Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38255 * 119.99576 * 2 1 4 4 C 1.38216 * 119.99790 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99868 * 0.27957 * 4 3 2 6 6 S 1.76202 * 119.99997 * 179.72176 * 5 4 3 7 7 O 1.42094 * 106.40203 * 358.33691 * 6 5 4 8 8 O 1.42101 * 106.40057 * 131.25873 * 6 5 4 9 9 N 1.65600 * 107.21949 * 244.79591 * 6 5 4 10 10 C 1.46494 * 120.00369 * 263.20681 * 9 6 5 11 11 C 1.46498 * 119.99581 * 83.20547 * 9 6 5 12 12 C 1.50705 * 109.47267 * 94.37418 * 11 9 6 13 13 H 1.07998 * 119.99489 * 359.97438 * 12 11 9 14 14 C 1.37874 * 119.99959 * 180.02562 * 12 11 9 15 15 N 1.31516 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99936 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.46989 * 359.97438 * 16 14 12 18 18 H 1.48507 * 109.47213 * 119.99560 * 16 14 12 19 19 H 1.48499 * 109.47420 * 239.99599 * 16 14 12 20 20 C 1.38216 * 119.99894 * 359.52950 * 5 4 3 21 21 C 1.50702 * 119.99982 * 180.20958 * 20 5 4 22 22 C 1.38218 * 120.00091 * 180.02562 * 2 1 3 23 23 H 1.08999 * 109.46606 * 90.00239 * 1 2 3 24 24 H 1.09005 * 109.46777 * 209.99807 * 1 2 3 25 25 H 1.08997 * 109.46858 * 329.99994 * 1 2 3 26 26 H 1.07996 * 120.00574 * 359.97438 * 3 2 1 27 27 H 1.07994 * 120.00272 * 180.02562 * 4 3 2 28 28 H 1.09004 * 109.47457 * 95.07255 * 10 9 6 29 29 H 1.08996 * 109.47450 * 215.07549 * 10 9 6 30 30 H 1.09004 * 109.47319 * 335.07137 * 10 9 6 31 31 H 1.09002 * 109.46936 * 214.37208 * 11 9 6 32 32 H 1.08997 * 109.47875 * 334.36813 * 11 9 6 33 33 H 0.97005 * 120.00315 * 180.02562 * 15 14 12 34 34 H 1.08999 * 109.47324 * 269.28042 * 21 20 5 35 35 H 1.09007 * 109.47031 * 29.28099 * 21 20 5 36 36 H 1.09000 * 109.46900 * 149.27345 * 21 20 5 37 37 H 1.07999 * 119.99823 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0001 -0.0048 6 16 6.0337 0.0001 -0.0115 7 8 6.4348 1.3628 -0.0496 8 8 6.4389 -0.9011 1.0097 9 7 6.5185 -0.6702 -1.4460 10 6 6.8785 -2.0889 -1.5070 11 6 6.5873 0.1555 -2.6542 12 6 7.9894 0.6812 -2.8242 13 1 8.7527 0.4259 -2.1041 14 6 8.2973 1.4887 -3.8985 15 7 7.3676 1.7998 -4.7751 16 14 10.0351 2.1407 -4.1089 17 1 10.8863 1.6494 -2.9958 18 1 10.5887 1.6661 -5.4027 19 1 10.0118 3.6255 -4.0954 20 6 3.5806 -1.1969 -0.0008 21 6 4.3342 -2.5020 -0.0018 22 6 2.1981 -1.1970 -0.0005 23 1 -0.3632 0.0000 -1.0277 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.6583 2.1327 -0.0004 27 1 4.1204 2.1327 0.0010 28 1 6.0139 -2.6698 -1.8284 29 1 7.6933 -2.2268 -2.2177 30 1 7.1962 -2.4260 -0.5203 31 1 6.3173 -0.4466 -3.5217 32 1 5.8943 0.9919 -2.5627 33 1 7.5844 2.3677 -5.5312 34 1 4.5010 -2.8244 -1.0295 35 1 5.2940 -2.3678 0.4973 36 1 3.7527 -3.2577 0.5263 37 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032107634.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -49.337681 kcal Electronic energy + Delta-G solvation = -20846.805473 eV Core-core repulsion = 17716.199936 eV Total energy + Delta-G solvation = -3130.605538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.42553 -36.77987 -35.59734 -35.17480 -33.62229 -32.44618 -31.95794 -28.01313 -27.41265 -26.77757 -25.01461 -22.50668 -22.07133 -21.09653 -18.41156 -17.36307 -16.72273 -16.34554 -15.92152 -15.06616 -15.02141 -14.37049 -14.32882 -14.18157 -13.69660 -13.39330 -13.16637 -12.87948 -12.68370 -12.34790 -12.25297 -12.16669 -12.00213 -11.62018 -11.51388 -11.16354 -11.10559 -11.04532 -11.00655 -10.68882 -10.49266 -10.22258 -10.00576 -9.70593 -8.97138 -8.68380 -8.43907 -8.03568 -6.05278 -4.09006 0.86798 1.14190 1.40888 3.32393 3.40028 3.43649 3.46867 3.79052 4.34588 4.46784 4.61256 4.74712 4.86843 4.99339 5.22421 5.27437 5.30788 5.40182 5.46841 5.56417 5.63008 5.64767 5.72445 5.86765 5.97837 6.07501 6.18748 6.26027 6.34085 6.42594 6.48422 6.55583 6.98115 7.21574 7.38022 7.58355 7.92413 8.20572 8.93892 9.56140 11.03434 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.005627 C = 0.005171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.268760 B = 4974.746791 C = 5413.037861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.038 4.038 3 C -0.152 4.152 4 C -0.011 4.011 5 C -0.680 4.680 6 S 2.689 3.311 7 O -0.944 6.944 8 O -0.977 6.977 9 N -0.985 5.985 10 C 0.087 3.913 11 C 0.256 3.744 12 C -0.525 4.525 13 H 0.063 0.937 14 C 0.061 3.939 15 N -0.897 5.897 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.282 1.282 20 C 0.024 3.976 21 C -0.178 4.178 22 C -0.150 4.150 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.128 0.872 27 H 0.144 0.856 28 H 0.045 0.955 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.020 -6.982 7.923 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C -0.171 4.171 4 C -0.030 4.030 5 C -0.764 4.764 6 S 2.778 3.222 7 O -0.934 6.934 8 O -0.967 6.967 9 N -0.825 5.825 10 C -0.059 4.059 11 C 0.134 3.866 12 C -0.565 4.565 13 H 0.081 0.919 14 C -0.141 4.141 15 N -0.536 5.536 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.208 1.208 20 C 0.023 3.977 21 C -0.234 4.234 22 C -0.169 4.169 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.146 0.854 27 H 0.161 0.839 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.535 -6.583 8.400 15.714 hybrid contribution 0.039 0.376 -0.641 0.744 sum -11.496 -6.207 7.759 15.195 Atomic orbital electron populations 1.20889 0.90960 1.02975 1.02748 1.20152 0.96087 0.93365 0.94211 1.21109 0.94209 0.97728 1.04026 1.21009 0.94536 0.97048 0.90455 1.31195 1.28629 0.98658 1.17955 1.02074 0.73511 0.73600 0.73031 1.93581 1.80050 1.33737 1.86039 1.93433 1.81408 1.65490 1.56402 1.57255 1.79701 1.18284 1.27293 1.21640 1.00611 0.80776 1.02886 1.19094 0.97727 0.89033 0.80701 1.21527 0.95577 1.30131 1.09236 0.91927 1.24930 0.97627 0.95880 0.95620 1.69935 1.32939 1.37200 1.13570 0.86451 0.84332 0.78860 0.77876 1.19575 1.21012 1.20815 1.19506 0.93971 0.93605 0.90610 1.21892 1.03139 0.94083 1.04253 1.20970 0.93534 0.97688 1.04709 0.90583 0.91302 0.91196 0.85387 0.83862 0.93655 0.90345 0.91017 0.94473 0.94587 0.92757 0.89100 0.87530 0.90335 0.85593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.01 36.01 0.36 -0.68 16 2 C -0.04 -0.48 5.88 -104.62 -0.62 -1.09 16 3 C -0.15 -2.10 9.70 -39.58 -0.38 -2.49 16 4 C -0.01 -0.19 9.55 -39.58 -0.38 -0.57 16 5 C -0.68 -12.04 5.91 -39.58 -0.23 -12.28 16 6 S 2.69 54.91 5.02 -107.50 -0.54 54.37 16 7 O -0.94 -22.63 16.21 -57.17 -0.93 -23.56 16 8 O -0.98 -19.86 13.96 -57.17 -0.80 -20.65 16 9 N -0.98 -20.44 3.13 -123.05 -0.38 -20.82 16 10 C 0.09 1.45 9.02 59.84 0.54 1.99 16 11 C 0.26 6.41 5.09 -5.19 -0.03 6.39 16 12 C -0.53 -14.68 9.39 -34.44 -0.32 -15.00 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 16 Si 0.90 21.81 29.54 -169.99 -5.02 16.78 16 17 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 C 0.02 0.37 5.87 -104.62 -0.61 -0.24 16 21 C -0.18 -2.36 8.32 36.01 0.30 -2.06 16 22 C -0.15 -1.98 9.36 -39.58 -0.37 -2.36 16 23 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 25 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 26 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.14 2.36 7.33 -52.49 -0.38 1.98 16 28 H 0.05 0.62 5.81 -51.93 -0.30 0.32 16 29 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.07 1.10 6.45 -51.93 -0.33 0.76 16 31 H 0.04 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.04 0.96 7.82 -51.93 -0.41 0.55 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 34 H 0.09 1.09 5.95 -51.93 -0.31 0.78 16 35 H 0.11 1.58 3.82 -51.93 -0.20 1.39 16 36 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 314.04 15.07 4.73 4.73 Total: -1.00 -33.20 314.04 -8.89 -42.09 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: -4.85 Total: -0.80 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: -1.84 Total: -26.74 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.35 Total: -46.23 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.72 Total: -44.21 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 54.91 SS G_CDS: -0.54 Total: 54.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.20 -8.89 -42.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032107634.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.243 kcal (2) G-P(sol) polarization free energy of solvation -33.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds