Wall clock time and date at job start Tue Mar 31 2020 06:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38253 * 119.99444 * 2 1 4 4 C 1.38213 * 119.99674 * 180.02562 * 3 2 1 5 5 C 1.38261 * 119.99882 * 359.97372 * 4 3 2 6 6 S 1.76199 * 119.99659 * 180.30211 * 5 4 3 7 7 O 1.42100 * 106.40561 * 359.29924 * 6 5 4 8 8 O 1.42102 * 106.40027 * 132.22012 * 6 5 4 9 9 N 1.65605 * 107.21810 * 245.75649 * 6 5 4 10 10 C 1.46498 * 119.99738 * 65.83358 * 9 6 5 11 11 H 1.09006 * 109.47282 * 23.93055 * 10 9 6 12 12 C 1.52998 * 109.47322 * 263.92577 * 10 9 6 13 13 C 1.50700 * 109.46961 * 143.92396 * 10 9 6 14 14 H 1.07998 * 120.00229 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00324 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99370 * 0.02562 * 15 13 10 17 17 Si 1.86791 * 120.00362 * 180.02562 * 15 13 10 18 18 H 1.48499 * 109.47481 * 89.99661 * 17 15 13 19 19 H 1.48502 * 109.47249 * 210.00148 * 17 15 13 20 20 H 1.48504 * 109.47068 * 329.99631 * 17 15 13 21 21 C 1.38210 * 120.00127 * 0.02562 * 5 4 3 22 22 C 1.50694 * 119.99751 * 180.02562 * 21 5 4 23 23 C 1.38211 * 119.99989 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47458 * 269.97602 * 1 2 3 25 25 H 1.08995 * 109.47631 * 29.98240 * 1 2 3 26 26 H 1.09000 * 109.46898 * 149.98140 * 1 2 3 27 27 H 1.07997 * 120.00545 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.00201 * 179.97438 * 4 3 2 29 29 H 0.96994 * 119.99944 * 245.83830 * 9 6 5 30 30 H 1.08995 * 109.47292 * 294.05675 * 12 10 9 31 31 H 1.09001 * 109.46951 * 54.05900 * 12 10 9 32 32 H 1.09007 * 109.46970 * 174.05545 * 12 10 9 33 33 H 0.97003 * 119.99793 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.47649 * 84.45462 * 22 21 5 35 35 H 1.09001 * 109.47043 * 204.44801 * 22 21 5 36 36 H 1.08995 * 109.47230 * 324.44963 * 22 21 5 37 37 H 1.07993 * 120.00207 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0005 5 6 4.2716 0.0001 -0.0005 6 16 6.0336 0.0002 0.0068 7 8 6.4349 1.3633 -0.0049 8 8 6.4307 -0.9182 1.0159 9 7 6.5299 -0.6458 -1.4350 10 6 6.2557 0.0622 -2.6878 11 1 6.1243 1.1249 -2.4835 12 6 4.9801 -0.4969 -3.3211 13 6 7.4120 -0.1277 -3.6355 14 1 8.2655 -0.7172 -3.3348 15 6 7.3803 0.4512 -4.8865 16 7 6.3413 1.1694 -5.2525 17 14 8.8132 0.2152 -6.0614 18 1 8.5808 -0.9959 -6.8887 19 1 8.9299 1.4032 -6.9448 20 1 10.0682 0.0507 -5.2848 21 6 3.5806 -1.1969 -0.0005 22 6 4.3342 -2.5019 0.0001 23 6 2.1981 -1.1969 -0.0005 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.6582 2.1326 -0.0004 28 1 4.1203 2.1327 -0.0010 29 1 7.0020 -1.4930 -1.4499 30 1 5.1470 -1.5311 -3.6220 31 1 4.1667 -0.4560 -2.5966 32 1 4.7178 0.0982 -4.1959 33 1 6.3188 1.5764 -6.1327 34 1 4.6015 -2.7667 1.0231 35 1 3.7059 -3.2845 -0.4253 36 1 5.2401 -2.3986 -0.5971 37 1 1.6581 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336909.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:44 Heat of formation + Delta-G solvation = -62.658877 kcal Electronic energy + Delta-G solvation = -20922.454237 eV Core-core repulsion = 17791.271049 eV Total energy + Delta-G solvation = -3131.183188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.103 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.40106 -36.70823 -35.50977 -35.26101 -33.59860 -32.21269 -31.92780 -28.33344 -27.47689 -26.78829 -25.21797 -22.32609 -21.05926 -20.90397 -18.91695 -17.53598 -17.13001 -16.16471 -15.71907 -15.06729 -14.95241 -14.41855 -14.23033 -14.08104 -13.58347 -13.27221 -13.11912 -12.67490 -12.57288 -12.24652 -12.07956 -11.88178 -11.78388 -11.64533 -11.49535 -11.35209 -11.16013 -11.04840 -10.97275 -10.63440 -10.34679 -10.29477 -10.07759 -9.19583 -8.93036 -8.63386 -8.62210 -8.26924 -6.11777 -4.18357 0.90721 1.15655 1.45625 3.26724 3.33724 3.37217 3.49850 3.82398 4.32488 4.38108 4.65747 4.78259 4.91026 5.02156 5.21318 5.26154 5.30225 5.42807 5.49111 5.66643 5.74277 5.76058 5.87798 6.01747 6.24513 6.28294 6.35346 6.44074 6.52735 6.80153 6.85391 7.01340 7.02575 7.58191 7.66246 7.87210 8.00908 8.26888 8.84107 9.47288 10.94879 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.005889 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.591874 B = 4753.530781 C = 5298.215188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.036 4.036 3 C -0.151 4.151 4 C -0.011 4.011 5 C -0.673 4.673 6 S 2.690 3.310 7 O -0.965 6.965 8 O -0.980 6.980 9 N -1.099 6.099 10 C 0.269 3.731 11 H 0.051 0.949 12 C -0.155 4.155 13 C -0.521 4.521 14 H 0.065 0.935 15 C 0.064 3.936 16 N -0.889 5.889 17 Si 0.901 3.099 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.028 3.972 22 C -0.144 4.144 23 C -0.148 4.148 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.127 0.873 28 H 0.142 0.858 29 H 0.408 0.592 30 H 0.035 0.965 31 H 0.014 0.986 32 H 0.089 0.911 33 H 0.264 0.736 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -4.155 8.793 14.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.170 4.170 4 C -0.030 4.030 5 C -0.758 4.758 6 S 2.778 3.222 7 O -0.955 6.955 8 O -0.971 6.971 9 N -0.861 5.861 10 C 0.165 3.835 11 H 0.069 0.931 12 C -0.214 4.214 13 C -0.561 4.561 14 H 0.083 0.917 15 C -0.139 4.139 16 N -0.527 5.527 17 Si 0.729 3.271 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.026 3.974 22 C -0.201 4.201 23 C -0.167 4.167 24 H 0.092 0.908 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.145 0.855 28 H 0.160 0.840 29 H 0.242 0.758 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.033 -3.550 9.307 14.138 hybrid contribution 0.086 -0.522 -1.138 1.255 sum -9.947 -4.072 8.169 13.500 Atomic orbital electron populations 1.20885 0.91007 1.03200 1.02486 1.20131 0.96054 0.93352 0.94108 1.21080 0.94183 0.97692 1.04014 1.20961 0.94557 0.96895 0.90576 1.30968 1.27960 0.98710 1.18181 1.01859 0.73627 0.73719 0.72960 1.93547 1.80294 1.35018 1.86613 1.93531 1.81791 1.64535 1.57199 1.55556 1.71310 1.36087 1.23104 1.18612 0.94235 0.91529 0.79112 0.93099 1.22256 0.96656 1.00916 1.01585 1.21221 1.03169 1.33016 0.98664 0.91719 1.24913 0.96270 0.94757 0.97950 1.69884 1.29051 1.33120 1.20610 0.86444 0.82458 0.77614 0.80575 1.20647 1.21120 1.19768 1.19463 0.93987 0.93514 0.90401 1.21256 1.00651 0.93981 1.04194 1.20948 0.93448 0.97704 1.04609 0.90798 0.91119 0.91223 0.85461 0.84030 0.75770 0.94624 0.96719 0.89288 0.92638 0.88887 0.90432 0.90528 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.04 -0.46 5.88 -104.63 -0.62 -1.08 16 3 C -0.15 -2.09 9.70 -39.58 -0.38 -2.47 16 4 C -0.01 -0.18 9.55 -39.58 -0.38 -0.55 16 5 C -0.67 -11.74 4.86 -39.58 -0.19 -11.94 16 6 S 2.69 52.51 4.93 -107.50 -0.53 51.98 16 7 O -0.96 -21.73 16.27 -57.17 -0.93 -22.66 16 8 O -0.98 -19.43 16.38 -57.17 -0.94 -20.36 16 9 N -1.10 -22.25 4.36 -5.88 -0.03 -22.27 16 10 C 0.27 6.48 2.91 -69.08 -0.20 6.28 16 11 H 0.05 1.36 7.47 -51.93 -0.39 0.97 16 12 C -0.15 -3.51 9.20 37.16 0.34 -3.17 16 13 C -0.52 -13.70 8.76 -34.44 -0.30 -14.01 16 14 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -24.43 11.39 55.43 0.63 -23.80 16 17 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 18 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 C 0.03 0.43 5.46 -104.63 -0.57 -0.14 16 22 C -0.14 -1.99 8.58 36.00 0.31 -1.68 16 23 C -0.15 -2.00 9.34 -39.58 -0.37 -2.37 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 26 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.14 2.27 7.33 -52.49 -0.38 1.88 16 29 H 0.41 7.38 8.44 -34.47 -0.29 7.09 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.01 0.29 6.62 -51.93 -0.34 -0.06 16 32 H 0.09 2.23 6.26 -51.93 -0.32 1.91 16 33 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.09 1.22 7.99 -51.93 -0.41 0.81 16 35 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 36 H 0.08 1.12 5.48 -51.93 -0.28 0.83 16 37 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -31.36 316.07 -9.07 -40.43 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.93 Total: 6.49 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: -2.10 Total: -30.24 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.61 Total: -46.08 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.87 Total: -43.03 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 52.51 SS G_CDS: -0.53 Total: 51.98 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.36 -9.07 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336909.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.228 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds