Wall clock time and date at job start Tue Mar 31 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30898 * 1 3 3 Si 1.86803 * 120.00054 * 2 1 4 4 H 1.48498 * 109.46824 * 239.99803 * 3 2 1 5 5 H 1.48506 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47084 * 119.99534 * 3 2 1 7 7 C 1.39864 * 120.00125 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00227 * 160.81235 * 7 2 1 9 9 C 1.41109 * 119.99832 * 340.81687 * 7 2 1 10 10 C 1.40906 * 120.15652 * 335.02100 * 9 7 2 11 11 C 1.36311 * 119.83967 * 179.73992 * 10 9 7 12 12 C 1.39591 * 120.15895 * 0.54426 * 11 10 9 13 13 N 1.38862 * 119.84722 * 179.75941 * 12 11 10 14 14 C 1.39000 * 119.99294 * 324.06225 * 13 12 11 15 15 C 1.39275 * 119.93183 * 331.06442 * 14 13 12 16 16 C 1.37108 * 120.06644 * 179.72434 * 15 14 13 17 17 C 1.39857 * 119.93294 * 0.54756 * 16 15 14 18 18 C 1.47396 * 120.07396 * 179.70177 * 17 16 15 19 19 O 1.21516 * 120.00401 * 180.02562 * 18 17 16 20 20 O 1.34759 * 120.00016 * 0.02562 * 18 17 16 21 21 C 1.39864 * 119.86088 * 359.72434 * 17 16 15 22 22 C 1.37114 * 119.92478 * 0.02562 * 21 17 16 23 23 C 1.39591 * 120.31454 * 359.72841 * 12 11 10 24 24 C 1.36322 * 120.15779 * 359.97438 * 23 12 11 25 25 H 0.97009 * 120.00350 * 0.02562 * 1 2 3 26 26 H 1.07999 * 120.07449 * 0.02562 * 10 9 7 27 27 H 1.08004 * 119.92146 * 180.24814 * 11 10 9 28 28 H 0.96992 * 120.00530 * 144.06294 * 13 12 11 29 29 H 1.07997 * 119.96575 * 359.97438 * 15 14 13 30 30 H 1.08002 * 120.03543 * 180.24628 * 16 15 14 31 31 H 0.96704 * 117.00557 * 179.97438 * 20 18 17 32 32 H 1.07994 * 120.03800 * 179.97438 * 21 17 16 33 33 H 1.08005 * 119.96092 * 179.97438 * 22 21 17 34 34 H 1.08003 * 119.92212 * 180.02562 * 23 12 11 35 35 H 1.07999 * 120.07981 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 3.0968 1.6963 -1.2125 5 1 1.2779 2.7465 -0.0006 6 1 3.0967 1.6965 1.2126 7 6 2.0083 -1.2112 0.0005 8 1 3.0432 -1.2374 -0.3068 9 6 1.3615 -2.3992 0.4026 10 6 0.2536 -2.3427 1.2714 11 6 -0.3696 -3.4939 1.6515 12 6 0.0942 -4.7274 1.1912 13 7 -0.5425 -5.8964 1.5865 14 6 -1.0599 -6.0053 2.8719 15 6 -0.4765 -5.2952 3.9184 16 6 -0.9881 -5.3962 5.1864 17 6 -2.0900 -6.2222 5.4306 18 6 -2.6385 -6.3381 6.7938 19 8 -3.5956 -7.0565 7.0046 20 8 -2.0785 -5.6474 7.8064 21 6 -2.6702 -6.9384 4.3786 22 6 -2.1570 -6.8291 3.1119 23 6 1.1948 -4.7913 0.3349 24 6 1.8241 -3.6477 -0.0582 25 1 -0.4851 0.8401 -0.0004 26 1 -0.1037 -1.3893 1.6316 27 1 -1.2214 -3.4519 2.3141 28 1 -0.6261 -6.6369 0.9656 29 1 0.3774 -4.6613 3.7301 30 1 -0.5377 -4.8422 5.9968 31 1 -2.4732 -5.7553 8.6826 32 1 -3.5208 -7.5773 4.5641 33 1 -2.6043 -7.3822 2.2992 34 1 1.5481 -5.7491 -0.0177 35 1 2.6757 -3.6987 -0.7204 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051601839.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:27 Heat of formation + Delta-G solvation = -47.042394 kcal Electronic energy + Delta-G solvation = -20431.588538 eV Core-core repulsion = 17165.638581 eV Total energy + Delta-G solvation = -3265.949958 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 283.100 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27208 -39.24077 -37.63843 -35.98868 -35.19055 -33.31538 -30.98863 -30.15869 -29.65967 -28.44419 -25.18691 -23.60126 -22.65816 -21.18438 -21.10941 -20.16678 -18.03853 -17.50331 -17.42595 -16.70223 -16.42452 -15.48397 -15.30485 -14.57275 -14.24672 -14.07564 -13.60390 -13.47996 -13.20957 -12.95567 -12.58217 -12.26602 -12.17824 -11.94480 -11.58216 -11.44203 -11.23656 -11.17822 -10.96955 -10.74132 -10.49424 -9.99737 -9.96894 -9.54694 -9.23483 -8.88432 -8.09135 -7.73229 -6.96565 -6.70778 -4.39463 0.96556 1.64459 2.54052 2.81550 2.90681 3.00458 3.02211 3.13416 3.18863 3.83446 3.89974 4.05274 4.48064 5.00485 5.13754 5.29869 5.51748 5.53142 5.69861 5.81444 6.02921 6.11887 6.20076 6.40497 6.53821 6.54564 6.59076 6.72708 6.78559 6.91307 7.02704 7.08524 7.32013 7.42329 7.61165 7.88152 7.99463 8.00801 8.16090 8.25741 8.47728 8.73991 8.82731 10.04069 Molecular weight = 283.10amu Principal moments of inertia in cm(-1) A = 0.023154 B = 0.003622 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.001221 B = 7728.657521 C = 8528.518564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.105 3.895 10 C -0.149 4.149 11 C -0.109 4.109 12 C 0.001 3.999 13 N -0.659 5.659 14 C 0.254 3.746 15 C -0.189 4.189 16 C -0.019 4.019 17 C -0.207 4.207 18 C 0.533 3.467 19 O -0.535 6.535 20 O -0.516 6.516 21 C -0.010 4.010 22 C -0.212 4.212 23 C -0.105 4.105 24 C -0.211 4.211 25 H 0.283 0.717 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.398 0.602 29 H 0.136 0.864 30 H 0.132 0.868 31 H 0.408 0.592 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -7.227 7.225 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.102 3.898 10 C -0.169 4.169 11 C -0.130 4.130 12 C -0.092 4.092 13 N -0.276 5.276 14 C 0.147 3.853 15 C -0.211 4.211 16 C -0.038 4.038 17 C -0.211 4.211 18 C 0.381 3.619 19 O -0.427 6.427 20 O -0.327 6.327 21 C -0.029 4.029 22 C -0.234 4.234 23 C -0.125 4.125 24 C -0.232 4.232 25 H 0.094 0.906 26 H 0.137 0.863 27 H 0.111 0.889 28 H 0.233 0.767 29 H 0.154 0.846 30 H 0.150 0.850 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.202 -7.039 6.806 10.035 hybrid contribution -0.036 0.441 0.200 0.485 sum -2.238 -6.598 7.006 9.881 Atomic orbital electron populations 1.69843 1.07647 1.29694 1.33935 1.25936 0.94725 1.01478 0.92160 0.86356 0.80209 0.80065 0.80110 1.18932 1.20244 1.18672 1.19535 0.98727 0.91499 1.38810 0.90246 1.17638 0.91254 0.92084 0.88847 1.20912 0.99315 0.96622 1.00013 1.20348 0.99236 0.91687 1.01697 1.17111 0.98975 0.84447 1.08710 1.41696 1.59517 1.16331 1.10038 1.18187 0.89846 0.92061 0.85250 1.20881 1.03001 1.05948 0.91305 1.21042 0.92562 0.93502 0.96722 1.18650 1.03572 1.08992 0.89869 1.20930 0.79897 0.75557 0.85542 1.90843 1.27790 1.39147 1.84890 1.84605 1.60469 1.66677 1.20976 1.20726 0.96887 0.94448 0.90811 1.20526 0.98316 1.07083 0.97518 1.20089 0.94730 0.97240 1.00440 1.20563 1.03906 0.92494 1.06190 0.90561 0.86300 0.88926 0.76731 0.84581 0.85017 0.73471 0.85194 0.85571 0.89110 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 11.06 55.54 0.61 -18.77 16 2 C 0.08 1.81 5.10 -17.34 -0.09 1.72 16 3 Si 0.91 17.74 29.60 -169.99 -5.03 12.70 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.42 9.02 -37.89 -0.34 -11.76 16 8 H 0.08 1.90 7.91 -52.49 -0.42 1.49 16 9 C 0.10 2.60 5.57 -106.79 -0.59 2.01 16 10 C -0.15 -3.62 8.64 -39.27 -0.34 -3.95 16 11 C -0.11 -2.39 7.95 -39.77 -0.32 -2.70 16 12 C 0.00 0.02 5.73 -83.67 -0.48 -0.46 16 13 N -0.66 -10.78 5.37 -8.30 -0.04 -10.82 16 14 C 0.25 3.99 5.90 -83.84 -0.49 3.49 16 15 C -0.19 -3.02 8.10 -39.61 -0.32 -3.34 16 16 C -0.02 -0.27 9.58 -39.39 -0.38 -0.65 16 17 C -0.21 -3.00 5.88 -104.96 -0.62 -3.61 16 18 C 0.53 7.44 8.26 34.46 0.28 7.73 16 19 O -0.54 -8.63 17.12 -19.28 -0.33 -8.96 16 20 O -0.52 -5.59 12.67 -40.65 -0.51 -6.11 16 21 C -0.01 -0.13 9.56 -39.38 -0.38 -0.51 16 22 C -0.21 -2.92 9.91 -39.60 -0.39 -3.31 16 23 C -0.10 -2.13 9.90 -39.77 -0.39 -2.53 16 24 C -0.21 -4.79 9.74 -39.27 -0.38 -5.18 16 25 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 26 H 0.12 3.01 6.24 -52.49 -0.33 2.68 16 27 H 0.09 1.94 7.01 -52.48 -0.37 1.58 16 28 H 0.40 5.51 8.90 -40.82 -0.36 5.14 16 29 H 0.14 2.36 6.73 -52.49 -0.35 2.00 16 30 H 0.13 1.68 7.60 -52.49 -0.40 1.29 16 31 H 0.41 2.45 9.11 45.56 0.42 2.86 16 32 H 0.13 1.65 7.64 -52.49 -0.40 1.25 16 33 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 34 H 0.09 1.61 8.06 -52.48 -0.42 1.18 16 35 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 309.59 15.07 4.67 4.67 Total: -1.00 -27.98 309.59 -8.49 -36.46 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -2.61 Total: 13.89 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -5.23 Total: -23.06 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.57 Total: -29.59 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.85 Total: -15.07 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.70 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.98 -8.49 -36.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051601839.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.579 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds