Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47269 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99756 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99985 * 180.27663 * 6 4 2 8 8 Si 1.86800 * 119.99777 * 0.28166 * 6 4 2 9 9 H 1.48498 * 109.47109 * 89.99834 * 8 6 4 10 10 H 1.48507 * 109.46754 * 209.99574 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99405 * 8 6 4 12 12 N 1.46895 * 109.47260 * 239.99238 * 2 1 3 13 13 C 1.46908 * 110.99742 * 85.00495 * 12 2 1 14 14 H 1.09000 * 109.46996 * 34.99593 * 13 12 2 15 15 C 1.50703 * 109.46955 * 274.99879 * 13 12 2 16 16 O 1.20828 * 119.99972 * 0.02562 * 15 13 12 17 17 O 1.34222 * 120.00141 * 179.97438 * 15 13 12 18 18 C 1.50693 * 109.47081 * 155.00134 * 13 12 2 19 19 C 1.38237 * 120.01154 * 25.00025 * 18 13 12 20 20 C 1.38216 * 120.01349 * 180.02562 * 19 18 13 21 21 C 1.38264 * 120.02748 * 359.97438 * 20 19 18 22 22 C 1.38192 * 120.01414 * 359.97438 * 21 20 19 23 23 C 1.38338 * 120.00228 * 204.72646 * 18 13 12 24 24 Cl 1.73596 * 120.01522 * 359.97378 * 23 18 13 25 25 H 1.09001 * 109.47094 * 300.00451 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00477 * 1 2 3 27 27 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 28 28 H 0.96996 * 119.99730 * 180.02562 * 7 6 4 29 29 H 1.00896 * 111.00382 * 208.94825 * 12 2 1 30 30 H 0.96703 * 117.00108 * 180.02562 * 17 15 13 31 31 H 1.07998 * 119.98800 * 0.02562 * 19 18 13 32 32 H 1.07999 * 119.98569 * 179.97438 * 20 19 18 33 33 H 1.07996 * 119.98956 * 179.97438 * 21 20 19 34 34 H 1.07997 * 120.00450 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.7039 -0.2359 2.4828 7 7 2.1467 -0.8526 3.5566 8 14 0.6299 1.2829 2.6540 9 1 -0.7974 0.8766 2.7062 10 1 0.9857 2.0024 3.9035 11 1 0.8478 2.1772 1.4887 12 7 2.0196 -0.6926 -1.1993 13 6 2.0825 0.2224 -2.3469 14 1 2.3649 1.2175 -2.0030 15 6 0.7325 0.2856 -3.0135 16 8 -0.1878 -0.3645 -2.5771 17 8 0.5520 1.0649 -4.0913 18 6 3.1066 -0.2779 -3.3327 19 6 3.4300 -1.6213 -3.3719 20 6 4.3696 -2.0801 -4.2757 21 6 4.9863 -1.1960 -5.1416 22 6 4.6630 0.1471 -5.1041 23 6 3.7191 0.6064 -4.2026 24 17 3.3078 2.2924 -4.1594 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 1.9153 -0.5190 4.4376 29 1 2.9173 -1.1205 -1.0286 30 1 -0.3316 1.0730 -4.4843 31 1 2.9483 -2.3124 -2.6960 32 1 4.6223 -3.1297 -4.3056 33 1 5.7207 -1.5551 -5.8472 34 1 5.1445 0.8375 -5.7808 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059746.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = -73.365763 kcal Electronic energy + Delta-G solvation = -20406.745727 eV Core-core repulsion = 17137.221453 eV Total energy + Delta-G solvation = -3269.524274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.076 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63520 -40.13525 -38.02645 -37.35506 -36.77529 -34.99871 -33.23279 -31.70172 -30.42215 -27.91665 -26.92279 -23.75587 -23.64041 -22.25139 -21.29468 -19.27124 -18.94948 -18.34026 -17.54813 -17.30839 -16.65601 -16.50269 -15.93423 -15.34307 -15.20141 -15.01816 -14.69435 -14.60797 -14.15310 -14.11589 -13.86797 -13.13051 -12.91404 -12.76403 -12.50466 -12.41714 -12.35231 -12.23428 -12.20871 -11.70780 -11.64530 -11.30751 -10.96770 -10.81610 -9.90188 -9.65188 -9.46301 -8.34994 -6.39110 0.10691 0.27752 1.16100 1.28414 1.29002 1.30635 1.41136 2.02960 2.27036 2.67914 2.99678 3.24725 3.44065 3.91088 4.02578 4.21328 4.36256 4.41428 4.48194 4.52284 4.65046 4.69871 4.81939 4.94053 4.97211 5.24717 5.35528 5.42917 5.48128 5.54860 5.70084 5.84097 5.87207 6.34405 6.45156 6.70002 7.11688 7.26581 8.80914 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.005859 C = 0.005421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.273885 B = 4777.584811 C = 5163.738667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.189 3.811 3 H 0.000 1.000 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.022 3.978 7 N -0.939 5.939 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.292 1.292 11 H -0.255 1.255 12 N -0.657 5.657 13 C 0.135 3.865 14 H 0.084 0.916 15 C 0.485 3.515 16 O -0.510 6.510 17 O -0.502 6.502 18 C -0.102 4.102 19 C -0.102 4.102 20 C -0.114 4.114 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.027 4.027 24 Cl -0.064 7.064 25 H 0.024 0.976 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.268 0.732 29 H 0.356 0.644 30 H 0.423 0.577 31 H 0.133 0.867 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.651 3.880 -21.707 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.080 3.920 3 H 0.018 0.982 4 C -0.561 4.561 5 H 0.068 0.932 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.772 3.228 9 H -0.198 1.198 10 H -0.219 1.219 11 H -0.179 1.179 12 N -0.292 5.292 13 C 0.023 3.977 14 H 0.101 0.899 15 C 0.326 3.674 16 O -0.397 6.397 17 O -0.315 6.315 18 C -0.104 4.104 19 C -0.120 4.120 20 C -0.132 4.132 21 C -0.111 4.111 22 C -0.133 4.133 23 C -0.054 4.054 24 Cl -0.035 7.035 25 H 0.043 0.957 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.179 0.821 30 H 0.284 0.716 31 H 0.151 0.849 32 H 0.174 0.826 33 H 0.186 0.814 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.134 3.598 -21.385 22.076 hybrid contribution -0.617 1.119 0.911 1.569 sum 3.517 4.717 -20.474 21.303 Atomic orbital electron populations 1.22137 0.97356 1.00891 0.98208 1.19498 0.92714 0.92103 0.87705 0.98245 1.21258 1.31729 1.12908 0.90157 0.93198 1.25654 0.96910 0.99676 0.95409 1.70000 1.47107 1.42183 0.98566 0.85913 0.79285 0.80304 0.77296 1.19764 1.21928 1.17913 1.60104 1.33640 1.31951 1.03532 1.19850 0.88594 0.97779 0.91454 0.89902 1.23161 0.90428 0.75723 0.78094 1.90690 1.44004 1.42445 1.62608 1.84550 1.41589 1.63064 1.42284 1.19357 0.98497 0.94670 0.97828 1.21257 0.97859 0.93741 0.99186 1.21591 0.95206 1.01881 0.94525 1.21598 0.99191 0.91740 0.98590 1.21356 0.96423 0.97493 0.97998 1.20934 0.99762 0.85295 0.99458 1.98368 1.93003 1.14445 1.97705 0.95720 0.92733 0.93634 0.92288 0.82147 0.71639 0.84931 0.82629 0.81365 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.14 7.72 71.98 0.56 -5.58 16 2 C 0.19 9.15 2.19 44.17 0.10 9.25 16 3 H 0.00 0.01 6.48 -2.39 -0.02 -0.01 16 4 C -0.52 -29.82 9.17 25.60 0.23 -29.59 16 5 H 0.05 3.08 7.86 -2.91 -0.02 3.05 16 6 C 0.02 1.30 5.45 84.66 0.46 1.76 16 7 N -0.94 -58.34 13.96 21.45 0.30 -58.04 16 8 Si 0.94 46.16 24.37 68.60 1.67 47.83 16 9 H -0.27 -12.95 6.88 99.48 0.68 -12.26 16 10 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 11 H -0.25 -11.75 6.52 99.48 0.65 -11.10 16 12 N -0.66 -27.09 5.08 -481.05 -2.45 -29.54 16 13 C 0.14 4.65 2.25 43.42 0.10 4.75 16 14 H 0.08 2.96 6.42 -2.39 -0.02 2.94 16 15 C 0.49 16.21 6.95 71.24 0.49 16.70 16 16 O -0.51 -20.22 13.77 21.96 0.30 -19.92 16 17 O -0.50 -12.42 11.99 -51.34 -0.62 -13.04 16 18 C -0.10 -2.91 4.86 -19.84 -0.10 -3.01 16 19 C -0.10 -2.64 8.86 22.26 0.20 -2.44 16 20 C -0.11 -2.12 10.05 22.27 0.22 -1.89 16 21 C -0.09 -1.41 10.05 22.26 0.22 -1.19 16 22 C -0.11 -2.07 9.83 22.29 0.22 -1.85 16 23 C -0.03 -0.67 6.25 22.33 0.14 -0.53 16 24 Cl -0.06 -1.57 26.14 -2.72 -0.07 -1.64 16 25 H 0.02 1.18 3.29 -2.39 -0.01 1.17 16 26 H 0.05 2.42 5.07 -2.39 -0.01 2.40 16 27 H 0.04 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.36 14.33 6.76 -89.70 -0.61 13.73 16 30 H 0.42 6.56 9.10 -74.06 -0.67 5.88 16 31 H 0.13 3.78 6.97 -2.91 -0.02 3.76 16 32 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 34 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -71.00 292.01 1.79 -69.21 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.19 Total: 18.76 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 2.85 Total: -13.62 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -2.15 Total: -87.58 kcal Atomic # 8 Polarization: -32.64 SS G_CDS: -0.31 Total: -32.96 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.83 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.64 kcal Total: -71.00 1.79 -69.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059746.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.157 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds