Wall clock time and date at job start Tue Mar 31 2020 06:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38255 * 120.00136 * 2 1 4 4 C 1.38210 * 119.99850 * 179.69868 * 3 2 1 5 5 C 1.38258 * 120.00090 * 0.02562 * 4 3 2 6 6 S 1.76208 * 119.99851 * 180.02562 * 5 4 3 7 7 O 1.42098 * 106.40003 * 358.51770 * 6 5 4 8 8 O 1.42095 * 106.40452 * 131.44251 * 6 5 4 9 9 N 1.65602 * 107.21300 * 244.97997 * 6 5 4 10 10 C 1.46497 * 119.99976 * 64.55773 * 9 6 5 11 11 H 1.09002 * 109.47455 * 335.94241 * 10 9 6 12 12 C 1.52998 * 109.47398 * 95.94325 * 10 9 6 13 13 C 1.50703 * 109.47270 * 215.94402 * 10 9 6 14 14 H 1.08004 * 119.99510 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00516 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99647 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 120.00566 * 179.97438 * 15 13 10 18 18 H 1.48511 * 109.46948 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47221 * 119.99596 * 17 15 13 20 20 H 1.48501 * 109.47431 * 240.00169 * 17 15 13 21 21 C 1.38206 * 120.00305 * 359.97438 * 5 4 3 22 22 C 1.50703 * 120.00546 * 180.02562 * 21 5 4 23 23 C 1.38213 * 119.99559 * 179.72257 * 2 1 3 24 24 H 1.09000 * 109.46968 * 89.99701 * 1 2 3 25 25 H 1.08995 * 109.47276 * 210.00146 * 1 2 3 26 26 H 1.09005 * 109.46940 * 330.00539 * 1 2 3 27 27 H 1.07999 * 120.00000 * 359.71421 * 3 2 1 28 28 H 1.07999 * 119.99949 * 180.02562 * 4 3 2 29 29 H 0.97003 * 120.00116 * 244.55107 * 9 6 5 30 30 H 1.09004 * 109.47369 * 179.97438 * 12 10 9 31 31 H 1.08996 * 109.47201 * 300.00266 * 12 10 9 32 32 H 1.09006 * 109.47361 * 59.99613 * 12 10 9 33 33 H 0.97002 * 120.00376 * 180.02562 * 16 15 13 34 34 H 1.09003 * 109.47014 * 84.53176 * 22 21 5 35 35 H 1.08992 * 109.47179 * 204.53675 * 22 21 5 36 36 H 1.09006 * 109.46363 * 324.53824 * 22 21 5 37 37 H 1.08001 * 120.00640 * 0.27434 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0063 5 6 4.2716 -0.0001 0.0121 6 16 6.0337 -0.0001 0.0208 7 8 6.4351 1.3625 -0.0152 8 8 6.4299 -0.9003 1.0463 9 7 6.5308 -0.6719 -1.4089 10 6 6.2332 -0.0004 -2.6764 11 1 5.3628 0.6436 -2.5508 12 6 7.4360 0.8447 -3.1006 13 6 5.9457 -1.0324 -3.7363 14 1 5.9815 -2.0835 -3.4903 15 6 5.6379 -0.6350 -5.0201 16 7 5.5948 0.6449 -5.3197 17 14 5.2822 -1.9141 -6.3341 18 1 5.3942 -3.2729 -5.7452 19 1 3.9076 -1.7149 -6.8597 20 1 6.2612 -1.7718 -7.4415 21 6 3.5806 -1.1970 0.0121 22 6 4.3340 -2.5022 0.0189 23 6 2.1980 -1.1970 0.0058 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6584 2.1326 -0.0047 28 1 4.1204 2.1325 0.0067 29 1 7.0192 -1.5101 -1.4070 30 1 7.2147 1.3441 -4.0439 31 1 7.6440 1.5912 -2.3340 32 1 8.3065 0.2008 -3.2262 33 1 5.3779 0.9246 -6.2228 34 1 4.5958 -2.7652 1.0438 35 1 3.7080 -3.2853 -0.4086 36 1 5.2433 -2.3998 -0.5735 37 1 1.6580 -2.1323 0.0058 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:41 Heat of formation + Delta-G solvation = -63.422631 kcal Electronic energy + Delta-G solvation = -20952.778629 eV Core-core repulsion = 17821.562322 eV Total energy + Delta-G solvation = -3131.216307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.31120 -36.70822 -35.48792 -35.26203 -33.53610 -32.23439 -31.86935 -28.30116 -27.38384 -26.72897 -25.21526 -22.25495 -21.02272 -20.90248 -18.90966 -17.52727 -16.98923 -16.28538 -15.66977 -15.07784 -14.89943 -14.42365 -14.15438 -14.03827 -13.57377 -13.14328 -13.05010 -12.63272 -12.52114 -12.23887 -12.04584 -11.87134 -11.64177 -11.61820 -11.54565 -11.33533 -11.15357 -11.01702 -10.98343 -10.55014 -10.35565 -10.24359 -10.11153 -9.18679 -8.87268 -8.61548 -8.56017 -8.28897 -6.14062 -4.22114 0.95354 1.20191 1.53197 3.21690 3.30125 3.32700 3.55027 3.82797 4.33492 4.33946 4.73045 4.84088 4.98005 5.06060 5.17867 5.33344 5.35792 5.51263 5.55751 5.72388 5.80490 5.84588 5.95347 6.08878 6.30540 6.34459 6.37192 6.50711 6.59412 6.83988 7.06872 7.08691 7.10434 7.58345 7.69947 7.82360 8.03757 8.27057 8.81080 9.44152 10.91662 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.007472 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.268589 B = 3746.578911 C = 4643.635833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.152 4.152 4 C -0.012 4.012 5 C -0.673 4.673 6 S 2.691 3.309 7 O -0.967 6.967 8 O -0.981 6.981 9 N -1.101 6.101 10 C 0.276 3.724 11 H 0.041 0.959 12 C -0.158 4.158 13 C -0.523 4.523 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.898 3.102 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.032 3.968 22 C -0.145 4.145 23 C -0.148 4.148 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.127 0.873 28 H 0.141 0.859 29 H 0.408 0.592 30 H 0.091 0.909 31 H 0.025 0.975 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 -2.334 9.031 11.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.171 4.171 4 C -0.031 4.031 5 C -0.759 4.759 6 S 2.780 3.220 7 O -0.957 6.957 8 O -0.972 6.972 9 N -0.862 5.862 10 C 0.172 3.828 11 H 0.059 0.941 12 C -0.217 4.217 13 C -0.563 4.563 14 H 0.083 0.917 15 C -0.139 4.139 16 N -0.524 5.524 17 Si 0.726 3.274 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.030 3.970 22 C -0.201 4.201 23 C -0.167 4.167 24 H 0.095 0.905 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.145 0.855 28 H 0.159 0.841 29 H 0.242 0.758 30 H 0.110 0.890 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.021 -1.712 9.539 11.967 hybrid contribution -0.821 -1.051 -1.259 1.834 sum -7.841 -2.762 8.279 11.733 Atomic orbital electron populations 1.20888 0.91023 1.02852 1.02807 1.20133 0.96054 0.93376 0.94022 1.21057 0.94182 0.97663 1.04186 1.20936 0.94592 0.96803 0.90764 1.30870 1.27739 0.98764 1.18516 1.01820 0.73666 0.73661 0.72849 1.93537 1.80406 1.35105 1.86701 1.93529 1.81885 1.65445 1.56296 1.55601 1.70413 1.37496 1.22686 1.18516 0.93884 0.91605 0.78832 0.94097 1.22230 0.98171 0.98843 1.02483 1.21317 1.48049 0.93000 0.93926 0.91737 1.24912 0.95070 0.95453 0.98420 1.69891 1.48100 1.14071 1.20322 0.86449 0.77900 0.81557 0.81534 1.19704 1.21016 1.20880 1.19473 0.94014 0.93551 0.89930 1.21261 1.00930 0.94007 1.03926 1.20958 0.93488 0.97713 1.04503 0.90531 0.91327 0.91272 0.85502 0.84113 0.75757 0.89017 0.95622 0.94894 0.92657 0.89075 0.90356 0.90270 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.01 36.01 0.36 -0.82 16 2 C -0.04 -0.49 5.88 -104.62 -0.62 -1.11 16 3 C -0.15 -2.24 9.70 -39.59 -0.38 -2.63 16 4 C -0.01 -0.20 9.55 -39.58 -0.38 -0.58 16 5 C -0.67 -12.33 5.72 -39.59 -0.23 -12.56 16 6 S 2.69 52.54 4.85 -107.50 -0.52 52.02 16 7 O -0.97 -21.11 16.34 -57.17 -0.93 -22.04 16 8 O -0.98 -19.50 16.47 -57.17 -0.94 -20.44 16 9 N -1.10 -22.24 4.28 -5.88 -0.03 -22.27 16 10 C 0.28 6.62 2.77 -69.08 -0.19 6.43 16 11 H 0.04 1.06 7.83 -51.93 -0.41 0.65 16 12 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 13 C -0.52 -13.37 8.76 -34.44 -0.30 -13.67 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -24.14 11.32 55.43 0.63 -23.51 16 17 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 C 0.03 0.53 5.87 -104.62 -0.61 -0.08 16 22 C -0.14 -2.17 8.61 36.01 0.31 -1.86 16 23 C -0.15 -2.17 9.33 -39.58 -0.37 -2.54 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 27 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.14 2.30 7.33 -52.49 -0.38 1.92 16 29 H 0.41 7.38 8.46 -34.47 -0.29 7.09 16 30 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 31 H 0.02 0.58 7.74 -51.93 -0.40 0.18 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.09 1.27 8.01 -51.93 -0.42 0.85 16 35 H 0.08 0.98 8.05 -51.93 -0.42 0.57 16 36 H 0.08 1.26 5.44 -51.93 -0.28 0.97 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 318.54 15.07 4.80 4.80 Total: -1.00 -30.89 318.54 -9.17 -40.05 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -4.99 Total: 7.39 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: -2.16 Total: -31.29 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.60 Total: -45.78 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -1.88 Total: -42.48 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.52 Total: 52.02 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.89 -9.17 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.370 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds