1471 -5.1041 23 6 3.7191 0.6064 -4.2026 24 17 3.3078 2.2924 -4.1594 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.9153 -0.5190 4.4376 29 1 2.9173 -1.1205 -1.0286 30 1 -0.3316 1.0730 -4.4843 31 1 2.9483 -2.3124 -2.6960 32 1 4.6223 -3.1297 -4.3056 33 1 5.7207 -1.5551 -5.8472 34 1 5.1445 0.8375 -5.7808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = -50.162251 kcal Electronic energy + Delta-G solvation = -20405.739548 eV Core-core repulsion = 17137.221453 eV Total energy + Delta-G solvation = -3268.518095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.37441 -39.09175 -36.54074 -36.36113 -35.38726 -33.24221 -31.48020 -30.80155 -28.96165 -26.45193 -24.87743 -22.71809 -22.59819 -20.78814 -19.70095 -17.97075 -17.33186 -16.80568 -16.24821 -16.04210 -15.37989 -15.02844 -14.74459 -13.87869 -13.75870 -13.57296 -13.48969 -13.19274 -12.66676 -12.65535 -12.21726 -11.74787 -11.50689 -11.47350 -11.22804 -11.07288 -10.79411 -10.70278 -10.59730 -10.32425 -9.98262 -9.38559 -9.00214 -8.95054 -8.71453 -8.62292 -7.81312 -6.12344 -4.12658 1.03774 1.17848 2.14381 2.60270 3.22580 3.28612 3.36943 3.38879 3.62105 4.37677 4.49404 4.66290 4.84530 4.98391 5.20267 5.22496 5.37561 5.48383 5.58878 5.65583 5.85912 6.10328 6.27547 6.33716 6.42602 6.61757 6.69723 6.73041 6.77396 6.94996 7.43273 7.48086 7.76427 8.12087 8.31367 8.51867 8.89832 9.49304 11.00274 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.005859 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.273885 B = 4777.584811 C = 5163.738667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 H 0.003 0.997 4 C -0.521 4.521 5 H 0.081 0.919 6 C 0.075 3.925 7 N -0.896 5.896 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.297 1.297 11 H -0.270 1.270 12 N -0.654 5.654 13 C 0.136 3.864 14 H 0.090 0.910 15 C 0.477 3.523 16 O -0.473 6.473 17 O -0.517 6.517 18 C -0.081 4.081 19 C -0.085 4.085 20 C -0.118 4.118 21 C -0.107 4.107 22 C -0.117 4.117 23 C -0.016 4.016 24 Cl -0.059 7.059 25 H 0.029 0.971 26 H 0.038 0.962 27 H 0.060 0.940 28 H 0.265 0.735 29 H 0.355 0.645 30 H 0.401 0.599 31 H 0.149 0.851 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.062 2.963 -19.133 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 H 0.020 0.980 4 C -0.559 4.559 5 H 0.099 0.901 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.721 3.279 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.195 1.195 12 N -0.290 5.290 13 C 0.024 3.976 14 H 0.107 0.893 15 C 0.316 3.684 16 O -0.358 6.358 17 O -0.328 6.328 18 C -0.083 4.083 19 C -0.103 4.103 20 C -0.136 4.136 21 C -0.125 4.125 22 C -0.136 4.136 23 C -0.043 4.043 24 Cl -0.030 7.030 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.178 0.822 30 H 0.258 0.742 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.547 2.664 -18.762 19.279 hybrid contribution -0.534 1.478 0.259 1.593 sum 3.013 4.142 -18.503 19.199 Atomic orbital electron populations 1.22233 0.97679 1.01754 0.97710 1.19715 0.92578 0.92620 0.87658 0.97997 1.20998 1.32636 1.13843 0.88384 0.90148 1.24880 0.95523 0.96710 0.95686 1.69879 1.45300 1.40238 0.97938 0.86806 0.80882 0.83490 0.76707 1.20396 1.22506 1.19495 1.60249 1.33399 1.31447 1.03921 1.19895 0.87132 0.98788 0.91801 0.89279 1.23252 0.91084 0.76189 0.77826 1.90705 1.43105 1.40781 1.61180 1.84610 1.39798 1.64610 1.43755 1.19526 0.97852 0.93754 0.97132 1.21263 0.96500 0.94369 0.98146 1.21276 0.96509 1.00260 0.95583 1.21140 0.99699 0.92554 0.99101 1.20985 0.97541 0.96400 0.98674 1.20808 0.98925 0.85719 0.98859 1.98375 1.92844 1.14112 1.97657 0.95219 0.94360 0.92059 0.92500 0.82248 0.74165 0.83350 0.85146 0.85219 0.84979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 7.72 37.16 0.29 -2.99 16 2 C 0.18 4.38 2.19 -68.87 -0.15 4.23 16 3 H 0.00 0.06 6.48 -51.93 -0.34 -0.27 16 4 C -0.52 -14.47 9.17 -34.44 -0.32 -14.78 16 5 H 0.08 2.37 7.86 -52.49 -0.41 1.96 16 6 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 7 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 8 Si 0.89 22.44 24.37 -169.99 -4.14 18.30 16 9 H -0.28 -6.91 6.88 56.52 0.39 -6.52 16 10 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.27 -6.57 6.52 56.52 0.37 -6.20 16 12 N -0.65 -13.25 5.08 -103.40 -0.53 -13.78 16 13 C 0.14 2.36 2.25 -70.01 -0.16 2.20 16 14 H 0.09 1.60 6.42 -51.93 -0.33 1.27 16 15 C 0.48 8.18 6.95 36.01 0.25 8.43 16 16 O -0.47 -9.49 13.77 -18.75 -0.26 -9.75 16 17 O -0.52 -6.87 11.99 -39.24 -0.47 -7.34 16 18 C -0.08 -1.19 4.86 -104.59 -0.51 -1.70 16 19 C -0.08 -1.13 8.86 -39.59 -0.35 -1.48 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 22 C -0.12 -1.26 9.83 -39.55 -0.39 -1.65 16 23 C -0.02 -0.21 6.25 -39.49 -0.25 -0.46 16 24 Cl -0.06 -0.77 26.14 -51.86 -1.36 -2.13 16 25 H 0.03 0.73 3.29 -51.93 -0.17 0.56 16 26 H 0.04 0.86 5.07 -51.93 -0.26 0.59 16 27 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.35 6.89 6.76 -39.29 -0.27 6.62 16 30 H 0.40 3.57 9.10 45.56 0.41 3.99 16 31 H 0.15 2.06 6.97 -52.49 -0.37 1.70 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 292.01 15.07 4.40 4.40 Total: -1.00 -32.45 292.01 -6.66 -39.11 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -2.61 Total: 6.81 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -2.47 Total: -9.22 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.25 Total: -40.19 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.73 Total: -17.08 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.14 Total: 18.30 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.36 Total: -2.13 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.45 -6.66 -39.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.057 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds