Wall clock time and date at job start Tue Mar 31 2020 06:03:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86796 * 119.99960 * 2 1 4 4 H 1.48502 * 109.47242 * 270.00085 * 3 2 1 5 5 H 1.48506 * 109.47309 * 30.00323 * 3 2 1 6 6 H 1.48497 * 109.47095 * 150.00220 * 3 2 1 7 7 C 1.38649 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99483 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00427 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00324 * 174.96465 * 9 7 2 11 11 C 1.38953 * 120.02962 * 5.37509 * 10 9 7 12 12 C 1.38125 * 120.07750 * 179.97438 * 11 10 9 13 13 C 1.38198 * 120.13993 * 359.75588 * 12 11 10 14 14 C 1.38945 * 120.06195 * 0.51898 * 13 12 11 15 15 N 1.39845 * 120.04076 * 179.73700 * 14 13 12 16 16 C 1.34775 * 120.00173 * 214.86086 * 15 14 13 17 17 O 1.21560 * 119.99812 * 355.47922 * 16 15 14 18 18 C 1.47812 * 119.99658 * 175.48165 * 16 15 14 19 19 C 1.39598 * 120.14394 * 180.02562 * 18 16 15 20 20 C 1.37947 * 119.85259 * 179.72295 * 19 18 16 21 21 C 1.38368 * 120.14552 * 0.27691 * 20 19 18 22 22 C 1.38365 * 120.29537 * 359.97438 * 21 20 19 23 23 C 1.37951 * 120.14514 * 0.04752 * 22 21 20 24 24 C 1.38727 * 120.03488 * 185.34731 * 10 9 7 25 25 H 0.97000 * 119.99545 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.96320 * 359.96971 * 11 10 9 27 27 H 1.08004 * 119.93431 * 180.02562 * 12 11 10 28 28 H 1.07996 * 119.97255 * 180.27803 * 13 12 11 29 29 H 0.97000 * 119.99649 * 34.86044 * 15 14 13 30 30 H 1.08006 * 120.07220 * 359.97438 * 19 18 16 31 31 H 1.07998 * 119.92868 * 180.29716 * 20 19 18 32 32 H 1.08003 * 119.85126 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.92254 * 180.02562 * 22 21 20 34 34 H 1.07996 * 120.07388 * 180.02562 * 23 22 21 35 35 H 1.07997 * 120.06839 * 0.05033 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1072 11 6 3.4578 -3.4383 -0.0976 12 6 4.2068 -4.5938 -0.2056 13 6 3.5789 -5.8197 -0.3184 14 6 2.1915 -5.8923 -0.3344 15 7 1.5566 -7.1326 -0.4542 16 6 0.4018 -7.2350 -1.1414 17 8 -0.1307 -6.2372 -1.5871 18 6 -0.2171 -8.5605 -1.3532 19 6 -1.4129 -8.6702 -2.0650 20 6 -1.9823 -9.9108 -2.2640 21 6 -1.3737 -11.0444 -1.7549 22 6 -0.1911 -10.9422 -1.0439 23 6 0.3886 -9.7075 -0.8374 24 6 1.4363 -4.7331 -0.2254 25 1 -0.4849 0.8401 0.0004 26 1 3.9515 -2.4821 -0.0057 27 1 5.2854 -4.5396 -0.1974 28 1 4.1672 -6.7219 -0.3982 29 1 1.9475 -7.9192 -0.0426 30 1 -1.8891 -7.7860 -2.4626 31 1 -2.9049 -9.9976 -2.8187 32 1 -1.8234 -12.0134 -1.9138 33 1 0.2790 -11.8309 -0.6496 34 1 1.3119 -9.6291 -0.2827 35 1 0.3577 -4.7871 -0.2335 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037408477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:44 Heat of formation + Delta-G solvation = -1.433867 kcal Electronic energy + Delta-G solvation = -20437.849286 eV Core-core repulsion = 17173.877063 eV Total energy + Delta-G solvation = -3263.972224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.50070 -39.05990 -38.19255 -36.45646 -34.19555 -32.22961 -31.56052 -31.15243 -29.39956 -28.33060 -25.31801 -24.24072 -22.80999 -22.09266 -21.31679 -20.20620 -18.49127 -17.92490 -17.03010 -16.29527 -15.77930 -15.17534 -15.05263 -15.00475 -14.68676 -14.20130 -14.10126 -13.81496 -13.56745 -13.44645 -12.94201 -12.68378 -12.46747 -11.88210 -11.72142 -11.52216 -11.32926 -11.19735 -10.99723 -10.77165 -10.43837 -9.84668 -9.68910 -9.25737 -9.21081 -9.15788 -8.79170 -7.69104 -7.17054 -6.39534 -3.98788 0.64875 1.11906 2.08835 2.35950 2.92065 3.15162 3.16447 3.20555 3.22179 3.73853 4.00923 4.50585 4.55275 4.64286 4.67484 4.91049 5.11430 5.14657 5.23886 5.37113 5.54450 5.64212 5.72710 5.83797 6.06463 6.10554 6.14648 6.19185 6.23383 6.40618 6.62451 6.70404 6.89729 7.05192 7.09851 7.36327 7.49563 7.68763 7.80480 8.05155 8.32871 9.05217 9.76574 10.78380 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.029393 B = 0.003455 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.385540 B = 8103.020217 C = 8951.654079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.167 3.833 11 C -0.244 4.244 12 C -0.059 4.059 13 C -0.235 4.235 14 C 0.174 3.826 15 N -0.664 5.664 16 C 0.548 3.452 17 O -0.504 6.504 18 C -0.128 4.128 19 C -0.059 4.059 20 C -0.128 4.128 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.088 4.088 24 C -0.187 4.187 25 H 0.270 0.730 26 H 0.128 0.872 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.404 0.596 30 H 0.139 0.861 31 H 0.130 0.870 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 -20.437 -1.461 20.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.112 3.888 11 C -0.264 4.264 12 C -0.077 4.077 13 C -0.256 4.256 14 C 0.081 3.919 15 N -0.309 5.309 16 C 0.336 3.664 17 O -0.378 6.378 18 C -0.131 4.131 19 C -0.078 4.078 20 C -0.146 4.146 21 C -0.117 4.117 22 C -0.147 4.147 23 C -0.107 4.107 24 C -0.208 4.208 25 H 0.080 0.920 26 H 0.146 0.854 27 H 0.130 0.870 28 H 0.126 0.874 29 H 0.240 0.760 30 H 0.157 0.843 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.943 -19.512 -1.777 19.615 hybrid contribution 0.780 0.337 0.195 0.872 sum 1.722 -19.174 -1.581 19.316 Atomic orbital electron populations 1.70061 1.05965 1.27623 1.45851 1.25308 0.95843 0.98837 0.96590 0.85704 0.78875 0.80075 0.78698 1.19882 1.20284 1.19195 1.21347 0.91817 0.80796 1.52857 0.88986 1.83992 1.34258 1.11337 1.78046 1.19131 0.90017 0.87845 0.91812 1.21190 0.93747 0.99095 1.12379 1.20498 0.98395 0.91662 0.97189 1.20268 0.91780 0.97774 1.15800 1.17171 0.90911 0.83814 1.00036 1.43252 1.24210 1.10029 1.53430 1.18385 0.80767 0.88881 0.78382 1.90870 1.61073 1.37430 1.48467 1.19991 0.97567 0.92774 1.02734 1.21378 0.93242 0.98521 0.94666 1.21186 1.00551 0.92173 1.00663 1.21379 0.95201 0.98766 0.96327 1.21095 0.96366 0.97357 0.99860 1.21335 0.99264 0.92117 0.97979 1.20180 1.00645 0.89221 1.10741 0.92030 0.85416 0.86997 0.87374 0.75955 0.84344 0.85250 0.85637 0.85411 0.85584 0.84803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.03 13.67 55.48 0.76 -25.27 16 2 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.39 -11.28 9.49 30.88 0.29 -10.99 16 8 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 9 O -0.17 -5.20 9.75 0.05 0.00 -5.20 16 10 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 11 C -0.24 -5.45 9.17 -39.36 -0.36 -5.82 16 12 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 13 C -0.24 -4.09 9.96 -39.33 -0.39 -4.49 16 14 C 0.17 3.34 6.29 -83.74 -0.53 2.81 16 15 N -0.66 -10.14 5.28 -10.74 -0.06 -10.20 16 16 C 0.55 9.12 7.61 -12.34 -0.09 9.02 16 17 O -0.50 -10.74 13.78 5.31 0.07 -10.66 16 18 C -0.13 -1.63 5.87 -104.97 -0.62 -2.24 16 19 C -0.06 -0.71 9.60 -39.18 -0.38 -1.09 16 20 C -0.13 -1.16 10.03 -39.64 -0.40 -1.56 16 21 C -0.10 -0.77 10.04 -39.49 -0.40 -1.16 16 22 C -0.13 -1.01 10.03 -39.64 -0.40 -1.41 16 23 C -0.09 -0.84 9.54 -39.18 -0.37 -1.21 16 24 C -0.19 -4.41 8.64 -39.20 -0.34 -4.75 16 25 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 27 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 28 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.40 4.41 6.87 -40.82 -0.28 4.13 16 30 H 0.14 1.76 7.65 -52.48 -0.40 1.36 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 33 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.13 0.89 6.41 -52.49 -0.34 0.55 16 35 H 0.13 3.39 6.22 -52.49 -0.33 3.07 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -34.88 308.39 -7.49 -42.37 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -3.16 Total: 7.72 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -4.73 Total: -19.34 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: 0.70 Total: -35.47 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.07 Total: -15.86 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.88 -7.49 -42.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037408477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.936 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds