Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46502 * 109.47425 * 2 1 4 4 C 1.46498 * 120.00120 * 277.43587 * 3 2 1 5 5 C 1.50698 * 109.47325 * 269.99937 * 4 3 2 6 6 H 1.08002 * 119.99605 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00322 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99821 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99981 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46999 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46665 * 120.00123 * 9 7 5 12 12 H 1.48494 * 109.47112 * 239.99923 * 9 7 5 13 13 C 1.34779 * 120.00232 * 97.43123 * 3 2 1 14 14 O 1.21510 * 120.00210 * 185.64886 * 13 3 2 15 15 C 1.48166 * 119.99534 * 5.64118 * 13 3 2 16 16 C 1.39579 * 120.87295 * 135.61721 * 15 13 3 17 17 C 1.39038 * 118.96715 * 180.27643 * 16 15 13 18 18 N 1.39024 * 119.63553 * 179.74344 * 17 16 15 19 19 N 1.32366 * 120.73033 * 359.76783 * 17 16 15 20 20 C 1.31975 * 121.92712 * 359.97438 * 19 17 16 21 21 Cl 1.73604 * 119.51557 * 179.97438 * 20 19 17 22 22 C 1.38175 * 120.96707 * 0.02562 * 20 19 17 23 23 H 1.09001 * 109.47241 * 68.82596 * 1 2 3 24 24 H 1.09000 * 109.46939 * 188.82698 * 1 2 3 25 25 H 1.09000 * 109.47018 * 308.82606 * 1 2 3 26 26 H 1.09003 * 109.47276 * 240.00089 * 2 1 3 27 27 H 1.09003 * 109.47318 * 119.99921 * 2 1 3 28 28 H 1.09004 * 109.47047 * 29.99833 * 4 3 2 29 29 H 1.09003 * 109.47250 * 149.99255 * 4 3 2 30 30 H 0.97003 * 119.99882 * 179.97438 * 8 7 5 31 31 H 1.08006 * 120.51355 * 359.97438 * 16 15 13 32 32 H 0.97003 * 119.99692 * 180.02562 * 18 17 16 33 33 H 0.96999 * 120.00192 * 0.02562 * 18 17 16 34 34 H 1.08003 * 120.42069 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1078 2.1266 -1.2580 5 6 3.4667 1.9125 -1.8733 6 1 4.1914 1.2844 -1.3766 7 6 3.7848 2.5184 -3.0702 8 7 2.9021 3.2829 -3.6752 9 14 5.4696 2.2536 -3.8325 10 1 6.2718 1.3578 -2.9611 11 1 5.3145 1.6316 -5.1720 12 1 6.1613 3.5603 -3.9705 13 6 2.3854 1.9663 1.1574 14 8 2.6925 3.1418 1.1733 15 6 2.4142 1.1760 2.4103 16 6 3.4860 1.2800 3.2983 17 6 3.4750 0.5157 4.4597 18 7 4.5380 0.6045 5.3513 19 7 2.4637 -0.2959 4.7257 20 6 1.4320 -0.4155 3.9115 21 17 0.1397 -1.4996 4.3219 22 6 1.3657 0.3088 2.7367 23 1 -0.3634 0.3712 -0.9583 24 1 -0.3633 -1.0155 0.1577 25 1 -0.3633 0.6443 0.8006 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3383 1.7738 -1.9448 29 1 1.9607 3.1887 -1.0623 30 1 3.1260 3.7095 -4.5171 31 1 4.3135 1.9404 3.0842 32 1 4.5359 0.0734 6.1630 33 1 5.2818 1.1976 5.1617 34 1 0.5170 0.2045 2.0770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050708993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = 4.933588 kcal Electronic energy + Delta-G solvation = -19938.955068 eV Core-core repulsion = 16705.118860 eV Total energy + Delta-G solvation = -3233.836209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.65009 -38.78761 -36.81295 -35.58630 -34.67367 -33.04000 -32.25229 -30.37493 -29.13744 -27.46007 -24.63484 -23.26731 -23.10014 -22.28303 -19.27257 -17.78734 -17.35353 -16.50291 -16.39911 -16.10155 -15.31682 -15.14555 -14.86196 -14.61902 -14.16192 -13.98175 -13.57685 -12.98482 -12.43928 -12.27677 -12.10457 -11.90820 -11.66237 -11.38299 -11.26582 -10.94536 -10.91298 -10.68512 -10.40691 -10.19456 -9.97205 -9.73662 -9.64830 -9.11564 -8.48752 -8.00987 -7.78863 -6.09748 -4.14937 0.86914 1.10685 1.67399 3.14158 3.26602 3.34369 3.38029 3.39802 3.64823 3.85559 4.38951 4.58109 4.84299 5.00321 5.11146 5.25087 5.27745 5.33810 5.51188 5.58883 5.75504 5.99873 6.13515 6.19717 6.22053 6.49068 6.97803 6.98213 7.16259 7.36020 7.43177 7.86125 7.91922 8.16009 8.24556 8.75728 8.93292 9.50351 10.98415 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.021167 B = 0.004849 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.503537 B = 5773.510961 C = 6555.743897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.093 3.907 3 N -0.582 5.582 4 C 0.244 3.756 5 C -0.530 4.530 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.548 3.452 14 O -0.527 6.527 15 C -0.013 4.013 16 C -0.186 4.186 17 C 0.420 3.580 18 N -0.847 5.847 19 N -0.538 5.538 20 C 0.219 3.781 21 Cl -0.034 7.034 22 C -0.200 4.200 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.037 0.963 29 H 0.047 0.953 30 H 0.263 0.737 31 H 0.147 0.853 32 H 0.405 0.595 33 H 0.412 0.588 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -9.216 14.769 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.031 4.031 3 N -0.312 5.312 4 C 0.126 3.874 5 C -0.568 4.568 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.333 3.667 14 O -0.404 6.404 15 C -0.025 4.025 16 C -0.212 4.212 17 C 0.182 3.818 18 N -0.392 5.392 19 N -0.260 5.260 20 C 0.055 3.945 21 Cl -0.006 7.006 22 C -0.224 4.224 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.164 0.836 32 H 0.234 0.766 33 H 0.243 0.757 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -2.423 -9.044 15.318 17.952 hybrid contribution 1.095 0.175 -0.897 1.427 sum -1.327 -8.869 14.420 16.981 Atomic orbital electron populations 1.22332 0.96416 1.01725 1.02796 1.21740 0.93921 0.84056 1.03355 1.48209 1.61206 1.13549 1.08268 1.19381 0.97288 0.92873 0.77901 1.21452 0.99374 1.30134 1.05884 0.92332 1.24925 0.97379 0.94831 0.96840 1.69938 1.34477 1.31302 1.17419 0.86440 0.83960 0.78063 0.78947 1.19799 1.20900 1.20833 1.18001 0.79044 0.86833 0.82831 1.90777 1.48684 1.15379 1.85567 1.20363 0.93286 0.93631 0.95212 1.21483 1.01566 1.03722 0.94387 1.17824 0.86781 0.89167 0.88003 1.42159 1.21279 1.50992 1.24768 1.66092 1.02227 1.23265 1.34372 1.20972 0.89712 0.93110 0.90656 1.98397 1.45386 1.62661 1.94112 1.22253 1.02434 0.99528 0.98209 0.91461 0.91604 0.92372 0.89797 0.90700 0.94476 0.93478 0.92681 0.83573 0.76572 0.75704 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.13 37.16 0.34 -1.97 16 2 C 0.09 1.49 5.60 -4.04 -0.02 1.47 16 3 N -0.58 -12.09 2.46 -176.05 -0.43 -12.53 16 4 C 0.24 6.20 5.22 -5.20 -0.03 6.18 16 5 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.55 11.47 7.34 -12.18 -0.09 11.38 16 14 O -0.53 -13.11 16.55 5.36 0.09 -13.02 16 15 C -0.01 -0.22 5.12 -104.69 -0.54 -0.76 16 16 C -0.19 -2.76 9.63 -38.78 -0.37 -3.13 16 17 C 0.42 5.47 7.74 -155.06 -1.20 4.27 16 18 N -0.85 -7.55 9.07 31.11 0.28 -7.26 16 19 N -0.54 -7.51 10.34 -9.60 -0.10 -7.61 16 20 C 0.22 3.02 7.27 -17.51 -0.13 2.89 16 21 Cl -0.03 -0.40 29.10 -51.86 -1.51 -1.91 16 22 C -0.20 -2.88 7.27 -38.98 -0.28 -3.17 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.76 6.38 -51.93 -0.33 0.43 16 26 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 27 H 0.07 1.09 5.06 -51.93 -0.26 0.82 16 28 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 29 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.15 2.08 8.06 -52.48 -0.42 1.65 16 32 H 0.40 2.99 8.95 -40.82 -0.37 2.63 16 33 H 0.41 2.75 8.82 -40.82 -0.36 2.39 16 34 H 0.16 2.11 3.74 -52.48 -0.20 1.92 16 LS Contribution 307.81 15.07 4.64 4.64 Total: -1.00 -32.44 307.81 -7.61 -40.05 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.55 Total: 2.64 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -2.74 Total: 3.85 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: 0.49 Total: -52.63 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.51 Total: -1.91 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.44 -7.61 -40.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050708993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.982 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds