Wall clock time and date at job start Tue Mar 31 2020 06:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86798 * 120.00039 * 2 1 4 4 H 1.48508 * 109.46963 * 272.54971 * 3 2 1 5 5 H 1.48497 * 109.47277 * 32.54802 * 3 2 1 6 6 H 1.48501 * 109.47130 * 152.55309 * 3 2 1 7 7 C 1.39942 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00026 * 347.61665 * 7 2 1 9 9 C 1.41437 * 119.99737 * 167.61777 * 7 2 1 10 10 C 1.40787 * 120.17930 * 328.69767 * 9 7 2 11 11 C 1.37714 * 120.04533 * 180.02562 * 10 9 7 12 12 C 1.38376 * 120.40878 * 359.69549 * 11 10 9 13 13 C 1.39888 * 120.35742 * 0.56117 * 12 11 10 14 14 C 1.47853 * 120.02671 * 179.73975 * 13 12 11 15 15 O 1.21571 * 120.00272 * 179.72191 * 14 13 12 16 16 N 1.34785 * 119.99953 * 359.72352 * 14 13 12 17 17 C 1.40044 * 120.00017 * 184.78687 * 16 14 13 18 18 C 1.38740 * 120.09158 * 325.97435 * 17 16 14 19 19 C 1.38194 * 119.98191 * 180.02562 * 18 17 16 20 20 C 1.38284 * 120.16757 * 0.02562 * 19 18 17 21 21 C 1.38253 * 120.17999 * 359.97438 * 20 19 18 22 22 C 1.38548 * 120.01886 * 0.02562 * 21 20 19 23 23 O 1.35969 * 120.08325 * 180.02562 * 22 21 20 24 24 C 1.39043 * 119.94586 * 359.46382 * 13 12 11 25 25 H 0.97002 * 120.00322 * 0.02562 * 1 2 3 26 26 H 1.07997 * 119.97567 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.79409 * 180.02562 * 11 10 9 28 28 H 1.07996 * 119.81438 * 180.29908 * 12 11 10 29 29 H 0.96995 * 119.99502 * 4.78891 * 16 14 13 30 30 H 1.08000 * 120.00896 * 0.03789 * 18 17 16 31 31 H 1.08004 * 119.91915 * 180.02562 * 19 18 17 32 32 H 1.07996 * 119.90909 * 180.27689 * 20 19 18 33 33 H 1.08007 * 119.99067 * 180.02562 * 21 20 19 34 34 H 0.96701 * 114.00516 * 90.00189 * 23 22 21 35 35 H 1.08004 * 120.20084 * 180.22862 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4358 2.0775 -1.3988 5 1 1.4677 2.6365 0.7532 6 1 3.5657 1.4251 0.6453 7 6 2.0079 -1.2120 0.0005 8 1 1.4867 -2.1362 0.2015 9 6 3.3976 -1.2263 -0.2621 10 6 3.9651 -0.2678 -1.1231 11 6 5.3184 -0.2846 -1.3773 12 6 6.1304 -1.2364 -0.7860 13 6 5.5837 -2.2001 0.0680 14 6 6.4571 -3.2172 0.6913 15 8 5.9823 -4.0514 1.4374 16 7 7.7799 -3.2196 0.4324 17 6 8.5912 -4.2412 0.9415 18 6 8.3088 -4.8027 2.1784 19 6 9.1112 -5.8104 2.6789 20 6 10.1965 -6.2611 1.9500 21 6 10.4842 -5.7064 0.7168 22 6 9.6848 -4.6958 0.2078 23 8 9.9663 -4.1497 -1.0052 24 6 4.2191 -2.1971 0.3347 25 1 -0.4851 0.8400 -0.0004 26 1 3.3386 0.4813 -1.5844 27 1 5.7495 0.4529 -2.0380 28 1 7.1912 -1.2378 -0.9883 29 1 8.1698 -2.5136 -0.1065 30 1 7.4619 -4.4525 2.7499 31 1 8.8902 -6.2470 3.6417 32 1 10.8182 -7.0519 2.3431 33 1 11.3324 -6.0611 0.1499 34 1 9.5339 -4.5949 -1.7469 35 1 3.7932 -2.9369 0.9963 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045012401.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:33 Heat of formation + Delta-G solvation = -30.628029 kcal Electronic energy + Delta-G solvation = -20738.407325 eV Core-core repulsion = 17473.169147 eV Total energy + Delta-G solvation = -3265.238178 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61614 -38.97401 -37.45703 -36.61549 -34.58785 -33.72529 -31.10009 -30.29727 -29.99566 -28.86899 -25.34035 -23.93862 -22.79551 -21.95756 -20.79525 -20.03941 -18.72745 -17.98958 -17.22151 -16.45053 -15.89542 -15.83831 -15.24701 -14.76990 -14.66523 -14.51907 -13.91758 -13.77177 -13.61550 -12.87912 -12.82370 -12.47387 -12.32719 -12.12287 -11.78988 -11.68052 -11.15897 -10.96645 -10.84740 -10.61208 -10.28598 -10.01620 -9.80462 -9.51225 -9.23820 -8.80149 -8.14977 -7.92689 -7.82855 -7.03470 -4.63412 1.09510 1.26745 1.81518 2.42843 3.00377 3.13186 3.19797 3.23198 3.37017 3.65224 3.87553 4.13251 4.41248 4.82937 4.94313 5.14797 5.22653 5.28471 5.46105 5.55156 5.76206 5.86826 5.92175 6.17498 6.21925 6.28831 6.42199 6.50711 6.55523 6.59539 6.85869 6.90012 7.10883 7.27867 7.38054 7.52085 7.58273 7.66235 7.86184 8.21212 8.41778 8.44715 8.64211 9.98721 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.034641 B = 0.003780 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.088854 B = 7406.169935 C = 7921.519571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.081 3.919 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.440 4.440 8 H 0.094 0.906 9 C 0.081 3.919 10 C -0.218 4.218 11 C -0.082 4.082 12 C -0.214 4.214 13 C -0.111 4.111 14 C 0.564 3.436 15 O -0.528 6.528 16 N -0.671 5.671 17 C 0.135 3.865 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.128 4.128 22 C 0.070 3.930 23 O -0.496 6.496 24 C -0.131 4.131 25 H 0.287 0.713 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.415 0.585 30 H 0.147 0.853 31 H 0.127 0.873 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.388 0.612 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.436 -5.743 -0.006 17.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.138 4.138 3 Si 0.741 3.259 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.166 1.166 7 C -0.468 4.468 8 H 0.112 0.888 9 C 0.078 3.922 10 C -0.238 4.238 11 C -0.100 4.100 12 C -0.234 4.234 13 C -0.114 4.114 14 C 0.356 3.644 15 O -0.405 6.405 16 N -0.317 5.317 17 C 0.039 3.961 18 C -0.133 4.133 19 C -0.128 4.128 20 C -0.148 4.148 21 C -0.147 4.147 22 C 0.023 3.977 23 O -0.305 6.305 24 C -0.151 4.151 25 H 0.098 0.902 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.253 0.747 30 H 0.165 0.835 31 H 0.145 0.855 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.244 0.756 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 16.071 -5.807 0.834 17.108 hybrid contribution 0.132 0.828 -0.734 1.114 sum 16.203 -4.980 0.100 16.952 Atomic orbital electron populations 1.69641 1.07996 1.30425 1.35013 1.26171 0.94883 1.01699 0.91063 0.86291 0.81043 0.79594 0.79017 1.19553 1.21763 1.16611 1.19543 0.91029 0.95868 1.40403 0.88754 1.17712 0.93539 0.91029 0.89901 1.21229 0.94990 1.03871 1.03701 1.20515 0.93729 0.97318 0.98474 1.20415 0.97635 0.99996 1.05344 1.19303 0.94006 0.96698 1.01416 1.18990 0.80838 0.84449 0.80095 1.90693 1.74622 1.39213 1.35930 1.43530 1.07675 1.26612 1.53852 1.18234 0.91474 0.92706 0.93643 1.21401 1.00659 0.97552 0.93680 1.21112 0.94720 0.96861 1.00078 1.20985 0.98171 1.00784 0.94844 1.21180 1.00250 0.95885 0.97365 1.18210 0.96123 0.95939 0.87474 1.84812 1.73143 1.58295 1.14292 1.21290 0.90796 1.01770 1.01265 0.90226 0.87723 0.88042 0.88431 0.74651 0.83538 0.85540 0.85753 0.85328 0.75634 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.03 13.93 55.55 0.77 -20.26 16 2 C 0.08 2.06 5.47 -17.34 -0.09 1.97 16 3 Si 0.91 20.05 24.40 -169.99 -4.15 15.90 16 4 H -0.27 -5.66 6.67 56.52 0.38 -5.28 16 5 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.24 -5.43 6.68 56.52 0.38 -5.06 16 7 C -0.44 -11.61 9.60 -37.73 -0.36 -11.97 16 8 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 9 C 0.08 1.99 5.13 -106.87 -0.55 1.44 16 10 C -0.22 -4.95 7.00 -38.81 -0.27 -5.22 16 11 C -0.08 -1.62 10.01 -39.72 -0.40 -2.02 16 12 C -0.21 -4.02 9.55 -38.91 -0.37 -4.39 16 13 C -0.11 -2.30 5.87 -105.05 -0.62 -2.91 16 14 C 0.56 10.78 7.62 -12.32 -0.09 10.69 16 15 O -0.53 -11.24 13.70 5.30 0.07 -11.16 16 16 N -0.67 -10.44 5.14 -10.60 -0.05 -10.49 16 17 C 0.14 2.00 6.33 -83.52 -0.53 1.47 16 18 C -0.11 -1.66 8.71 -39.41 -0.34 -2.00 16 19 C -0.11 -1.28 10.04 -39.58 -0.40 -1.67 16 20 C -0.13 -1.32 10.04 -39.56 -0.40 -1.72 16 21 C -0.13 -1.38 9.98 -39.46 -0.39 -1.77 16 22 C 0.07 0.87 6.72 -39.07 -0.26 0.61 16 23 O -0.50 -5.47 13.05 -19.64 -0.26 -5.73 16 24 C -0.13 -3.05 9.34 -38.44 -0.36 -3.41 16 25 H 0.29 6.76 8.30 -40.82 -0.34 6.42 16 26 H 0.11 2.35 4.42 -52.49 -0.23 2.12 16 27 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.10 1.49 6.39 -52.49 -0.34 1.16 16 29 H 0.42 5.71 6.58 -40.82 -0.27 5.44 16 30 H 0.15 2.41 6.13 -52.49 -0.32 2.09 16 31 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 32 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.39 2.83 9.06 45.56 0.41 3.24 16 35 H 0.12 2.77 7.64 -52.48 -0.40 2.37 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -29.02 300.88 -6.96 -35.98 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -2.44 Total: 12.14 kcal Atomic # 6 Polarization: -15.48 SS G_CDS: -5.44 Total: -20.91 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.72 Total: -30.75 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.18 Total: -16.89 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.15 Total: 15.90 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.02 -6.96 -35.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045012401.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.353 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds