Wall clock time and date at job start Tue Mar 31 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38257 * 120.00120 * 2 1 4 4 C 1.38212 * 119.99904 * 179.97438 * 3 2 1 5 5 C 1.38268 * 120.00214 * 359.97438 * 4 3 2 6 6 S 1.76192 * 120.00039 * 180.02562 * 5 4 3 7 7 O 1.42106 * 106.40095 * 203.53989 * 6 5 4 8 8 O 1.42095 * 106.40344 * 336.46304 * 6 5 4 9 9 N 1.65609 * 107.21809 * 90.00242 * 6 5 4 10 10 C 1.46502 * 119.99846 * 64.99859 * 9 6 5 11 11 H 1.09002 * 109.47314 * 25.00063 * 10 9 6 12 12 C 1.53004 * 109.46915 * 265.00276 * 10 9 6 13 13 C 1.50698 * 109.47130 * 145.00249 * 10 9 6 14 14 H 1.08002 * 119.99840 * 34.99429 * 13 10 9 15 15 C 1.37880 * 119.99828 * 215.00325 * 13 10 9 16 16 N 1.31516 * 119.99780 * 184.91639 * 15 13 10 17 17 Si 1.86803 * 120.00205 * 4.90978 * 15 13 10 18 18 H 1.48500 * 109.46690 * 84.83590 * 17 15 13 19 19 H 1.48493 * 109.47139 * 204.83921 * 17 15 13 20 20 H 1.48504 * 109.46929 * 324.84073 * 17 15 13 21 21 C 1.38211 * 119.99676 * 0.02562 * 5 4 3 22 22 C 1.38220 * 119.99918 * 179.72833 * 2 1 3 23 23 C 1.50701 * 119.99779 * 0.02562 * 22 2 1 24 24 H 1.09008 * 109.47172 * 89.99426 * 1 2 3 25 25 H 1.09001 * 109.47014 * 330.00094 * 1 2 3 26 26 H 1.08998 * 109.47392 * 209.99860 * 1 2 3 27 27 H 1.07996 * 120.00419 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.00110 * 180.02562 * 4 3 2 29 29 H 0.96994 * 119.99929 * 245.00235 * 9 6 5 30 30 H 1.08996 * 109.46590 * 295.01864 * 12 10 9 31 31 H 1.08993 * 109.47109 * 55.01925 * 12 10 9 32 32 H 1.08997 * 109.46882 * 175.02456 * 12 10 9 33 33 H 0.96993 * 119.99895 * 179.97438 * 16 15 13 34 34 H 1.07996 * 120.00215 * 179.97438 * 21 5 4 35 35 H 1.08991 * 109.47437 * 89.99982 * 23 22 2 36 36 H 1.08997 * 109.46856 * 210.00497 * 23 22 2 37 37 H 1.09000 * 109.46919 * 329.99560 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 -0.0002 0.0016 6 16 6.0336 -0.0002 0.0030 7 8 6.4353 -1.2502 -0.5406 8 8 6.4354 1.2493 -0.5416 9 7 6.5226 0.0005 1.5852 10 6 6.2266 -1.1491 2.4438 11 1 6.1030 -2.0401 1.8283 12 6 4.9367 -0.8847 3.2231 13 6 7.3633 -1.3600 3.4105 14 1 7.8994 -0.5105 3.8072 15 6 7.7188 -2.6374 3.7884 16 7 8.6451 -2.8184 4.7043 17 14 6.8848 -4.1111 2.9996 18 1 7.5718 -4.4458 1.7263 19 1 6.9571 -5.2729 3.9215 20 1 5.4623 -3.7858 2.7238 21 6 3.5806 -1.1971 0.0016 22 6 2.1980 -1.1970 0.0057 23 6 1.4445 -2.5021 0.0113 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3634 -0.8900 0.5138 27 1 1.6584 2.1326 0.0004 28 1 4.1204 2.1325 0.0010 29 1 7.0050 0.7619 1.9434 30 1 5.0889 -0.0473 3.9041 31 1 4.1338 -0.6450 2.5261 32 1 4.6688 -1.7735 3.7944 33 1 8.8950 -3.7170 4.9703 34 1 4.1205 -2.1324 0.0020 35 1 1.2632 -2.8214 -1.0149 36 1 2.0333 -3.2594 0.5288 37 1 0.4919 -2.3694 0.5242 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:37 Heat of formation + Delta-G solvation = -62.959799 kcal Electronic energy + Delta-G solvation = -20809.298460 eV Core-core repulsion = 17678.102223 eV Total energy + Delta-G solvation = -3131.196237 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.60779 -36.76478 -35.60404 -35.33700 -33.59066 -32.29102 -32.21855 -29.06499 -27.85638 -26.67679 -25.31789 -22.34628 -21.43923 -20.79368 -18.92722 -17.77260 -17.20255 -16.15595 -16.09945 -15.48203 -15.21401 -14.53590 -14.40786 -14.16050 -13.58963 -13.23356 -12.98576 -12.86158 -12.78297 -12.56346 -12.30252 -12.21794 -11.89025 -11.77793 -11.71869 -11.59147 -11.54017 -11.10425 -11.06211 -10.76975 -10.55283 -10.43559 -9.86069 -9.34926 -9.05473 -8.77070 -8.70381 -8.51197 -6.23664 -4.24564 0.76684 1.04284 1.31295 3.23109 3.29801 3.35619 3.37143 3.74528 4.25152 4.30608 4.55987 4.63545 4.82802 4.83726 5.09371 5.15450 5.24035 5.29753 5.31822 5.50392 5.60154 5.64748 5.70587 5.94929 5.99743 6.04801 6.17223 6.21126 6.26043 6.43331 6.46019 6.55159 6.88215 7.07472 7.12845 7.44600 7.90421 8.35673 8.79991 9.36585 10.88245 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.018455 B = 0.006737 C = 0.005727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.829134 B = 4155.248923 C = 4888.118160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.041 4.041 3 C -0.142 4.142 4 C -0.022 4.022 5 C -0.667 4.667 6 S 2.677 3.323 7 O -0.963 6.963 8 O -0.979 6.979 9 N -1.091 6.091 10 C 0.236 3.764 11 H 0.048 0.952 12 C -0.159 4.159 13 C -0.514 4.514 14 H 0.083 0.917 15 C 0.079 3.921 16 N -0.886 5.886 17 Si 0.866 3.134 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.262 1.262 21 C -0.013 4.013 22 C -0.110 4.110 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.413 0.587 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.055 0.945 33 H 0.268 0.732 34 H 0.138 0.862 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 4.421 -8.102 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.041 4.041 3 C -0.160 4.160 4 C -0.041 4.041 5 C -0.753 4.753 6 S 2.766 3.234 7 O -0.953 6.953 8 O -0.969 6.969 9 N -0.853 5.853 10 C 0.132 3.868 11 H 0.066 0.934 12 C -0.219 4.219 13 C -0.554 4.554 14 H 0.101 0.899 15 C -0.126 4.126 16 N -0.523 5.523 17 Si 0.692 3.308 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.187 1.187 21 C -0.033 4.033 22 C -0.111 4.111 23 C -0.175 4.175 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.248 0.752 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.156 0.844 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.837 4.119 -8.827 18.593 hybrid contribution -0.816 -0.476 0.192 0.964 sum -16.653 3.644 -8.635 19.109 Atomic orbital electron populations 1.20961 0.91022 1.03290 1.02645 1.20009 0.96069 0.92817 0.95183 1.21081 0.94184 0.97592 1.03183 1.20848 0.94498 0.96579 0.92152 1.31196 1.28189 0.99123 1.16745 1.02370 0.73652 0.73465 0.73870 1.93565 1.80179 1.44166 1.77393 1.93517 1.81466 1.44054 1.77899 1.55765 1.70477 1.29523 1.29508 1.18994 0.94620 0.83464 0.89767 0.93427 1.22443 0.97368 1.01797 1.00280 1.21001 1.15519 0.94453 1.24444 0.89939 1.24987 0.94409 0.98772 0.94420 1.69873 1.30213 1.22683 1.29482 0.87028 0.80976 0.82610 0.80213 1.19047 1.20994 1.18687 1.20839 0.93907 0.96945 0.91564 1.19845 0.93669 0.95237 1.02372 1.20877 1.00115 0.93976 1.02493 0.90685 0.91239 0.90714 0.85409 0.84443 0.75237 0.92638 0.95264 0.92629 0.92182 0.84435 0.91031 0.91076 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.61 36.00 0.35 -0.65 16 2 C -0.04 -0.48 5.88 -104.62 -0.62 -1.09 16 3 C -0.14 -1.71 9.70 -39.58 -0.38 -2.10 16 4 C -0.02 -0.31 9.52 -39.58 -0.38 -0.68 16 5 C -0.67 -10.94 4.95 -39.58 -0.20 -11.13 16 6 S 2.68 50.87 5.72 -107.50 -0.61 50.26 16 7 O -0.96 -21.20 16.62 -57.17 -0.95 -22.15 16 8 O -0.98 -19.38 17.28 -57.17 -0.99 -20.37 16 9 N -1.09 -21.61 5.46 -5.88 -0.03 -21.65 16 10 C 0.24 5.32 2.56 -69.08 -0.18 5.14 16 11 H 0.05 1.12 4.65 -51.93 -0.24 0.87 16 12 C -0.16 -3.15 9.50 37.16 0.35 -2.80 16 13 C -0.51 -13.66 9.11 -34.44 -0.31 -13.97 16 14 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 17 Si 0.87 20.84 26.99 -169.99 -4.59 16.25 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -5.84 6.82 56.52 0.39 -5.45 16 21 C -0.01 -0.21 8.36 -39.58 -0.33 -0.54 16 22 C -0.11 -1.46 5.88 -104.62 -0.62 -2.07 16 23 C -0.12 -1.21 9.60 36.01 0.35 -0.87 16 24 H 0.07 0.53 8.14 -51.92 -0.42 0.10 16 25 H 0.07 0.48 8.09 -51.93 -0.42 0.07 16 26 H 0.07 0.54 5.94 -51.93 -0.31 0.24 16 27 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 28 H 0.14 1.76 7.62 -52.49 -0.40 1.36 16 29 H 0.41 7.47 8.83 -34.47 -0.30 7.17 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.03 0.51 6.17 -51.93 -0.32 0.19 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 34 H 0.14 2.20 7.62 -52.49 -0.40 1.80 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.07 0.60 5.94 -51.93 -0.31 0.29 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -32.41 317.12 -8.49 -40.90 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.81 Total: 5.79 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.06 Total: -28.68 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.74 Total: -46.78 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -1.94 Total: -42.52 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.59 Total: 16.25 kcal Atomic # 16 Polarization: 50.87 SS G_CDS: -0.61 Total: 50.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.41 -8.49 -40.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.056 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds