Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.39018 * 120.00271 * 2 1 4 4 C 1.39085 * 119.63617 * 359.97438 * 3 2 1 5 5 C 1.39531 * 118.96515 * 179.72604 * 4 3 2 6 6 C 1.48164 * 120.87507 * 180.25078 * 5 4 3 7 7 O 1.21513 * 120.00058 * 322.14273 * 6 5 4 8 8 N 1.34780 * 119.99929 * 142.14319 * 6 5 4 9 9 C 1.46500 * 119.99824 * 4.78233 * 8 6 5 10 10 C 1.46494 * 119.99957 * 184.78490 * 8 6 5 11 11 C 1.50698 * 109.47526 * 89.99712 * 10 8 6 12 12 H 1.08000 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.37876 * 120.00410 * 179.97438 * 11 10 8 14 14 N 1.31511 * 120.00111 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00000 * 0.02562 * 13 11 10 16 16 H 1.48501 * 109.47173 * 89.99321 * 15 13 11 17 17 H 1.48494 * 109.46987 * 209.99520 * 15 13 11 18 18 H 1.48507 * 109.47033 * 329.99617 * 15 13 11 19 19 C 1.39962 * 118.24974 * 0.27298 * 5 4 3 20 20 C 1.38130 * 119.16126 * 0.02562 * 19 5 4 21 21 Cl 1.73597 * 119.51569 * 179.97438 * 20 19 5 22 22 N 1.32007 * 120.96720 * 359.97438 * 20 19 5 23 23 H 1.09003 * 109.47573 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47717 * 300.00702 * 1 2 3 25 25 H 1.09007 * 109.46694 * 60.00597 * 1 2 3 26 26 H 0.97005 * 119.99714 * 179.97438 * 2 1 3 27 27 H 1.08004 * 120.51792 * 359.97438 * 4 3 2 28 28 H 1.09003 * 109.47075 * 84.81432 * 9 8 6 29 29 H 1.08997 * 109.46885 * 204.81350 * 9 8 6 30 30 H 1.09002 * 109.47197 * 324.80995 * 9 8 6 31 31 H 1.09002 * 109.47188 * 209.99724 * 10 8 6 32 32 H 1.09004 * 109.47254 * 329.99993 * 10 8 6 33 33 H 0.96998 * 120.00266 * 180.02562 * 14 13 11 34 34 H 1.07997 * 120.41627 * 180.02562 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2039 0.0000 4 6 1.4571 2.4040 -0.0005 5 6 2.1689 3.6041 0.0053 6 6 1.4630 4.9068 0.0105 7 8 0.4435 5.0480 -0.6354 8 7 1.9517 5.9351 0.7318 9 6 3.2346 5.7987 1.4259 10 6 1.2000 7.1893 0.8217 11 6 0.2674 7.1324 2.0041 12 1 0.2379 6.2503 2.6266 13 6 -0.5475 8.2067 2.2918 14 7 -1.3617 8.1568 3.3233 15 14 -0.4960 9.7326 1.2155 16 1 -1.4837 9.5957 0.1150 17 1 -0.8286 10.9266 2.0333 18 1 0.8651 9.8885 0.6425 19 6 3.5673 3.5449 0.0056 20 6 4.1887 2.3113 -0.0004 21 17 5.9227 2.2272 -0.0007 22 7 3.4835 1.1955 -0.0058 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.9499 -0.8401 0.0004 27 1 0.3771 2.4070 -0.0014 28 1 4.0470 6.0288 0.7365 29 1 3.2669 6.4890 2.2688 30 1 3.3445 4.7767 1.7888 31 1 1.8939 8.0207 0.9460 32 1 0.6213 7.3323 -0.0909 33 1 -1.9353 8.9125 3.5255 34 1 4.1529 4.4523 0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050722483.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = 17.429776 kcal Electronic energy + Delta-G solvation = -19716.878644 eV Core-core repulsion = 16483.584310 eV Total energy + Delta-G solvation = -3233.294333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 283.083 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.68051 -38.84564 -36.93767 -35.71512 -35.12680 -33.02033 -32.26019 -30.06562 -28.57988 -26.57967 -26.25829 -24.51192 -22.52394 -22.14481 -19.50922 -17.70085 -17.37668 -16.99735 -16.17250 -15.64948 -15.39563 -15.23519 -14.90188 -14.69272 -14.28877 -13.98260 -13.67834 -13.03018 -12.85771 -12.42954 -12.39445 -12.23507 -11.89628 -11.74454 -11.45987 -11.38157 -11.02718 -10.58556 -10.33529 -10.14243 -10.01407 -9.67135 -9.58033 -9.22113 -8.64109 -7.92317 -7.83144 -6.13909 -4.13916 0.83844 1.08141 1.64932 2.95490 3.19316 3.26297 3.32199 3.34169 3.54561 3.84694 4.35153 4.54249 4.80253 4.86008 5.01676 5.06845 5.18831 5.23037 5.27260 5.53286 5.54977 5.58282 5.73803 6.08123 6.11749 6.14795 6.61006 6.69896 6.85421 7.17405 7.26071 7.52985 7.81776 8.03405 8.38665 8.70573 8.89079 9.45361 10.99221 Molecular weight = 283.08amu Principal moments of inertia in cm(-1) A = 0.019668 B = 0.004737 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.265078 B = 5908.878336 C = 6895.732237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.726 5.726 3 C 0.417 3.583 4 C -0.181 4.181 5 C -0.016 4.016 6 C 0.551 3.449 7 O -0.526 6.526 8 N -0.583 5.583 9 C 0.074 3.926 10 C 0.214 3.786 11 C -0.534 4.534 12 H 0.075 0.925 13 C 0.074 3.926 14 N -0.895 5.895 15 Si 0.876 3.124 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.194 4.194 20 C 0.220 3.780 21 Cl -0.034 7.034 22 N -0.536 5.536 23 H 0.081 0.919 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.407 0.593 27 H 0.149 0.851 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.035 0.965 32 H 0.041 0.959 33 H 0.265 0.735 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.587 -13.666 -6.111 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.359 5.359 3 C 0.181 3.819 4 C -0.207 4.207 5 C -0.027 4.027 6 C 0.337 3.663 7 O -0.403 6.403 8 N -0.314 5.314 9 C -0.070 4.070 10 C 0.094 3.906 11 C -0.572 4.572 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.218 4.218 20 C 0.056 3.944 21 Cl -0.005 7.005 22 N -0.257 5.257 23 H 0.099 0.901 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.242 0.758 27 H 0.166 0.834 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 10.253 -14.200 -6.341 18.628 hybrid contribution -0.099 1.144 -0.288 1.184 sum 10.154 -13.056 -6.629 17.819 Atomic orbital electron populations 1.21702 0.78242 1.03082 1.02264 1.44210 1.06004 1.04781 1.80937 1.17864 0.86388 0.86682 0.91002 1.21551 1.01949 0.89986 1.07180 1.20272 0.92815 0.94731 0.94912 1.17969 0.84449 0.83048 0.80863 1.90766 1.24012 1.82594 1.42945 1.47753 1.21213 1.14908 1.47518 1.22075 0.84651 1.02807 0.97424 1.19783 0.92018 0.80109 0.98704 1.21302 1.21208 1.03514 1.11177 0.90672 1.24843 0.94629 0.98404 0.94980 1.69889 1.24257 1.31659 1.27549 0.86849 0.79237 0.82753 0.80872 1.19813 1.20989 1.18965 1.22048 0.94119 0.98088 1.07586 1.20954 0.86665 0.88811 0.98015 1.98398 1.07048 1.98625 1.96474 1.66075 1.06565 1.31545 1.21491 0.90071 0.92005 0.92075 0.75786 0.83370 0.92945 0.90062 0.91467 0.94693 0.94126 0.92457 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 9.92 59.85 0.59 1.33 16 2 N -0.73 -7.43 5.89 -67.23 -0.40 -7.82 16 3 C 0.42 5.67 7.65 -155.08 -1.19 4.48 16 4 C -0.18 -2.76 8.96 -38.79 -0.35 -3.11 16 5 C -0.02 -0.26 5.29 -104.69 -0.55 -0.82 16 6 C 0.55 11.35 7.41 -12.18 -0.09 11.26 16 7 O -0.53 -12.75 16.48 5.35 0.09 -12.66 16 8 N -0.58 -11.88 2.86 -183.96 -0.53 -12.41 16 9 C 0.07 1.13 8.87 59.85 0.53 1.66 16 10 C 0.21 5.11 4.24 -5.20 -0.02 5.09 16 11 C -0.53 -15.01 9.94 -34.44 -0.34 -15.35 16 12 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 15 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 19 C -0.19 -2.73 7.43 -38.98 -0.29 -3.02 16 20 C 0.22 3.00 7.26 -17.52 -0.13 2.88 16 21 Cl -0.03 -0.39 29.10 -51.86 -1.51 -1.90 16 22 N -0.54 -7.60 10.34 -9.60 -0.10 -7.70 16 23 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.53 7.93 -51.93 -0.41 0.12 16 25 H 0.06 0.51 7.92 -51.92 -0.41 0.10 16 26 H 0.41 3.49 8.95 -40.82 -0.37 3.12 16 27 H 0.15 2.23 6.70 -52.48 -0.35 1.87 16 28 H 0.05 0.64 6.88 -51.93 -0.36 0.28 16 29 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 30 H 0.07 0.95 5.83 -51.93 -0.30 0.64 16 31 H 0.04 0.78 7.13 -51.93 -0.37 0.41 16 32 H 0.04 1.03 6.79 -51.93 -0.35 0.68 16 33 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 34 H 0.16 1.90 5.27 -52.49 -0.28 1.63 16 LS Contribution 305.23 15.07 4.60 4.60 Total: -1.00 -33.48 305.23 -7.30 -40.78 By element: Atomic # 1 Polarization: 4.27 SS G_CDS: -3.63 Total: 0.64 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -1.93 Total: 6.42 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.25 Total: -54.28 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.48 -7.30 -40.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050722483.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.206 kcal (2) G-P(sol) polarization free energy of solvation -33.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds